Wall clock time and date at job start Tue Mar 31 2020 10:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47028 * 119.99583 * 2 1 3 5 5 C 1.53003 * 109.47123 * 64.99875 * 4 2 1 6 6 N 1.46503 * 109.47007 * 179.97438 * 5 4 2 7 7 C 1.46497 * 120.00085 * 90.00341 * 6 5 4 8 8 C 1.50697 * 109.47558 * 94.85036 * 7 6 5 9 9 H 1.08007 * 119.99774 * 0.02562 * 8 7 6 10 10 C 1.37874 * 120.00226 * 179.97438 * 8 7 6 11 11 N 1.31519 * 120.00054 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00009 * 0.02562 * 10 8 7 13 13 H 1.48498 * 109.47489 * 89.99522 * 12 10 8 14 14 H 1.48502 * 109.47060 * 209.99594 * 12 10 8 15 15 H 1.48496 * 109.47212 * 329.99528 * 12 10 8 16 16 C 1.34773 * 120.00026 * 270.00173 * 6 5 4 17 17 O 1.21709 * 120.00162 * 5.69242 * 16 6 5 18 18 C 1.46575 * 119.99976 * 185.70078 * 16 6 5 19 19 C 1.36674 * 125.44896 * 186.79374 * 18 16 6 20 20 C 1.37530 * 113.28865 * 179.97438 * 19 18 16 21 21 Cl 1.73594 * 122.46551 * 179.97438 * 20 19 18 22 22 C 1.33876 * 115.07373 * 359.97438 * 20 19 18 23 23 S 1.70612 * 110.96275 * 359.72897 * 22 20 19 24 24 H 1.09001 * 109.46945 * 300.00657 * 1 2 3 25 25 H 1.09002 * 109.46901 * 60.00059 * 1 2 3 26 26 H 1.08998 * 109.47009 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47072 * 239.99787 * 2 1 3 28 28 H 1.09000 * 109.46860 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.46727 * 299.99589 * 3 2 1 30 30 H 1.08996 * 109.47327 * 59.99943 * 3 2 1 31 31 H 1.09004 * 109.47233 * 304.99934 * 4 2 1 32 32 H 1.08996 * 109.47245 * 185.00000 * 4 2 1 33 33 H 1.08995 * 109.47227 * 60.00465 * 5 4 2 34 34 H 1.09002 * 109.47169 * 299.99710 * 5 4 2 35 35 H 1.09001 * 109.47305 * 214.85626 * 7 6 5 36 36 H 1.09005 * 109.46987 * 334.84938 * 7 6 5 37 37 H 0.96995 * 120.00288 * 180.02562 * 11 10 8 38 38 H 1.08006 * 123.36324 * 0.02562 * 19 18 16 39 39 H 1.08000 * 124.51908 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6352 -2.1954 1.1881 6 7 2.1241 -2.8860 2.3841 7 6 1.2847 -2.9587 3.5825 8 6 0.5186 -4.2565 3.5814 9 1 0.6448 -4.9573 2.7693 10 6 -0.3425 -4.5496 4.6175 11 7 -1.0106 -5.6824 4.6168 12 14 -0.5601 -3.3379 6.0224 13 1 -1.6643 -2.3989 5.6996 14 1 -0.8874 -4.0775 7.2678 15 1 0.6984 -2.5739 6.2166 16 6 3.3460 -3.4545 2.3818 17 8 4.0844 -3.3063 1.4257 18 6 3.7857 -4.2515 3.5307 19 6 5.0399 -4.7658 3.7052 20 6 5.1789 -5.4746 4.8755 21 17 6.6725 -6.2305 5.3354 22 6 4.0777 -5.5388 5.6342 23 16 2.7868 -4.6910 4.9092 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9564 0.8899 31 1 1.6054 -0.2616 2.1370 32 1 3.1263 -0.6443 1.2952 33 1 2.0699 -2.6550 0.3005 34 1 0.5489 -2.2723 1.1423 35 1 1.9144 -2.9093 4.4708 36 1 0.5843 -2.1234 3.5868 37 1 -1.6167 -5.8886 5.3455 38 1 5.8423 -4.6285 2.9953 39 1 4.0162 -6.0542 6.5812 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760260064.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:39:16 Heat of formation + Delta-G solvation = -26.644106 kcal Electronic energy + Delta-G solvation = -22209.465873 eV Core-core repulsion = 18883.189184 eV Total energy + Delta-G solvation = -3326.276690 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.39856 -37.47718 -36.56825 -35.43524 -35.00406 -32.91681 -30.35472 -28.68003 -27.77226 -27.07838 -24.72976 -23.10311 -22.71187 -20.07369 -19.72611 -18.49665 -17.42710 -17.33835 -15.88001 -15.48280 -15.09873 -15.00568 -14.62022 -14.16776 -13.76591 -13.53939 -13.16630 -13.00261 -12.89592 -12.66575 -12.56024 -12.46787 -12.17878 -11.87510 -11.76650 -11.39534 -11.11253 -10.94522 -10.87698 -10.77288 -10.69054 -10.56226 -10.47354 -10.24434 -9.96894 -9.68403 -9.37933 -9.07758 -8.34132 -7.90245 -7.68210 -6.58385 -4.54072 1.11657 2.14377 2.36568 2.74302 2.96885 3.03645 3.07604 3.17865 3.70002 3.80502 3.95171 4.74510 4.96523 5.01406 5.05784 5.19799 5.47570 5.59179 5.64320 5.73345 5.79851 5.85519 5.89830 5.90493 5.99516 6.06165 6.14513 6.22358 6.26705 6.27593 6.34604 6.48578 6.56211 6.57013 6.66944 6.98109 7.14415 7.83440 8.08612 8.48784 8.74880 8.94957 10.51053 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010875 B = 0.005648 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.054746 B = 4956.135794 C = 6986.099596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.130 4.130 5 C 0.123 3.877 6 N -0.591 5.591 7 C 0.192 3.808 8 C -0.531 4.531 9 H 0.092 0.908 10 C 0.091 3.909 11 N -0.860 5.860 12 Si 0.846 3.154 13 H -0.264 1.264 14 H -0.273 1.273 15 H -0.252 1.252 16 C 0.594 3.406 17 O -0.556 6.556 18 C -0.282 4.282 19 C -0.074 4.074 20 C -0.070 4.070 21 Cl -0.088 7.088 22 C -0.329 4.329 23 S 0.413 5.587 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.037 0.963 36 H 0.047 0.953 37 H 0.275 0.725 38 H 0.146 0.854 39 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.800 7.490 -0.737 8.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 C -0.202 4.202 4 C -0.169 4.169 5 C 0.000 4.000 6 N -0.320 5.320 7 C 0.068 3.932 8 C -0.577 4.577 9 H 0.110 0.890 10 C -0.119 4.119 11 N -0.494 5.494 12 Si 0.670 3.330 13 H -0.189 1.189 14 H -0.198 1.198 15 H -0.176 1.176 16 C 0.383 3.617 17 O -0.437 6.437 18 C -0.404 4.404 19 C -0.108 4.108 20 C -0.109 4.109 21 Cl -0.060 7.060 22 C -0.468 4.468 23 S 0.693 5.307 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.164 0.836 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 2.737 7.601 -0.567 8.099 hybrid contribution 1.333 -0.139 0.621 1.477 sum 4.070 7.462 0.054 8.500 Atomic orbital electron populations 1.21919 0.95246 1.02245 1.01374 1.21047 0.95834 0.95927 0.98466 1.21822 1.00903 0.96153 1.01352 1.22026 1.01518 0.95660 0.97664 1.21440 0.99722 0.91087 0.87764 1.47712 1.15622 1.53550 1.15165 1.20098 0.90995 0.99165 0.82931 1.21497 1.23703 1.02763 1.09720 0.89030 1.24886 0.94225 0.95128 0.97632 1.69859 1.24981 1.22179 1.32397 0.87226 0.80736 0.82370 0.82650 1.18870 1.19818 1.17552 1.16884 0.81312 0.78278 0.85223 1.90727 1.54195 1.62971 1.35849 1.24496 0.99197 1.12431 1.04304 1.20106 0.96693 0.97627 0.96392 1.19345 0.88059 1.05722 0.97809 1.98296 1.34044 1.81400 1.92279 1.26913 1.01966 1.11811 1.06070 1.86157 1.01417 1.37417 1.05662 0.92711 0.93109 0.92021 0.91135 0.92828 0.92996 0.92856 0.91932 0.91607 0.90592 0.89874 0.94579 0.93488 0.91501 0.83645 0.82448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.95 37.16 0.33 -1.34 16 2 C -0.09 -1.11 2.92 -90.62 -0.26 -1.37 16 3 C -0.14 -1.51 9.19 37.16 0.34 -1.17 16 4 C -0.13 -1.87 5.01 -26.73 -0.13 -2.00 16 5 C 0.12 2.05 5.10 -4.04 -0.02 2.03 16 6 N -0.59 -11.59 2.47 -176.64 -0.44 -12.02 16 7 C 0.19 3.85 3.79 -5.20 -0.02 3.83 16 8 C -0.53 -12.23 7.13 -34.44 -0.25 -12.48 16 9 H 0.09 2.41 8.06 -52.48 -0.42 1.99 16 10 C 0.09 2.13 4.92 -17.82 -0.09 2.04 16 11 N -0.86 -21.93 13.96 55.43 0.77 -21.16 16 12 Si 0.85 17.11 26.91 -169.99 -4.57 12.53 16 13 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 14 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 15 H -0.25 -4.71 6.54 56.52 0.37 -4.34 16 16 C 0.59 12.55 7.58 -12.90 -0.10 12.45 16 17 O -0.56 -12.60 16.49 5.18 0.09 -12.52 16 18 C -0.28 -5.72 6.19 -36.79 -0.23 -5.94 16 19 C -0.07 -1.40 9.90 -40.40 -0.40 -1.80 16 20 C -0.07 -1.25 6.25 -41.37 -0.26 -1.51 16 21 Cl -0.09 -1.39 29.10 -51.86 -1.51 -2.90 16 22 C -0.33 -5.83 10.77 29.20 0.31 -5.52 16 23 S 0.41 8.02 14.98 -107.50 -1.61 6.41 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.72 6.56 -51.93 -0.34 0.37 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.08 1.32 7.50 -51.93 -0.39 0.93 16 34 H 0.08 1.33 6.50 -51.93 -0.34 1.00 16 35 H 0.04 0.73 4.02 -26.01 -0.10 0.63 16 36 H 0.05 0.89 7.46 -51.93 -0.39 0.51 16 37 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 38 H 0.15 2.65 8.06 -52.48 -0.42 2.22 16 39 H 0.16 2.46 8.06 -52.49 -0.42 2.04 16 LS Contribution 342.03 15.07 5.15 5.15 Total: -1.00 -25.43 342.03 -8.26 -33.69 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.38 Total: 3.59 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.77 Total: -12.76 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.34 Total: -33.18 kcal Atomic # 8 Polarization: -12.60 SS G_CDS: 0.09 Total: -12.52 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -4.57 Total: 12.53 kcal Atomic # 16 Polarization: 8.02 SS G_CDS: -1.61 Total: 6.41 kcal Atomic # 17 Polarization: -1.39 SS G_CDS: -1.51 Total: -2.90 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.43 -8.26 -33.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760260064.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.044 kcal (2) G-P(sol) polarization free energy of solvation -25.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds