Wall clock time and date at job start Tue Mar 31 2020 10:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99784 * 2 1 4 4 H 1.48491 * 109.47403 * 240.00193 * 3 2 1 5 5 H 1.48510 * 109.47165 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47121 * 119.99911 * 3 2 1 7 7 C 1.37870 * 120.00248 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00116 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47246 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47026 * 179.97438 * 10 9 7 12 12 C 1.34772 * 119.99561 * 179.97438 * 11 10 9 13 13 O 1.21588 * 120.00376 * 0.02562 * 12 11 10 14 14 N 1.34784 * 119.99881 * 179.97438 * 12 11 10 15 15 C 1.46494 * 120.00066 * 180.02562 * 14 12 11 16 16 C 1.53007 * 109.47009 * 180.02562 * 15 14 12 17 17 C 1.53002 * 109.46889 * 180.02562 * 16 15 14 18 18 S 1.81004 * 109.46708 * 179.97438 * 17 16 15 19 19 C 1.76207 * 99.99725 * 180.02562 * 18 17 16 20 20 N 1.29753 * 124.95007 * 359.95944 * 19 18 17 21 21 C 1.32096 * 116.85141 * 180.02562 * 20 19 18 22 22 C 1.33335 * 114.58980 * 359.97438 * 21 20 19 23 23 S 1.70961 * 124.94985 * 180.02562 * 19 18 17 24 24 H 0.97002 * 120.00172 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47327 * 59.99609 * 9 7 2 26 26 H 1.08994 * 109.47027 * 299.99623 * 9 7 2 27 27 H 1.09000 * 109.47104 * 59.99684 * 10 9 7 28 28 H 1.09002 * 109.46820 * 299.99594 * 10 9 7 29 29 H 0.96999 * 120.00065 * 0.02562 * 11 10 9 30 30 H 0.96999 * 119.99750 * 0.02562 * 14 12 11 31 31 H 1.08998 * 109.47439 * 60.00439 * 15 14 12 32 32 H 1.08998 * 109.47458 * 300.00382 * 15 14 12 33 33 H 1.08998 * 109.46694 * 59.99942 * 16 15 14 34 34 H 1.08993 * 109.47169 * 300.00001 * 16 15 14 35 35 H 1.08999 * 109.47096 * 60.00086 * 17 16 15 36 36 H 1.08993 * 109.47215 * 299.99972 * 17 16 15 37 37 H 1.08000 * 122.70610 * 180.02562 * 21 20 19 38 38 H 1.07997 * 125.95156 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 7 1.5130 -4.9308 0.0012 12 6 2.1870 -6.0979 0.0007 13 8 3.4028 -6.0978 0.0003 14 7 1.5131 -7.2652 0.0018 15 6 2.2457 -8.5338 0.0019 16 6 1.2515 -9.6968 0.0026 17 6 2.0166 -11.0218 0.0034 18 16 0.8404 -12.3976 0.0050 19 6 1.9606 -13.7577 0.0064 20 7 3.2541 -13.6554 0.0055 21 6 3.9419 -14.7832 0.0063 22 6 3.1956 -15.8881 0.0085 23 16 1.5016 -15.4046 0.0076 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8896 26 1 0.6242 -2.5567 0.8903 27 1 2.8721 -3.6042 0.8905 28 1 2.8720 -3.6043 -0.8895 29 1 0.5430 -4.9308 0.0011 30 1 0.5432 -7.2652 0.0025 31 1 2.8730 -8.5911 0.8915 32 1 2.8718 -8.5920 -0.8884 33 1 0.6246 -9.6393 -0.8872 34 1 0.6252 -9.6389 0.8927 35 1 2.6433 -11.0790 0.8934 36 1 2.6432 -11.0800 -0.8865 37 1 5.0216 -14.8082 0.0060 38 1 3.5653 -16.9029 0.0091 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753225091.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:58 Heat of formation + Delta-G solvation = -27.736584 kcal Electronic energy + Delta-G solvation = -19615.439632 eV Core-core repulsion = 16323.452027 eV Total energy + Delta-G solvation = -3291.987606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.97898 -40.43604 -37.25227 -36.33611 -34.83011 -33.72600 -31.51839 -31.28639 -27.70165 -26.61026 -26.16723 -23.12164 -22.74440 -21.97237 -21.70085 -19.85316 -19.27525 -18.40010 -17.60270 -17.19403 -17.10253 -16.48311 -16.34001 -16.33582 -15.65613 -15.48309 -15.20725 -15.01969 -14.83699 -14.43421 -14.25083 -13.91257 -13.21286 -13.13610 -12.91427 -12.79271 -12.52135 -12.51074 -12.25028 -12.08276 -11.68073 -11.66077 -11.49901 -11.21499 -10.94956 -10.82367 -10.58675 -10.34749 -10.32308 -9.70931 -8.64159 -8.22393 -6.32646 -0.42365 -0.11371 0.51880 0.77338 1.03162 1.43156 1.45537 1.53318 1.73347 1.80214 2.17295 2.42842 3.12391 3.36174 3.66116 3.83354 3.91328 3.92873 4.36555 4.36870 4.49367 4.51557 4.53877 4.54351 4.72305 4.88249 4.99662 5.06271 5.08539 5.32699 5.48845 5.53337 5.61361 5.80451 6.06607 6.18931 6.51493 6.80177 7.14970 7.36582 7.60920 8.89166 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.058771 B = 0.001532 C = 0.001496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.308270 B =18271.550740 C =18711.507279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.023 3.977 10 C 0.160 3.840 11 N -0.733 5.733 12 C 0.696 3.304 13 O -0.642 6.642 14 N -0.732 5.732 15 C 0.147 3.853 16 C -0.105 4.105 17 C -0.093 4.093 18 S -0.003 6.003 19 C -0.015 4.015 20 N -0.502 5.502 21 C 0.028 3.972 22 C -0.251 4.251 23 S 0.192 5.808 24 H 0.266 0.734 25 H 0.010 0.990 26 H 0.010 0.990 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.408 0.592 30 H 0.413 0.587 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.197 0.803 38 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.707 -35.466 0.014 35.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.077 0.923 9 C -0.014 4.014 10 C 0.035 3.965 11 N -0.388 5.388 12 C 0.396 3.604 13 O -0.524 6.524 14 N -0.390 5.390 15 C 0.021 3.979 16 C -0.144 4.144 17 C -0.243 4.243 18 S 0.230 5.770 19 C -0.399 4.399 20 N -0.223 5.223 21 C -0.125 4.125 22 C -0.394 4.394 23 S 0.442 5.558 24 H 0.074 0.926 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.243 0.757 30 H 0.250 0.750 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.213 0.787 38 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -1.710 -35.293 0.013 35.335 hybrid contribution 1.961 0.955 -0.001 2.181 sum 0.250 -34.338 0.012 34.339 Atomic orbital electron populations 1.70050 1.07486 1.28022 1.50937 1.25851 0.95799 1.03014 0.94395 0.85506 0.78307 0.78181 0.79090 1.19395 1.20549 1.19404 1.21447 0.93617 0.91965 1.51665 0.92331 1.19133 0.94243 0.91600 0.96442 1.21072 0.94645 0.81178 0.99558 1.45205 1.10434 1.04397 1.78735 1.16180 0.85123 0.81350 0.77744 1.90866 1.13901 1.87387 1.60269 1.44886 1.10434 1.03591 1.80041 1.21084 0.94277 0.80639 1.01919 1.21446 0.97710 0.89698 1.05554 1.23354 0.99735 0.94015 1.07243 1.85617 1.06907 0.93343 1.91104 1.28591 0.98200 1.04162 1.08971 1.67006 1.03855 1.32765 1.18653 1.22181 1.02830 0.85666 1.01832 1.27468 0.94491 1.05809 1.11611 1.83859 1.08003 0.96768 1.67183 0.92563 0.97204 0.97191 0.93900 0.93896 0.75657 0.75005 0.92364 0.92368 0.88681 0.88689 0.88814 0.88810 0.78653 0.77234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -30.86 9.11 25.60 0.23 -30.63 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.18 5.09 29.85 0.15 1.34 16 10 C 0.16 7.03 5.61 86.38 0.48 7.52 16 11 N -0.73 -25.81 5.56 -478.53 -2.66 -28.47 16 12 C 0.70 24.19 8.57 179.05 1.53 25.73 16 13 O -0.64 -28.26 16.34 -3.99 -0.07 -28.33 16 14 N -0.73 -17.01 5.56 -478.53 -2.66 -19.67 16 15 C 0.15 2.95 5.67 86.38 0.49 3.44 16 16 C -0.10 -1.32 5.33 30.60 0.16 -1.16 16 17 C -0.09 -1.35 5.14 71.98 0.37 -0.98 16 18 S 0.00 -0.04 22.29 -56.49 -1.26 -1.30 16 19 C -0.01 -0.25 7.46 130.55 0.97 0.72 16 20 N -0.50 -9.40 9.84 -200.68 -1.97 -11.37 16 21 C 0.03 0.37 11.34 83.54 0.95 1.32 16 22 C -0.25 -2.39 11.34 66.71 0.76 -1.63 16 23 S 0.19 2.26 23.20 -56.49 -1.31 0.95 16 24 H 0.27 14.65 8.31 -92.71 -0.77 13.88 16 25 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.41 11.95 8.49 -92.71 -0.79 11.16 16 30 H 0.41 6.70 8.49 -92.71 -0.79 5.91 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.09 1.50 8.14 -2.40 -0.02 1.48 16 36 H 0.09 1.50 8.14 -2.40 -0.02 1.48 16 37 H 0.20 1.69 8.06 -2.91 -0.02 1.66 16 38 H 0.21 0.54 8.06 -2.91 -0.02 0.52 16 Total: -1.00 -73.35 357.61 -1.54 -74.89 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -0.49 Total: 14.87 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 6.57 Total: 6.59 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -7.01 Total: -113.44 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.07 Total: -28.33 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.57 Total: -0.35 kcal Total: -73.35 -1.54 -74.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753225091.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.153 kcal (2) G-P(sol) polarization free energy of solvation -73.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds