Wall clock time and date at job start Tue Mar 31 2020 10:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.34215 * 125.43968 * 2 1 4 4 C 1.33648 * 110.90762 * 180.02562 * 3 2 1 5 5 C 1.50697 * 125.80221 * 179.97438 * 4 3 2 6 6 C 1.36416 * 108.39765 * 359.97438 * 4 3 2 7 7 C 1.47386 * 127.19142 * 180.02562 * 6 4 3 8 8 O 1.21612 * 119.99818 * 90.02525 * 7 6 4 9 9 N 1.34771 * 119.99800 * 270.02320 * 7 6 4 10 10 S 1.65608 * 119.99846 * 179.97438 * 9 7 6 11 11 O 1.42095 * 104.27841 * 181.07467 * 10 9 7 12 12 O 1.42102 * 104.27658 * 308.93182 * 10 9 7 13 13 C 1.81406 * 104.44741 * 65.00108 * 10 9 7 14 14 C 1.52991 * 109.46937 * 179.97438 * 13 10 9 15 15 C 1.50698 * 109.47171 * 180.02562 * 14 13 10 16 16 H 1.08003 * 120.00001 * 359.97438 * 15 14 13 17 17 C 1.37879 * 120.00289 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00291 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00036 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47096 * 89.99587 * 19 17 15 21 21 H 1.48494 * 109.47269 * 210.00123 * 19 17 15 22 22 H 1.48506 * 109.46544 * 329.99721 * 19 17 15 23 23 C 1.34180 * 125.43351 * 180.33256 * 2 1 3 24 24 C 1.50701 * 127.02655 * 359.97438 * 23 2 1 25 25 H 1.09004 * 109.46640 * 359.97438 * 1 2 3 26 26 H 1.08992 * 109.47132 * 119.97777 * 1 2 3 27 27 H 1.09000 * 109.47035 * 239.98053 * 1 2 3 28 28 H 1.08998 * 109.47383 * 269.99756 * 5 4 3 29 29 H 1.09009 * 109.46792 * 30.00026 * 5 4 3 30 30 H 1.08998 * 109.47499 * 149.99817 * 5 4 3 31 31 H 0.97002 * 120.00260 * 0.02562 * 9 7 6 32 32 H 1.09000 * 109.47167 * 300.00580 * 13 10 9 33 33 H 1.09000 * 109.46895 * 59.99901 * 13 10 9 34 34 H 1.09008 * 109.47545 * 300.00011 * 14 13 10 35 35 H 1.09000 * 109.47377 * 60.00235 * 14 13 10 36 36 H 0.96998 * 120.00587 * 179.97438 * 18 17 15 37 37 H 1.08994 * 109.46889 * 270.19862 * 24 23 2 38 38 H 1.09004 * 109.47098 * 30.19591 * 24 23 2 39 39 H 1.09000 * 109.46811 * 150.19495 * 24 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2853 1.0935 0.0000 4 6 3.5790 0.7581 -0.0006 5 6 4.7391 1.7200 -0.0013 6 6 3.6710 -0.6029 -0.0004 7 6 4.9025 -1.4127 -0.0003 8 8 5.4103 -1.7469 1.0530 9 7 5.4657 -1.7826 -1.1674 10 16 6.8498 -2.6919 -1.1673 11 8 7.1570 -2.8628 -2.5441 12 8 7.7309 -1.9890 -0.3019 13 6 6.3538 -4.2711 -0.4250 14 6 7.5608 -5.2096 -0.3689 15 6 7.1487 -6.5217 0.2471 16 1 6.1280 -6.6711 0.5671 17 6 8.0748 -7.5311 0.4033 18 7 7.7153 -8.6760 0.9414 19 14 9.8407 -7.2720 -0.1481 20 1 10.6326 -6.7096 0.9751 21 1 10.4253 -8.5722 -0.5637 22 1 9.8678 -6.3281 -1.2943 23 6 2.2850 -1.0933 -0.0063 24 6 1.8308 -2.5302 -0.0141 25 1 -0.3633 1.0277 0.0005 26 1 -0.3633 -0.5134 -0.8901 27 1 -0.3633 -0.5141 0.8898 28 1 5.0183 1.9518 -1.0291 29 1 4.4508 2.6372 0.5126 30 1 5.5871 1.2670 0.5122 31 1 5.0608 -1.5157 -2.0075 32 1 5.9812 -4.0970 0.5844 33 1 5.5684 -4.7256 -1.0288 34 1 7.9330 -5.3837 -1.3786 35 1 8.3466 -4.7553 0.2346 36 1 8.3667 -9.3863 1.0510 37 1 1.7183 -2.8812 1.0116 38 1 0.8742 -2.6061 -0.5311 39 1 2.5714 -3.1425 -0.5286 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776116012.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:06 Heat of formation + Delta-G solvation = -137.247308 kcal Electronic energy + Delta-G solvation = -24405.378087 eV Core-core repulsion = 20633.596118 eV Total energy + Delta-G solvation = -3771.781969 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.71053 -41.10603 -38.39092 -37.34036 -36.00934 -35.77143 -35.22591 -34.04423 -33.54478 -30.62933 -29.22542 -27.99422 -26.09537 -24.78707 -23.25978 -21.97547 -20.88612 -20.52133 -19.57041 -18.91531 -18.56459 -17.52299 -17.42341 -17.11779 -16.70506 -16.45383 -16.13715 -15.83640 -15.38845 -14.85593 -14.67297 -14.43993 -14.40839 -14.05985 -13.86648 -13.83150 -13.72150 -13.48223 -13.47413 -13.35648 -13.35183 -13.14371 -13.07877 -13.04281 -12.39867 -12.28994 -12.21041 -11.99688 -11.77224 -11.69739 -11.26101 -10.86004 -10.58881 -9.32373 -8.37824 -6.44564 -1.13900 0.48173 0.71733 1.05734 1.31425 1.32841 1.33359 1.43727 1.73804 2.28830 2.40783 2.89442 2.95738 3.16087 3.42978 3.68789 3.79190 3.86580 3.93020 4.04284 4.26890 4.36474 4.47762 4.53321 4.60284 4.68779 4.78941 4.82902 4.86681 4.96275 4.97661 5.01362 5.06034 5.16362 5.43124 5.47491 5.50408 6.01902 6.13915 6.19984 6.60689 7.19489 8.77800 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.020928 B = 0.003634 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.611263 B = 7702.951209 C = 8515.755428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.007 4.007 3 O -0.171 6.171 4 C 0.058 3.942 5 C -0.091 4.091 6 C -0.266 4.266 7 C 0.624 3.376 8 O -0.517 6.517 9 N -1.030 6.030 10 S 2.600 3.400 11 O -0.958 6.958 12 O -0.967 6.967 13 C -0.579 4.579 14 C -0.014 4.014 15 C -0.530 4.530 16 H 0.047 0.953 17 C 0.014 3.986 18 N -0.939 5.939 19 Si 0.927 3.073 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.244 1.244 23 C -0.162 4.162 24 C -0.092 4.092 25 H 0.089 0.911 26 H 0.106 0.894 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.450 0.550 32 H 0.131 0.869 33 H 0.151 0.849 34 H 0.044 0.956 35 H 0.030 0.970 36 H 0.271 0.729 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.640 22.257 -6.439 27.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.056 4.056 3 O -0.068 6.068 4 C 0.006 3.994 5 C -0.146 4.146 6 C -0.273 4.273 7 C 0.411 3.589 8 O -0.390 6.390 9 N -0.796 5.796 10 S 2.698 3.302 11 O -0.948 6.948 12 O -0.957 6.957 13 C -0.712 4.712 14 C -0.053 4.053 15 C -0.569 4.569 16 H 0.066 0.934 17 C -0.184 4.184 18 N -0.578 5.578 19 Si 0.749 3.251 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.168 1.168 23 C -0.163 4.163 24 C -0.149 4.149 25 H 0.108 0.892 26 H 0.124 0.876 27 H 0.117 0.883 28 H 0.132 0.868 29 H 0.127 0.873 30 H 0.100 0.900 31 H 0.290 0.710 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.120 0.880 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.501 22.465 -5.961 27.395 hybrid contribution 0.355 -0.959 0.058 1.024 sum -14.146 21.506 -5.903 26.409 Atomic orbital electron populations 1.20549 0.81551 1.05393 1.05249 1.22719 0.95333 0.82185 1.05323 1.83713 1.15646 1.35685 1.71712 1.22880 0.84208 0.92856 0.99464 1.20709 0.90293 0.97676 1.05969 1.20809 0.93190 0.94059 1.19199 1.17547 0.82548 0.76834 0.81973 1.91000 1.62833 1.53581 1.31607 1.54902 1.45467 1.63181 1.16049 1.05463 0.73490 0.77035 0.74213 1.93589 1.81846 1.86911 1.32499 1.93568 1.62389 1.70980 1.68738 1.30180 1.10104 1.16728 1.14182 1.19389 0.92610 0.94746 0.98594 1.21108 0.97542 0.97259 1.40979 0.93437 1.25885 1.03540 0.94570 0.94455 1.70004 1.36917 1.05623 1.45283 0.86003 0.79612 0.79015 0.80506 1.18821 1.19587 1.16761 1.21264 0.88843 0.97894 1.08342 1.20343 1.02775 0.88768 1.03013 0.89218 0.87573 0.88334 0.86837 0.87347 0.90038 0.71020 0.85028 0.83083 0.93818 0.95135 0.92005 0.91112 0.88024 0.92128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.55 9.94 71.24 0.71 0.16 16 2 C -0.01 -0.12 7.28 24.76 0.18 0.06 16 3 O -0.17 -3.22 10.52 4.50 0.05 -3.17 16 4 C 0.06 1.18 7.37 25.26 0.19 1.37 16 5 C -0.09 -1.31 10.24 71.23 0.73 -0.58 16 6 C -0.27 -6.47 6.07 -18.99 -0.12 -6.58 16 7 C 0.62 18.27 6.99 86.65 0.61 18.88 16 8 O -0.52 -19.49 15.21 12.30 0.19 -19.30 16 9 N -1.03 -26.30 5.60 -175.92 -0.99 -27.28 16 10 S 2.60 89.05 5.11 -56.49 -0.29 88.76 16 11 O -0.96 -34.23 18.08 -127.65 -2.31 -36.54 16 12 O -0.97 -39.74 17.04 -120.72 -2.06 -41.80 16 13 C -0.58 -22.40 5.82 71.98 0.42 -21.98 16 14 C -0.01 -0.68 4.05 29.84 0.12 -0.56 16 15 C -0.53 -30.67 9.66 25.60 0.25 -30.42 16 16 H 0.05 2.95 7.99 -2.91 -0.02 2.92 16 17 C 0.01 0.84 5.47 84.66 0.46 1.30 16 18 N -0.94 -58.38 13.96 21.45 0.30 -58.08 16 19 Si 0.93 44.12 27.47 68.60 1.88 46.00 16 20 H -0.26 -12.17 7.11 99.48 0.71 -11.47 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.24 -10.84 6.54 99.48 0.65 -10.19 16 23 C -0.16 -3.32 6.38 -18.49 -0.12 -3.44 16 24 C -0.09 -1.62 10.15 71.24 0.72 -0.90 16 25 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 26 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 27 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.11 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 1.46 7.93 -2.39 -0.02 1.44 16 31 H 0.45 7.75 8.77 -96.74 -0.85 6.90 16 32 H 0.13 5.25 7.19 -2.39 -0.02 5.23 16 33 H 0.15 5.00 8.14 -2.39 -0.02 4.98 16 34 H 0.04 2.01 7.20 -2.38 -0.02 1.99 16 35 H 0.03 1.46 7.57 -2.39 -0.02 1.44 16 36 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.10 1.13 7.90 -2.38 -0.02 1.11 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -81.55 351.15 1.11 -80.44 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: 0.18 Total: 13.67 kcal Atomic # 6 Polarization: -46.85 SS G_CDS: 4.15 Total: -42.71 kcal Atomic # 7 Polarization: -84.68 SS G_CDS: -0.69 Total: -85.36 kcal Atomic # 8 Polarization: -96.67 SS G_CDS: -4.13 Total: -100.80 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Atomic # 16 Polarization: 89.05 SS G_CDS: -0.29 Total: 88.76 kcal Total: -81.55 1.11 -80.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776116012.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.806 kcal (2) G-P(sol) polarization free energy of solvation -81.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds