Wall clock time and date at job start Tue Mar 31 2020 10:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47196 * 2 1 4 4 C 1.53002 * 109.47143 * 239.99919 * 2 1 3 5 5 C 1.53002 * 109.47047 * 120.00197 * 2 1 3 6 6 N 1.46500 * 109.46992 * 53.81871 * 5 2 1 7 7 C 1.46496 * 120.00007 * 83.21717 * 6 5 2 8 8 C 1.50696 * 109.47225 * 89.99731 * 7 6 5 9 9 H 1.08006 * 120.00074 * 0.02562 * 8 7 6 10 10 C 1.37884 * 120.00257 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99705 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00127 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47206 * 90.00222 * 12 10 8 14 14 H 1.48506 * 109.47179 * 210.00004 * 12 10 8 15 15 H 1.48496 * 109.47290 * 330.00169 * 12 10 8 16 16 C 1.34777 * 120.00058 * 263.21144 * 6 5 2 17 17 O 1.21696 * 120.00334 * 184.10416 * 16 6 5 18 18 C 1.46580 * 119.99718 * 4.10656 * 16 6 5 19 19 C 1.36676 * 125.44963 * 186.97738 * 18 16 6 20 20 C 1.37525 * 113.28711 * 180.02562 * 19 18 16 21 21 Cl 1.73595 * 122.46200 * 179.97438 * 20 19 18 22 22 C 1.33875 * 115.08029 * 0.02562 * 20 19 18 23 23 S 1.70620 * 110.95807 * 359.72430 * 22 20 19 24 24 H 1.09000 * 109.47030 * 318.55870 * 1 2 3 25 25 H 1.09003 * 109.47032 * 78.55370 * 1 2 3 26 26 H 1.08996 * 109.47533 * 198.55802 * 1 2 3 27 27 H 1.09005 * 109.47115 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47471 * 300.00112 * 3 2 1 29 29 H 1.08999 * 109.47153 * 60.00375 * 3 2 1 30 30 H 1.08990 * 109.47306 * 300.00274 * 4 2 1 31 31 H 1.09005 * 109.47051 * 60.00309 * 4 2 1 32 32 H 1.09005 * 109.46995 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.46955 * 293.81896 * 5 2 1 34 34 H 1.09001 * 109.47114 * 173.82222 * 5 2 1 35 35 H 1.08998 * 109.46969 * 209.99809 * 7 6 5 36 36 H 1.08997 * 109.47353 * 329.99937 * 7 6 5 37 37 H 0.97001 * 120.00484 * 180.02562 * 11 10 8 38 38 H 1.07997 * 123.35575 * 0.03983 * 19 18 16 39 39 H 1.08004 * 124.52258 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0399 -0.7213 1.2492 6 7 1.4339 -2.0529 1.3258 7 6 2.0148 -3.1665 0.5717 8 6 3.0468 -3.8636 1.4202 9 1 3.2494 -3.5126 2.4213 10 6 3.7316 -4.9503 0.9189 11 7 3.4845 -5.3781 -0.2999 12 14 5.0113 -5.8140 1.9704 13 1 4.3614 -6.8976 2.7507 14 1 6.0607 -6.3953 1.0951 15 1 5.6292 -4.8358 2.9013 16 6 0.3421 -2.2535 2.0902 17 8 -0.1171 -3.3737 2.2133 18 6 -0.2923 -1.1222 2.7731 19 6 -1.3138 -1.2133 3.6765 20 6 -1.7194 0.0072 4.1635 21 17 -3.0005 0.1684 5.3237 22 6 -1.0545 1.0620 3.6762 23 16 0.1430 0.5686 2.5654 24 1 -0.3633 0.7704 0.6802 25 1 -0.3633 0.2039 -1.0073 26 1 -0.3634 -0.9742 0.3270 27 1 3.1300 1.4425 0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6766 -1.7488 -1.2493 31 1 1.6767 -0.2074 -2.1393 32 1 3.1300 -0.7217 -1.2490 33 1 1.7697 -0.1476 2.1358 34 1 3.1243 -0.8181 1.1957 35 1 1.2288 -3.8721 0.3026 36 1 2.4864 -2.7852 -0.3339 37 1 3.9659 -6.1428 -0.6525 38 1 -1.7579 -2.1504 3.9782 39 1 -1.2468 2.0881 3.9531 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758337731.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:10 Heat of formation + Delta-G solvation = -15.593634 kcal Electronic energy + Delta-G solvation = -22886.740597 eV Core-core repulsion = 19560.943092 eV Total energy + Delta-G solvation = -3325.797505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.30630 -39.28705 -38.34741 -36.89661 -35.71968 -34.41432 -31.49336 -29.47767 -28.43623 -28.12255 -27.25013 -26.20540 -24.44589 -21.78321 -20.51840 -19.90287 -18.95909 -18.64080 -17.45005 -17.00146 -16.77137 -16.69114 -16.05605 -15.59827 -15.30832 -15.01162 -14.65964 -14.30031 -14.14761 -14.11244 -13.86232 -13.64649 -13.29226 -13.04930 -12.86995 -12.74771 -12.65590 -12.56116 -12.35234 -12.17044 -12.06227 -11.99556 -11.85901 -11.72697 -11.51913 -11.05397 -10.90048 -10.59789 -9.96658 -9.44701 -9.01811 -8.21763 -6.35131 -0.59152 0.33388 0.55454 1.15784 1.36284 1.39529 1.48331 1.54163 2.13885 2.24672 2.41693 3.08215 3.48379 3.70504 3.75782 3.98564 4.05091 4.23857 4.28078 4.50449 4.60754 4.67927 4.77915 4.85334 4.86978 4.94950 5.01102 5.04079 5.09111 5.15394 5.19347 5.22987 5.37834 5.43404 5.54507 5.58953 5.79850 6.07490 6.58423 6.72494 7.20236 7.37253 8.84938 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.014807 B = 0.004866 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.535934 B = 5752.937782 C = 7019.093375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.135 4.135 4 C -0.145 4.145 5 C 0.102 3.898 6 N -0.587 5.587 7 C 0.258 3.742 8 C -0.545 4.545 9 H 0.049 0.951 10 C 0.013 3.987 11 N -0.924 5.924 12 Si 0.961 3.039 13 H -0.284 1.284 14 H -0.273 1.273 15 H -0.262 1.262 16 C 0.571 3.429 17 O -0.588 6.588 18 C -0.298 4.298 19 C -0.065 4.065 20 C -0.076 4.076 21 Cl -0.057 7.057 22 C -0.272 4.272 23 S 0.385 5.615 24 H 0.092 0.908 25 H 0.077 0.923 26 H 0.028 0.972 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.072 0.928 30 H 0.035 0.965 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.086 0.914 34 H 0.095 0.905 35 H -0.007 1.007 36 H 0.057 0.943 37 H 0.267 0.733 38 H 0.139 0.861 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.374 21.351 3.402 22.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.085 4.085 3 C -0.193 4.193 4 C -0.202 4.202 5 C -0.023 4.023 6 N -0.316 5.316 7 C 0.138 3.862 8 C -0.583 4.583 9 H 0.067 0.933 10 C -0.186 4.186 11 N -0.564 5.564 12 Si 0.786 3.214 13 H -0.211 1.211 14 H -0.198 1.198 15 H -0.187 1.187 16 C 0.360 3.640 17 O -0.470 6.470 18 C -0.419 4.419 19 C -0.100 4.100 20 C -0.115 4.115 21 Cl -0.029 7.029 22 C -0.410 4.410 23 S 0.656 5.344 24 H 0.110 0.890 25 H 0.096 0.904 26 H 0.047 0.953 27 H 0.088 0.912 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.054 0.946 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.011 0.989 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.157 0.843 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.590 21.460 2.584 22.097 hybrid contribution -0.821 -2.290 1.454 2.834 sum -5.411 19.170 4.038 20.324 Atomic orbital electron populations 1.22736 0.95013 1.01220 1.03744 1.21032 0.95798 0.97403 0.94246 1.21894 1.02097 0.91748 1.03551 1.22044 1.01148 0.99833 0.97222 1.22348 1.00216 0.81771 0.98000 1.47999 1.26871 1.11451 1.45252 1.19095 0.91818 0.83621 0.91716 1.21713 1.21254 1.14738 1.00625 0.93250 1.25741 0.99306 0.97259 0.96300 1.70025 1.43128 1.26405 1.16846 0.85510 0.78545 0.78648 0.78687 1.21055 1.19789 1.18660 1.17425 0.80520 0.87112 0.78931 1.90765 1.65823 1.26069 1.64376 1.24511 1.07786 0.99554 1.10021 1.20416 0.95380 0.98843 0.95325 1.19338 0.98165 0.93138 1.00861 1.98343 1.49093 1.97942 1.57510 1.26622 1.04554 1.04864 1.04929 1.83665 1.27388 0.92676 1.30659 0.89021 0.90373 0.95272 0.91239 0.90128 0.90902 0.94594 0.90773 0.92444 0.89771 0.88627 0.98904 0.92505 0.92402 0.84303 0.77768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 7.10 71.98 0.51 -3.51 16 2 C -0.08 -1.98 0.59 -52.18 -0.03 -2.01 16 3 C -0.14 -1.98 8.30 71.98 0.60 -1.38 16 4 C -0.15 -4.05 7.36 71.98 0.53 -3.52 16 5 C 0.10 3.06 4.37 86.38 0.38 3.44 16 6 N -0.59 -24.92 1.92 -831.00 -1.60 -26.52 16 7 C 0.26 13.60 4.31 85.63 0.37 13.97 16 8 C -0.54 -31.25 9.39 25.60 0.24 -31.01 16 9 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 10 C 0.01 0.76 5.46 84.66 0.46 1.22 16 11 N -0.92 -55.14 13.29 21.45 0.28 -54.86 16 12 Si 0.96 44.90 29.54 68.60 2.03 46.93 16 13 H -0.28 -13.45 7.11 99.48 0.71 -12.75 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 16 C 0.57 25.45 6.14 86.42 0.53 25.98 16 17 O -0.59 -32.53 16.47 -4.33 -0.07 -32.60 16 18 C -0.30 -9.91 5.34 24.08 0.13 -9.78 16 19 C -0.07 -2.06 9.90 21.74 0.22 -1.85 16 20 C -0.08 -1.88 6.25 21.11 0.13 -1.74 16 21 Cl -0.06 -1.29 29.10 -2.72 -0.08 -1.37 16 22 C -0.27 -5.09 10.78 66.83 0.72 -4.37 16 23 S 0.39 7.81 11.95 -56.49 -0.67 7.14 16 24 H 0.09 1.70 4.59 -20.72 -0.10 1.60 16 25 H 0.08 1.64 8.00 -2.39 -0.02 1.62 16 26 H 0.03 0.92 5.00 -2.39 -0.01 0.91 16 27 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.79 6.78 -2.39 -0.02 0.77 16 30 H 0.04 1.30 5.33 -2.39 -0.01 1.29 16 31 H 0.07 1.68 8.13 -2.38 -0.02 1.66 16 32 H 0.06 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.09 2.14 3.65 -23.42 -0.09 2.05 16 34 H 0.10 2.96 8.12 -2.39 -0.02 2.94 16 35 H -0.01 -0.45 7.48 -2.39 -0.02 -0.46 16 36 H 0.06 2.92 5.16 -2.39 -0.01 2.91 16 37 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 38 H 0.14 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -73.71 327.78 5.59 -68.13 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: 0.91 Total: 7.73 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: 4.78 Total: -14.57 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -1.31 Total: -81.38 kcal Atomic # 8 Polarization: -32.53 SS G_CDS: -0.07 Total: -32.60 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 7.81 SS G_CDS: -0.67 Total: 7.14 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -73.71 5.59 -68.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758337731.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.534 kcal (2) G-P(sol) polarization free energy of solvation -73.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds