Wall clock time and date at job start Tue Mar 31 2020 11:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46498 * 109.46951 * 2 1 4 4 C 1.46501 * 120.00528 * 274.12997 * 3 2 1 5 5 C 1.52998 * 109.47089 * 270.00395 * 4 3 2 6 6 F 1.39905 * 109.47222 * 299.99770 * 5 4 3 7 7 F 1.39901 * 109.47484 * 59.99465 * 5 4 3 8 8 C 1.34778 * 119.99904 * 94.13025 * 3 2 1 9 9 O 1.21606 * 120.00415 * 175.35788 * 8 3 2 10 10 C 1.47430 * 120.00089 * 355.36054 * 8 3 2 11 11 C 1.39676 * 120.21503 * 60.53788 * 10 8 3 12 12 C 1.37813 * 119.93949 * 180.02562 * 11 10 8 13 13 C 1.38655 * 120.38126 * 0.02562 * 12 11 10 14 14 C 1.37912 * 120.43630 * 0.02562 * 13 12 11 15 15 C 1.39111 * 120.05231 * 359.97438 * 14 13 12 16 16 S 1.76201 * 120.19049 * 180.02562 * 15 14 13 17 17 C 1.76202 * 99.99827 * 351.84386 * 16 15 14 18 18 H 1.07996 * 120.00115 * 4.89284 * 17 16 15 19 19 C 1.38810 * 119.99700 * 184.89305 * 17 16 15 20 20 N 1.31547 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99732 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47357 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46853 * 119.99962 * 21 19 17 24 24 H 1.48499 * 109.47394 * 239.99844 * 21 19 17 25 25 H 1.09005 * 109.47287 * 299.99323 * 1 2 3 26 26 H 1.09004 * 109.47822 * 59.99597 * 1 2 3 27 27 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46611 * 240.00207 * 2 1 3 29 29 H 1.08998 * 109.47141 * 120.00416 * 2 1 3 30 30 H 1.09007 * 109.46773 * 29.99512 * 4 3 2 31 31 H 1.08997 * 109.47315 * 150.00043 * 4 3 2 32 32 H 1.08997 * 109.47276 * 179.97438 * 5 4 3 33 33 H 1.08002 * 120.03178 * 0.28855 * 11 10 8 34 34 H 1.07996 * 119.80712 * 179.97438 * 12 11 10 35 35 H 1.07995 * 119.78309 * 180.02562 * 13 12 11 36 36 H 1.08001 * 119.97408 * 179.97438 * 14 13 12 37 37 H 0.97001 * 120.00205 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1763 2.1024 -1.2654 5 6 3.5877 1.8738 -1.8098 6 9 4.5262 2.3439 -0.8848 7 9 3.7892 0.5061 -2.0242 8 6 2.3221 1.9885 1.1642 9 8 2.8067 3.1039 1.1599 10 6 2.0671 1.3007 2.4430 11 6 2.6950 0.0853 2.7249 12 6 2.4521 -0.5531 3.9218 13 6 1.5861 0.0038 4.8505 14 6 0.9569 1.2026 4.5879 15 6 1.1890 1.8625 3.3855 16 16 0.3876 3.3947 3.0465 17 6 -0.7257 3.4659 4.4104 18 1 -0.6852 2.7100 5.1806 19 6 -1.6548 4.4938 4.4949 20 7 -1.7045 5.4143 3.5565 21 14 -2.8355 4.5689 5.9405 22 1 -2.5768 3.4246 6.8510 23 1 -2.6351 5.8425 6.6775 24 1 -4.2328 4.4998 5.4425 25 1 -0.3634 0.5137 0.8901 26 1 -0.3635 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 1.4452 1.7360 -1.9861 31 1 2.0194 3.1680 -1.0983 32 1 3.7052 2.4100 -2.7515 33 1 3.3735 -0.3518 2.0072 34 1 2.9384 -1.4930 4.1374 35 1 1.4030 -0.5045 5.7856 36 1 0.2835 1.6295 5.3164 37 1 -2.3535 6.1328 3.6157 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000756259039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:13:52 Heat of formation + Delta-G solvation = -108.248838 kcal Electronic energy + Delta-G solvation = -24495.164056 eV Core-core repulsion = 20613.552039 eV Total energy + Delta-G solvation = -3881.612017 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -48.83055 -46.83067 -39.85179 -37.62946 -35.75508 -32.81521 -31.75015 -30.52372 -30.39957 -28.61792 -25.91540 -24.08658 -23.43063 -22.05896 -21.96810 -19.47430 -18.00195 -17.61728 -17.35910 -16.75921 -16.36370 -16.17741 -15.68407 -15.17415 -14.78391 -14.48523 -13.87203 -13.69417 -13.62631 -13.52094 -13.21473 -13.06787 -12.97923 -12.57335 -12.43452 -12.23987 -12.13582 -11.72908 -11.62329 -11.28519 -11.25392 -11.20651 -11.03250 -10.87449 -10.36793 -9.83896 -9.60627 -9.47495 -8.78302 -8.61795 -8.53558 -8.27643 -6.61848 -6.53417 -4.24892 1.65662 1.95122 3.00722 3.06059 3.08035 3.16807 3.17755 3.33825 3.88355 3.98039 4.25800 4.30093 4.49215 4.77573 4.89138 4.99773 5.06023 5.12169 5.33609 5.37766 5.44155 5.54961 5.57796 5.61668 5.82910 5.90407 5.99567 6.09829 6.31764 6.42152 6.53008 6.64592 6.84558 6.95954 7.08511 7.39267 7.53289 7.58272 8.11024 8.55908 8.93933 10.52737 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016786 B = 0.004656 C = 0.004134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.617467 B = 6012.482084 C = 6770.750077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.098 3.902 3 N -0.611 5.611 4 C 0.069 3.931 5 C 0.244 3.756 6 F -0.194 7.194 7 F -0.209 7.209 8 C 0.575 3.425 9 O -0.508 6.508 10 C -0.152 4.152 11 C -0.072 4.072 12 C -0.174 4.174 13 C -0.083 4.083 14 C -0.148 4.148 15 C -0.048 4.048 16 S 0.088 5.912 17 C -0.564 4.564 18 H 0.095 0.905 19 C 0.080 3.920 20 N -0.861 5.861 21 Si 0.924 3.076 22 H -0.267 1.267 23 H -0.276 1.276 24 H -0.277 1.277 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.105 0.895 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.139 0.861 37 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.184 -11.253 -9.038 15.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.346 5.346 4 C -0.056 4.056 5 C 0.188 3.812 6 F -0.175 7.175 7 F -0.191 7.191 8 C 0.364 3.636 9 O -0.381 6.381 10 C -0.166 4.166 11 C -0.092 4.092 12 C -0.198 4.198 13 C -0.104 4.104 14 C -0.174 4.174 15 C -0.166 4.166 16 S 0.348 5.652 17 C -0.710 4.710 18 H 0.112 0.888 19 C -0.131 4.131 20 N -0.494 5.494 21 Si 0.749 3.251 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 H 0.086 0.914 26 H 0.073 0.927 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.132 0.868 32 H 0.130 0.870 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.157 0.843 37 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.334 -9.359 -10.012 14.707 hybrid contribution -0.830 -0.954 1.849 2.240 sum 4.504 -10.313 -8.164 13.903 Atomic orbital electron populations 1.22174 0.95617 1.02003 1.03076 1.21841 0.94880 0.81911 1.03822 1.47773 1.67213 1.14707 1.04882 1.22521 0.93946 1.01541 0.87595 1.22533 0.89337 0.76947 0.92337 1.93052 1.67438 1.87959 1.69042 1.92944 1.95986 1.34672 1.95482 1.18352 0.76583 0.85231 0.83413 1.90802 1.41488 1.18934 1.86925 1.19077 1.05165 0.97492 0.94857 1.20825 0.98191 0.93139 0.97043 1.20673 1.02838 1.01097 0.95150 1.21073 0.95739 0.95254 0.98317 1.21417 1.02471 0.96199 0.97280 1.22798 0.97725 1.01015 0.95047 1.83937 1.36471 1.12051 1.32719 1.23543 1.20867 1.15849 1.10791 0.88751 1.25111 0.96640 0.94191 0.97148 1.69976 1.34624 1.12376 1.32376 0.86017 0.79645 0.78674 0.80738 1.19094 1.20192 1.20215 0.91359 0.92716 0.91805 0.90552 0.88893 0.87732 0.86764 0.87047 0.86670 0.86836 0.86875 0.84322 0.91595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.13 10.24 37.16 0.38 -1.75 16 2 C 0.10 1.23 5.77 -4.04 -0.02 1.21 16 3 N -0.61 -9.39 2.39 -174.96 -0.42 -9.81 16 4 C 0.07 0.84 5.70 -4.04 -0.02 0.82 16 5 C 0.24 2.78 5.60 37.16 0.21 2.98 16 6 F -0.19 -3.07 16.07 2.25 0.04 -3.03 16 7 F -0.21 -2.51 16.18 2.25 0.04 -2.47 16 8 C 0.58 11.37 5.99 -12.52 -0.07 11.30 16 9 O -0.51 -11.74 15.23 5.27 0.08 -11.66 16 10 C -0.15 -3.03 4.96 -104.75 -0.52 -3.55 16 11 C -0.07 -1.19 7.59 -39.20 -0.30 -1.49 16 12 C -0.17 -2.67 10.02 -39.58 -0.40 -3.06 16 13 C -0.08 -1.39 10.03 -39.55 -0.40 -1.78 16 14 C -0.15 -3.04 9.25 -39.38 -0.36 -3.40 16 15 C -0.05 -1.07 6.14 -38.39 -0.24 -1.31 16 16 S 0.09 2.31 20.18 -107.50 -2.17 0.14 16 17 C -0.56 -15.18 9.08 30.94 0.28 -14.90 16 18 H 0.09 2.41 4.86 -52.49 -0.25 2.16 16 19 C 0.08 2.14 5.49 -17.46 -0.10 2.04 16 20 N -0.86 -24.30 13.22 55.49 0.73 -23.57 16 21 Si 0.92 20.30 29.55 -169.99 -5.02 15.28 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.28 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.80 7.18 -51.93 -0.37 0.43 16 29 H 0.09 1.21 4.33 -51.93 -0.22 0.98 16 30 H 0.10 0.92 8.07 -51.93 -0.42 0.50 16 31 H 0.11 1.55 7.49 -51.93 -0.39 1.16 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 1.64 7.37 -52.49 -0.39 1.25 16 34 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 35 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 36 H 0.14 2.95 4.99 -52.49 -0.26 2.69 16 37 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 331.28 15.07 4.99 4.99 Total: -1.00 -32.61 331.28 -7.27 -39.88 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -3.98 Total: 3.12 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -1.56 Total: -12.88 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 0.32 Total: -33.37 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 9 Polarization: -5.58 SS G_CDS: 0.07 Total: -5.50 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Atomic # 16 Polarization: 2.31 SS G_CDS: -2.17 Total: 0.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -32.61 -7.27 -39.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000756259039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.367 kcal (2) G-P(sol) polarization free energy of solvation -32.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds