Wall clock time and date at job start Tue Mar 31 2020 10:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.41201 * 126.68206 * 2 1 4 4 C 1.37195 * 103.80642 * 180.13529 * 3 2 1 5 5 C 1.46708 * 126.98084 * 179.87202 * 4 3 2 6 6 O 1.21305 * 119.99699 * 359.71355 * 5 4 3 7 7 C 1.50693 * 120.00003 * 179.70696 * 5 4 3 8 8 O 1.45197 * 109.47129 * 179.97438 * 7 5 4 9 9 C 1.34713 * 117.00089 * 180.02562 * 8 7 5 10 10 O 1.21467 * 119.99530 * 0.02562 * 9 8 7 11 11 C 1.47761 * 119.99915 * 180.02562 * 9 8 7 12 12 C 1.39964 * 120.03287 * 359.95596 * 11 9 8 13 13 C 1.38318 * 120.35273 * 179.97438 * 12 11 9 14 14 C 1.37756 * 120.42165 * 0.05008 * 13 12 11 15 15 C 1.40756 * 120.05025 * 359.97210 * 14 13 12 16 16 C 1.41437 * 120.17935 * 180.02562 * 15 14 13 17 17 H 1.07995 * 119.99868 * 150.17573 * 16 15 14 18 18 C 1.39939 * 119.99658 * 330.18336 * 16 15 14 19 19 N 1.30819 * 119.99876 * 161.73226 * 18 16 15 20 20 Si 1.86802 * 119.99860 * 341.72131 * 18 16 15 21 21 H 1.48500 * 109.46814 * 95.42188 * 20 18 16 22 22 H 1.48493 * 109.47000 * 215.41635 * 20 18 16 23 23 H 1.48493 * 109.47298 * 335.41781 * 20 18 16 24 24 C 1.39050 * 120.02919 * 179.97438 * 11 9 8 25 25 O 1.34740 * 106.03671 * 359.61123 * 4 3 2 26 26 N 1.20876 * 111.44852 * 0.26243 * 25 4 3 27 27 H 1.09002 * 109.47031 * 270.28403 * 1 2 3 28 28 H 1.08998 * 109.46698 * 30.28164 * 1 2 3 29 29 H 1.09000 * 109.46728 * 150.28219 * 1 2 3 30 30 H 1.07993 * 128.09974 * 0.04541 * 3 2 1 31 31 H 1.09002 * 109.46784 * 60.00327 * 7 5 4 32 32 H 1.09000 * 109.47439 * 300.00670 * 7 5 4 33 33 H 1.08002 * 119.82441 * 0.04367 * 12 11 9 34 34 H 1.08004 * 119.78815 * 180.02562 * 13 12 11 35 35 H 1.07997 * 119.97679 * 180.02562 * 14 13 12 36 36 H 0.97007 * 120.00229 * 179.97438 * 19 18 16 37 37 H 1.07996 * 120.20748 * 0.25324 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3506 1.1324 0.0000 4 6 3.6146 0.5991 -0.0031 5 6 4.8833 1.3358 -0.0071 6 8 4.8802 2.5488 -0.0132 7 6 6.1902 0.5856 -0.0036 8 8 7.2915 1.5319 -0.0092 9 6 8.5376 1.0202 -0.0075 10 8 8.6997 -0.1836 -0.0019 11 6 9.7071 1.9232 -0.0123 12 6 9.5210 3.3104 -0.0197 13 6 10.6110 4.1619 -0.0238 14 6 11.8920 3.6551 -0.0217 15 6 12.0992 2.2629 -0.0147 16 6 13.4133 1.7397 -0.0120 17 1 13.6147 0.7884 0.4579 18 6 14.4523 2.4547 -0.6181 19 7 15.6962 2.1776 -0.3227 20 14 14.0631 3.8048 -1.8491 21 1 14.0510 5.1181 -1.1561 22 1 15.0976 3.8167 -2.9142 23 1 12.7312 3.5528 -2.4555 24 6 10.9937 1.3957 -0.0100 25 8 3.4542 -0.7387 0.0041 26 7 2.2845 -1.0437 0.0057 27 1 -0.3633 0.0051 1.0277 28 1 -0.3633 0.8875 -0.5182 29 1 -0.3633 -0.8925 -0.5095 30 1 2.0671 2.1744 0.0007 31 1 6.2493 -0.0454 -0.8904 32 1 6.2497 -0.0365 0.8895 33 1 8.5209 3.7182 -0.0211 34 1 10.4569 5.2308 -0.0290 35 1 12.7379 4.3265 -0.0244 36 1 16.4166 2.6730 -0.7430 37 1 11.1423 0.3260 -0.0088 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777043517.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:35 Heat of formation + Delta-G solvation = -52.397023 kcal Electronic energy + Delta-G solvation = -24089.226295 eV Core-core repulsion = 20185.679759 eV Total energy + Delta-G solvation = -3903.546536 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.14572 -41.77006 -40.55560 -39.38026 -37.47434 -35.99521 -35.59253 -33.54340 -32.69998 -31.92820 -30.41493 -29.61791 -27.21549 -25.75150 -24.50129 -23.97893 -22.55508 -22.03153 -20.81164 -19.83071 -18.98675 -18.77880 -18.44448 -17.96501 -17.74186 -17.25341 -16.80356 -16.49105 -16.06072 -15.90765 -15.57520 -14.92930 -14.77330 -14.59785 -14.27831 -14.24839 -14.19991 -13.96382 -13.82540 -13.64705 -13.38923 -12.87188 -12.70815 -12.42744 -12.36505 -11.97550 -11.87029 -11.73134 -11.53943 -11.39804 -11.18991 -11.06157 -10.93309 -9.74172 -9.64618 -8.91584 -6.55602 -0.69706 -0.07980 0.71067 0.84972 1.11172 1.27295 1.28391 1.42557 1.47349 1.62529 1.69606 2.11912 2.58362 2.64025 3.00659 3.38996 3.44145 3.70135 3.84922 3.89684 3.95815 4.07910 4.23570 4.28686 4.42802 4.54537 4.66560 4.69181 4.77673 4.83778 4.85980 5.00897 5.14806 5.16615 5.36376 5.60862 5.68670 5.81593 5.84597 6.06807 6.27712 6.59854 6.64673 6.73518 6.91827 8.16788 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.039361 B = 0.002304 C = 0.002218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 711.186147 B =12147.880758 C =12618.732138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.011 3.989 3 C -0.133 4.133 4 C -0.118 4.118 5 C 0.462 3.538 6 O -0.424 6.424 7 C 0.014 3.986 8 O -0.337 6.337 9 C 0.523 3.477 10 O -0.530 6.530 11 C -0.104 4.104 12 C -0.166 4.166 13 C -0.087 4.087 14 C -0.213 4.213 15 C 0.063 3.937 16 C -0.483 4.483 17 H 0.056 0.944 18 C 0.047 3.953 19 N -0.844 5.844 20 Si 0.962 3.038 21 H -0.247 1.247 22 H -0.277 1.277 23 H -0.251 1.251 24 C -0.153 4.153 25 O 0.118 5.882 26 N -0.364 5.364 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.208 0.792 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.111 0.889 36 H 0.296 0.704 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.315 1.843 -1.152 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.147 4.147 3 C -0.154 4.154 4 C -0.181 4.181 5 C 0.335 3.665 6 O -0.295 6.295 7 C -0.060 4.060 8 O -0.253 6.253 9 C 0.371 3.629 10 O -0.421 6.421 11 C -0.105 4.105 12 C -0.185 4.185 13 C -0.105 4.105 14 C -0.232 4.232 15 C 0.060 3.940 16 C -0.513 4.513 17 H 0.074 0.926 18 C -0.168 4.168 19 N -0.470 5.470 20 Si 0.784 3.216 21 H -0.172 1.172 22 H -0.204 1.204 23 H -0.174 1.174 24 C -0.173 4.173 25 O 0.045 5.955 26 N -0.067 5.067 27 H 0.116 0.884 28 H 0.127 0.873 29 H 0.101 0.899 30 H 0.225 0.775 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.128 0.872 36 H 0.106 0.894 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -27.252 0.831 -1.140 27.288 hybrid contribution 0.647 0.394 -0.235 0.793 sum -26.605 1.226 -1.375 26.668 Atomic orbital electron populations 1.20440 0.82538 1.05508 1.05079 1.24299 1.01080 0.87502 1.01779 1.23490 0.89306 1.03015 0.99587 1.24277 0.97513 0.84765 1.11569 1.20633 0.86231 0.87785 0.71846 1.90688 1.88341 1.15180 1.35270 1.23485 0.82628 0.91893 1.07945 1.86597 1.14371 1.39881 1.84445 1.21458 0.82946 0.87033 0.71506 1.90784 1.86755 1.17045 1.47554 1.18906 0.89375 0.93687 1.08550 1.21105 0.99555 0.90812 1.07013 1.21054 0.91351 1.00353 0.97716 1.21479 0.97530 0.94504 1.09713 1.17741 0.92670 0.92361 0.91202 1.19427 0.91552 1.06317 1.33966 0.92564 1.26860 0.93801 0.98794 0.97370 1.69712 1.01297 1.39072 1.36939 0.85538 0.79441 0.78475 0.78122 1.17194 1.20351 1.17435 1.21227 0.90762 0.98833 1.06468 1.85039 1.21400 1.21903 1.67207 1.73763 0.89618 1.25557 1.17717 0.88403 0.87334 0.89949 0.77485 0.85232 0.85218 0.84057 0.83550 0.87178 0.89374 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.47 71.24 0.75 0.28 16 2 C 0.01 0.15 7.31 43.54 0.32 0.46 16 3 C -0.13 -1.79 10.92 22.75 0.25 -1.54 16 4 C -0.12 -2.03 7.20 24.24 0.17 -1.85 16 5 C 0.46 9.37 7.21 27.90 0.20 9.57 16 6 O -0.42 -10.78 17.06 15.69 0.27 -10.51 16 7 C 0.01 0.32 5.81 71.23 0.41 0.73 16 8 O -0.34 -10.31 8.99 -49.84 -0.45 -10.76 16 9 C 0.52 19.49 7.90 70.34 0.56 20.04 16 10 O -0.53 -21.45 16.12 19.94 0.32 -21.13 16 11 C -0.10 -4.31 5.87 -20.15 -0.12 -4.42 16 12 C -0.17 -6.12 9.62 22.71 0.22 -5.91 16 13 C -0.09 -3.23 10.01 22.17 0.22 -3.01 16 14 C -0.21 -9.42 7.17 22.77 0.16 -9.26 16 15 C 0.06 3.15 5.10 -21.32 -0.11 3.04 16 16 C -0.48 -26.83 9.57 23.47 0.22 -26.60 16 17 H 0.06 3.40 8.06 -2.91 -0.02 3.37 16 18 C 0.05 2.46 5.40 85.26 0.46 2.92 16 19 N -0.84 -45.45 13.93 21.82 0.30 -45.15 16 20 Si 0.96 40.66 24.52 68.60 1.68 42.34 16 21 H -0.25 -9.54 6.71 99.48 0.67 -8.87 16 22 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.25 -10.79 6.86 99.48 0.68 -10.10 16 24 C -0.15 -7.30 9.34 23.02 0.21 -7.08 16 25 O 0.12 2.23 11.16 64.85 0.72 2.96 16 26 N -0.36 -6.95 12.04 -48.70 -0.59 -7.54 16 27 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.14 4.47 7.59 -2.91 -0.02 4.45 16 34 H 0.15 4.25 8.06 -2.91 -0.02 4.23 16 35 H 0.11 4.75 4.72 -2.91 -0.01 4.74 16 36 H 0.30 14.20 8.30 -92.70 -0.77 13.43 16 37 H 0.10 5.12 7.64 -2.91 -0.02 5.09 16 Total: -1.00 -66.13 336.50 7.26 -58.87 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: 1.06 Total: 13.58 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: 3.93 Total: -22.65 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: -0.28 Total: -52.69 kcal Atomic # 8 Polarization: -40.32 SS G_CDS: 0.86 Total: -39.45 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 1.68 Total: 42.34 kcal Total: -66.13 7.26 -58.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777043517.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.470 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds