Wall clock time and date at job start Tue Mar 31 2020 10:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.31907 * 122.59734 * 2 1 4 4 S 1.75356 * 111.38533 * 180.24844 * 3 2 1 5 5 C 1.75747 * 92.18260 * 359.64745 * 4 3 2 6 6 N 1.33929 * 131.27922 * 180.02562 * 5 4 3 7 7 C 1.31278 * 121.05087 * 180.37420 * 6 5 4 8 8 C 1.50703 * 118.90522 * 180.02562 * 7 6 5 9 9 N 1.32093 * 122.18986 * 359.96900 * 7 6 5 10 10 C 1.32494 * 121.18371 * 0.04152 * 9 7 6 11 11 N 1.38300 * 120.53772 * 179.97438 * 10 9 7 12 12 C 1.40529 * 119.99745 * 5.59339 * 11 10 9 13 13 C 1.40680 * 126.08276 * 0.03053 * 12 11 10 14 14 N 1.30908 * 108.38811 * 179.97438 * 13 12 11 15 15 N 1.40071 * 108.41301 * 359.97438 * 14 13 12 16 16 C 1.37307 * 126.06780 * 180.02562 * 15 14 13 17 17 H 1.08003 * 119.99840 * 179.97438 * 16 15 14 18 18 C 1.38976 * 120.00562 * 359.97438 * 16 15 14 19 19 N 1.31309 * 119.99434 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00322 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47112 * 59.99782 * 20 18 16 22 22 H 1.48502 * 109.47059 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46904 * 300.00049 * 20 18 16 24 24 C 1.35685 * 126.08334 * 179.71668 * 12 11 10 25 25 C 1.39729 * 109.61572 * 0.34828 * 5 4 3 26 26 H 1.08997 * 109.47465 * 97.15154 * 1 2 3 27 27 H 1.09002 * 109.47238 * 217.15626 * 1 2 3 28 28 H 1.09000 * 109.47182 * 337.14843 * 1 2 3 29 29 H 1.07998 * 124.30554 * 359.97438 * 3 2 1 30 30 H 1.08994 * 109.47137 * 89.99677 * 8 7 6 31 31 H 1.09002 * 109.46548 * 209.99628 * 8 7 6 32 32 H 1.08996 * 109.46543 * 329.98809 * 8 7 6 33 33 H 0.96995 * 120.00395 * 185.60096 * 11 10 9 34 34 H 1.07995 * 125.80850 * 0.02562 * 13 12 11 35 35 H 0.96994 * 119.99611 * 180.02562 * 19 18 16 36 36 H 1.08003 * 126.24749 * 359.97438 * 24 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2176 1.1113 0.0000 4 16 3.9376 0.7703 -0.0071 5 6 3.6619 -0.9654 0.0007 6 7 4.5172 -1.9959 0.0008 7 6 4.0842 -3.2352 0.0000 8 6 5.0895 -4.3580 0.0008 9 7 2.7968 -3.5309 -0.0003 10 6 1.8745 -2.5797 -0.0006 11 7 0.5302 -2.9044 -0.0015 12 6 0.1315 -4.2468 0.1166 13 6 0.9864 -5.3569 0.2429 14 7 0.2512 -6.4366 0.3285 15 7 -1.0965 -6.0607 0.2612 16 6 -2.1757 -6.9077 0.3171 17 1 -3.1780 -6.5100 0.2562 18 6 -1.9785 -8.2768 0.4521 19 7 -0.7599 -8.7603 0.5256 20 14 -3.4468 -9.4289 0.5288 21 1 -4.2412 -9.3022 -0.7195 22 1 -2.9710 -10.8281 0.6735 23 1 -4.2955 -9.0721 1.6941 24 6 -1.1465 -4.7022 0.1352 25 6 2.2884 -1.2221 0.0003 26 1 -0.3634 -0.1279 -1.0196 27 1 -0.3634 -0.8190 0.6207 28 1 -0.3633 0.9470 0.3991 29 1 1.7939 2.1047 -0.0004 30 1 5.3308 -4.6289 1.0286 31 1 4.6692 -5.2222 -0.5137 32 1 5.9953 -4.0350 -0.5122 33 1 -0.1375 -2.2057 -0.0837 34 1 2.0656 -5.3239 0.2661 35 1 -0.6222 -9.7159 0.6194 36 1 -2.0401 -4.1000 0.0624 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000772023297.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:10 Heat of formation + Delta-G solvation = 141.355136 kcal Electronic energy + Delta-G solvation = -22953.800320 eV Core-core repulsion = 19565.993881 eV Total energy + Delta-G solvation = -3387.806439 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.21917 -41.27367 -38.06428 -37.34897 -35.25871 -33.55927 -32.66874 -32.19473 -29.83923 -29.43470 -28.19681 -26.70281 -24.89019 -24.09923 -22.44733 -21.56538 -20.70299 -19.85480 -19.36134 -18.01911 -17.65913 -17.37058 -16.64404 -16.53677 -16.03838 -15.61454 -15.38165 -15.08870 -14.69676 -14.61833 -14.49855 -13.85128 -13.59407 -13.49941 -13.46858 -13.35394 -13.19888 -13.00320 -12.80855 -12.77229 -12.14851 -12.13457 -11.93531 -11.67432 -11.38524 -10.84687 -10.78667 -10.09136 -10.03677 -9.85183 -9.03254 -8.45962 -8.24392 -6.20670 -0.46742 0.09908 0.19557 0.94762 1.16713 1.33491 1.40227 1.56135 1.78323 1.92443 2.19669 2.39405 2.80304 2.84506 3.09917 3.15164 3.42881 3.57668 3.74899 4.07120 4.34140 4.43670 4.46112 4.58596 4.70902 4.73231 4.76853 4.81565 4.85591 5.00862 5.07942 5.19070 5.30415 5.32898 5.36289 5.73305 5.90551 6.08030 6.41563 6.55033 6.81239 7.29461 7.46554 7.70306 8.52922 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.003365 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.947376 B = 8319.252158 C = 9457.150216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.070 4.070 3 C -0.209 4.209 4 S 0.176 5.824 5 C 0.092 3.908 6 N -0.557 5.557 7 C 0.362 3.638 8 C -0.080 4.080 9 N -0.598 5.598 10 C 0.469 3.531 11 N -0.585 5.585 12 C -0.051 4.051 13 C -0.045 4.045 14 N -0.308 5.308 15 N -0.167 5.167 16 C -0.356 4.356 17 H 0.138 0.862 18 C -0.004 4.004 19 N -0.821 5.821 20 Si 1.017 2.983 21 H -0.255 1.255 22 H -0.277 1.277 23 H -0.255 1.255 24 C -0.084 4.084 25 C -0.254 4.254 26 H 0.088 0.912 27 H 0.060 0.940 28 H 0.109 0.891 29 H 0.212 0.788 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.103 0.897 33 H 0.425 0.575 34 H 0.191 0.809 35 H 0.277 0.723 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 17.708 -1.133 17.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.082 4.082 3 C -0.343 4.343 4 S 0.435 5.565 5 C -0.156 4.156 6 N -0.281 5.281 7 C 0.090 3.910 8 C -0.138 4.138 9 N -0.326 5.326 10 C 0.217 3.783 11 N -0.212 5.212 12 C -0.158 4.158 13 C -0.221 4.221 14 N -0.139 5.139 15 N 0.064 4.936 16 C -0.487 4.487 17 H 0.155 0.845 18 C -0.216 4.216 19 N -0.448 5.448 20 Si 0.836 3.164 21 H -0.179 1.179 22 H -0.202 1.202 23 H -0.179 1.179 24 C -0.235 4.235 25 C -0.272 4.272 26 H 0.107 0.893 27 H 0.079 0.921 28 H 0.128 0.872 29 H 0.229 0.771 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.121 0.879 33 H 0.269 0.731 34 H 0.207 0.793 35 H 0.086 0.914 36 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 4.690 16.334 -0.988 17.022 hybrid contribution -2.311 0.044 -0.050 2.312 sum 2.379 16.377 -1.038 16.582 Atomic orbital electron populations 1.20838 0.87776 1.04620 1.03502 1.19510 0.98004 0.89127 1.01565 1.25278 0.95259 1.03252 1.10474 1.83852 1.05532 0.90425 1.76692 1.24158 0.91504 1.01358 0.98626 1.67926 1.37654 0.98622 1.23920 1.23568 0.89027 0.91600 0.86822 1.20668 0.95475 0.92821 1.04864 1.67853 1.02430 1.35551 1.26773 1.18558 0.85746 0.87351 0.86694 1.41496 1.02780 1.05981 1.70952 1.17390 0.92272 0.84292 1.21829 1.24645 1.01121 0.89051 1.07307 1.78164 0.86605 1.21868 1.27289 1.44818 1.05022 1.03617 1.40100 1.20537 0.85821 0.88689 1.53630 0.84499 1.26815 1.01221 0.99356 0.94192 1.70381 1.23037 1.14633 1.36799 0.84680 0.75874 0.75713 0.80120 1.17883 1.20204 1.17888 1.21866 0.97530 0.85772 1.18355 1.20129 0.95293 0.93655 1.18134 0.89329 0.92133 0.87205 0.77079 0.88366 0.89643 0.87884 0.73057 0.79259 0.91374 0.80092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.76 8.89 71.23 0.63 -1.13 16 2 C -0.07 -1.58 5.96 -18.96 -0.11 -1.70 16 3 C -0.21 -3.69 10.74 66.98 0.72 -2.97 16 4 S 0.18 3.85 23.23 -56.49 -1.31 2.54 16 5 C 0.09 2.94 7.69 84.73 0.65 3.59 16 6 N -0.56 -19.19 10.36 -183.87 -1.90 -21.09 16 7 C 0.36 12.76 7.64 138.82 1.06 13.82 16 8 C -0.08 -2.16 10.31 71.24 0.73 -1.42 16 9 N -0.60 -23.90 6.52 -184.21 -1.20 -25.11 16 10 C 0.47 17.60 7.54 133.97 1.01 18.61 16 11 N -0.59 -21.49 5.49 -184.19 -1.01 -22.50 16 12 C -0.05 -2.34 6.92 37.75 0.26 -2.08 16 13 C -0.04 -2.34 10.85 85.43 0.93 -1.41 16 14 N -0.31 -18.10 10.39 -56.45 -0.59 -18.68 16 15 N -0.17 -9.19 3.74 -190.00 -0.71 -9.90 16 16 C -0.36 -18.69 10.25 84.01 0.86 -17.83 16 17 H 0.14 6.25 7.83 -2.91 -0.02 6.23 16 18 C 0.00 -0.20 5.50 84.95 0.47 0.27 16 19 N -0.82 -46.56 11.81 21.66 0.26 -46.30 16 20 Si 1.02 38.15 29.55 68.60 2.03 40.18 16 21 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 22 H -0.28 -10.29 7.11 99.48 0.71 -9.58 16 23 H -0.25 -8.97 7.11 99.48 0.71 -8.26 16 24 C -0.08 -3.89 11.50 83.37 0.96 -2.93 16 25 C -0.25 -8.05 6.06 -20.26 -0.12 -8.17 16 26 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 27 H 0.06 1.14 5.97 -2.39 -0.01 1.12 16 28 H 0.11 1.09 8.08 -2.39 -0.02 1.07 16 29 H 0.21 1.92 8.06 -2.91 -0.02 1.89 16 30 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 33 H 0.43 12.39 4.97 -92.71 -0.46 11.92 16 34 H 0.19 9.52 5.65 -2.91 -0.02 9.50 16 35 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 36 H 0.18 6.68 8.06 -2.91 -0.02 6.66 16 Total: -1.00 -74.28 321.75 4.30 -69.98 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.69 Total: 34.24 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: 8.05 Total: -3.35 kcal Atomic # 7 Polarization: -138.43 SS G_CDS: -5.16 Total: -143.58 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.18 kcal Atomic # 16 Polarization: 3.85 SS G_CDS: -1.31 Total: 2.54 kcal Total: -74.28 4.30 -69.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000772023297.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.338 kcal (2) G-P(sol) polarization free energy of solvation -74.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds