Wall clock time and date at job start Tue Mar 31 2020 10:30:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34519 * 125.79116 * 2 1 4 4 C 1.41387 * 106.83802 * 180.02562 * 3 2 1 5 5 C 1.34506 * 106.84112 * 359.97438 * 4 3 2 6 6 C 1.50700 * 125.78701 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47210 * 0.02562 * 6 5 4 8 8 C 1.53000 * 109.47313 * 240.00337 * 6 5 4 9 9 C 1.50702 * 109.46869 * 120.00225 * 6 5 4 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 6 5 11 11 N 1.34777 * 119.99928 * 179.72354 * 9 6 5 12 12 S 1.65603 * 120.00017 * 180.27533 * 11 9 6 13 13 O 1.42102 * 104.27468 * 181.07230 * 12 11 9 14 14 O 1.42102 * 104.27712 * 308.93122 * 12 11 9 15 15 C 1.81398 * 104.44829 * 65.00347 * 12 11 9 16 16 C 1.53003 * 109.47288 * 180.02562 * 15 12 11 17 17 C 1.50703 * 109.47047 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99975 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99472 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00199 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99677 * 179.97438 * 19 17 16 22 22 H 1.48510 * 109.47342 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47287 * 120.00084 * 21 19 17 24 24 H 1.48498 * 109.47438 * 240.00320 * 21 19 17 25 25 O 1.34301 * 108.42387 * 0.26914 * 5 4 3 26 26 H 1.08998 * 109.47196 * 89.99634 * 1 2 3 27 27 H 1.08998 * 109.47222 * 210.00222 * 1 2 3 28 28 H 1.09007 * 109.47056 * 330.00158 * 1 2 3 29 29 H 1.07997 * 126.57995 * 0.02562 * 3 2 1 30 30 H 1.08005 * 126.57283 * 180.02562 * 4 3 2 31 31 H 1.08996 * 109.46783 * 299.99678 * 8 6 5 32 32 H 1.08994 * 109.47175 * 60.00247 * 8 6 5 33 33 H 1.09001 * 109.46739 * 179.97438 * 8 6 5 34 34 H 0.97000 * 120.00317 * 0.28382 * 11 9 6 35 35 H 1.08997 * 109.46903 * 300.00169 * 15 12 11 36 36 H 1.09003 * 109.47146 * 60.00111 * 15 12 11 37 37 H 1.09004 * 109.46860 * 299.99854 * 16 15 12 38 38 H 1.08996 * 109.46792 * 59.99595 * 16 15 12 39 39 H 0.96997 * 119.99920 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0912 0.0000 4 6 3.6309 0.6319 -0.0006 5 6 3.5814 -0.7122 -0.0004 6 6 4.7705 -1.6379 -0.0014 7 1 5.6885 -1.0502 -0.0019 8 6 4.7288 -2.5205 -1.2505 9 6 4.7316 -2.5069 1.2293 10 8 3.8271 -2.3867 2.0282 11 7 5.6988 -3.4219 1.4390 12 16 5.6523 -4.3815 2.7878 13 8 6.8195 -5.1857 2.6861 14 8 5.4839 -3.4673 3.8627 15 6 4.1618 -5.3927 2.5728 16 6 4.0060 -6.3326 3.7700 17 6 2.7680 -7.1732 3.5910 18 1 2.1536 -7.0491 2.7115 19 6 2.4199 -8.1005 4.5500 20 7 3.1679 -8.2512 5.6213 21 14 0.8851 -9.1419 4.3285 22 1 0.2227 -8.7816 3.0491 23 1 1.2609 -10.5783 4.3034 24 1 -0.0483 -8.8942 5.4566 25 8 2.2924 -1.0894 -0.0056 26 1 -0.3633 0.0001 -1.0276 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5138 29 1 1.9666 2.1204 0.0004 30 1 4.5213 1.2433 -0.0004 31 1 3.8109 -3.1082 -1.2495 32 1 4.7570 -1.8920 -2.1405 33 1 5.5892 -3.1897 -1.2513 34 1 6.4221 -3.5182 0.7999 35 1 3.2890 -4.7434 2.5050 36 1 4.2498 -5.9798 1.6586 37 1 4.8789 -6.9819 3.8381 38 1 3.9179 -5.7452 4.6839 39 1 2.9228 -8.9034 6.2961 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000776124087.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:56 Heat of formation + Delta-G solvation = -138.035076 kcal Electronic energy + Delta-G solvation = -24356.935153 eV Core-core repulsion = 20585.119023 eV Total energy + Delta-G solvation = -3771.816129 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.58818 -41.31792 -38.34820 -37.27458 -36.07150 -35.89581 -35.04112 -34.07506 -33.20923 -31.93336 -27.69200 -27.41024 -25.71928 -23.69707 -22.84928 -22.64234 -21.04733 -20.77625 -19.46133 -18.89528 -18.39790 -17.50021 -17.31247 -17.06866 -16.73648 -16.56250 -16.42433 -15.78782 -15.35762 -15.14821 -14.55657 -14.44575 -13.99152 -13.90007 -13.81004 -13.70248 -13.67912 -13.44973 -13.40372 -13.28922 -13.00970 -12.97322 -12.86910 -12.60049 -12.47378 -12.36665 -12.25821 -12.05532 -11.77664 -11.36688 -11.09291 -10.77598 -10.68478 -9.22360 -8.29647 -6.43788 -1.05677 0.70907 0.92583 1.36182 1.38419 1.39737 1.53060 1.70626 1.98492 2.34837 2.51679 2.95842 3.03825 3.17930 3.43056 3.79369 3.89387 3.97272 3.99190 4.02279 4.15622 4.23455 4.56393 4.65072 4.69918 4.74696 4.79496 4.86813 4.93020 5.06885 5.18803 5.19983 5.22030 5.30187 5.61414 5.64289 5.68360 6.01228 6.25785 6.34993 6.68637 7.26228 8.83075 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.013329 B = 0.003959 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2100.218491 B = 7071.213501 C = 8512.980893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.029 4.029 3 C -0.225 4.225 4 C -0.199 4.199 5 C -0.027 4.027 6 C -0.018 4.018 7 H 0.178 0.822 8 C -0.150 4.150 9 C 0.532 3.468 10 O -0.524 6.524 11 N -1.032 6.032 12 S 2.600 3.400 13 O -0.966 6.966 14 O -0.979 6.979 15 C -0.579 4.579 16 C 0.023 3.977 17 C -0.541 4.541 18 H 0.072 0.928 19 C -0.002 4.002 20 N -0.932 5.932 21 Si 0.975 3.025 22 H -0.258 1.258 23 H -0.273 1.273 24 H -0.278 1.278 25 O -0.188 6.188 26 H 0.098 0.902 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.170 0.830 30 H 0.175 0.825 31 H 0.052 0.948 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.453 0.547 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.018 0.982 38 H 0.003 0.997 39 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.925 17.755 -19.843 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.079 4.079 3 C -0.244 4.244 4 C -0.218 4.218 5 C -0.077 4.077 6 C -0.041 4.041 7 H 0.195 0.805 8 C -0.207 4.207 9 C 0.319 3.681 10 O -0.397 6.397 11 N -0.800 5.800 12 S 2.699 3.301 13 O -0.956 6.956 14 O -0.969 6.969 15 C -0.712 4.712 16 C -0.016 4.016 17 C -0.580 4.580 18 H 0.090 0.910 19 C -0.200 4.200 20 N -0.571 5.571 21 Si 0.799 3.201 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.204 1.204 25 O -0.085 6.085 26 H 0.117 0.883 27 H 0.086 0.914 28 H 0.125 0.875 29 H 0.187 0.813 30 H 0.193 0.807 31 H 0.072 0.928 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.294 0.706 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.036 0.964 38 H 0.022 0.978 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.858 17.510 -18.425 25.486 hybrid contribution -0.716 -0.705 0.076 1.008 sum 1.142 16.805 -18.348 24.907 Atomic orbital electron populations 1.20471 0.83367 1.04689 1.04659 1.23205 0.95521 0.84150 1.05016 1.21899 0.92627 1.00220 1.09668 1.21935 0.99477 0.93219 1.07155 1.21950 0.82930 0.94550 1.08271 1.20230 0.96178 0.94898 0.92765 0.80517 1.21969 1.04346 0.99834 0.94552 1.21364 0.79391 0.79228 0.88093 1.90944 1.34709 1.67255 1.46786 1.54806 1.34764 1.46854 1.43546 1.05370 0.76719 0.74585 0.73457 1.93569 1.46196 1.70252 1.85592 1.93550 1.87353 1.62555 1.53471 1.30241 1.18600 1.12703 1.09692 1.18834 0.98770 0.93483 0.90549 1.21485 1.09371 1.20142 1.06971 0.90973 1.26108 1.00814 0.98580 0.94542 1.70098 1.40393 1.36081 1.10571 0.85243 0.78103 0.78081 0.78694 1.18195 1.19780 1.20386 1.83956 1.16965 1.36201 1.71410 0.88324 0.91368 0.87497 0.81296 0.80743 0.92833 0.88196 0.87762 0.70587 0.85321 0.82912 0.96396 0.97828 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.42 71.24 0.74 -0.45 16 2 C -0.03 -0.66 7.32 24.83 0.18 -0.48 16 3 C -0.23 -4.54 10.81 22.19 0.24 -4.30 16 4 C -0.20 -3.92 10.78 22.19 0.24 -3.69 16 5 C -0.03 -0.61 5.19 24.83 0.13 -0.48 16 6 C -0.02 -0.30 3.13 -12.29 -0.04 -0.34 16 7 H 0.18 1.32 8.10 -2.38 -0.02 1.30 16 8 C -0.15 -1.62 9.07 71.98 0.65 -0.97 16 9 C 0.53 13.97 6.89 87.66 0.60 14.57 16 10 O -0.52 -19.74 13.91 19.22 0.27 -19.47 16 11 N -1.03 -24.07 5.49 -173.53 -0.95 -25.02 16 12 S 2.60 95.30 5.11 -56.49 -0.29 95.02 16 13 O -0.97 -37.45 18.08 -127.65 -2.31 -39.76 16 14 O -0.98 -44.72 17.04 -120.72 -2.06 -46.78 16 15 C -0.58 -23.74 5.82 71.98 0.42 -23.32 16 16 C 0.02 1.23 4.98 29.85 0.15 1.38 16 17 C -0.54 -31.09 9.11 25.60 0.23 -30.86 16 18 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 19 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 20 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 21 Si 0.98 44.30 29.54 68.60 2.03 46.33 16 22 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 25 O -0.19 -5.26 10.36 3.62 0.04 -5.22 16 26 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.17 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.10 0.51 7.56 -2.39 -0.02 0.49 16 34 H 0.45 5.61 8.20 -96.75 -0.79 4.82 16 35 H 0.13 5.34 7.19 -2.39 -0.02 5.33 16 36 H 0.15 5.15 8.14 -2.39 -0.02 5.13 16 37 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -88.82 351.47 1.30 -87.52 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.28 Total: 13.19 kcal Atomic # 6 Polarization: -52.58 SS G_CDS: 4.01 Total: -48.57 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -0.67 Total: -82.25 kcal Atomic # 8 Polarization: -107.17 SS G_CDS: -4.06 Total: -111.23 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: 95.30 SS G_CDS: -0.29 Total: 95.02 kcal Total: -88.82 1.30 -87.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000776124087.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.519 kcal (2) G-P(sol) polarization free energy of solvation -88.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds