Wall clock time and date at job start Tue Mar 31 2020 10:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41208 * 126.67986 * 2 1 4 4 C 1.37193 * 103.80526 * 180.11826 * 3 2 1 5 5 C 1.46703 * 126.97865 * 179.87601 * 4 3 2 6 6 O 1.21308 * 120.00257 * 359.71348 * 5 4 3 7 7 C 1.50707 * 119.99980 * 179.97438 * 5 4 3 8 8 O 1.45201 * 109.47223 * 179.72735 * 7 5 4 9 9 C 1.34770 * 116.99838 * 180.02562 * 8 7 5 10 10 O 1.21506 * 120.00368 * 359.97438 * 9 8 7 11 11 C 1.47515 * 119.99765 * 179.97438 * 9 8 7 12 12 C 1.40062 * 119.90076 * 359.72183 * 11 9 8 13 13 C 1.36296 * 120.10207 * 179.71896 * 12 11 9 14 14 C 1.40895 * 119.89723 * 0.55643 * 13 12 11 15 15 C 1.41092 * 120.10462 * 179.69986 * 14 13 12 16 16 H 1.08002 * 120.00520 * 204.67308 * 15 14 13 17 17 C 1.40248 * 119.99781 * 24.65937 * 15 14 13 18 18 N 1.30633 * 119.99623 * 17.87913 * 17 15 14 19 19 Si 1.86793 * 120.00162 * 197.86912 * 17 15 14 20 20 H 1.48502 * 109.47099 * 90.00550 * 19 17 15 21 21 H 1.48498 * 109.47437 * 210.00486 * 19 17 15 22 22 H 1.48504 * 109.47385 * 330.00617 * 19 17 15 23 23 C 1.40900 * 119.80430 * 359.72013 * 14 13 12 24 24 C 1.36302 * 119.89391 * 359.97438 * 23 14 13 25 25 O 1.34738 * 106.03813 * 359.61783 * 4 3 2 26 26 N 1.20874 * 111.44847 * 0.25975 * 25 4 3 27 27 H 1.09006 * 109.46860 * 270.30173 * 1 2 3 28 28 H 1.08995 * 109.47191 * 30.29705 * 1 2 3 29 29 H 1.08999 * 109.47258 * 150.30735 * 1 2 3 30 30 H 1.07992 * 128.09549 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.46653 * 299.72521 * 7 5 4 32 32 H 1.08991 * 109.46869 * 59.72356 * 7 5 4 33 33 H 1.08007 * 119.95135 * 0.02562 * 12 11 9 34 34 H 1.08006 * 120.05606 * 180.27911 * 13 12 11 35 35 H 0.97001 * 119.99861 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.05697 * 179.97438 * 23 14 13 37 37 H 1.08001 * 119.94928 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3505 1.1325 0.0000 4 6 3.6145 0.5992 -0.0027 5 6 4.8831 1.3359 -0.0065 6 8 4.8800 2.5490 -0.0126 7 6 6.1902 0.5858 -0.0086 8 8 7.2914 1.5321 -0.0187 9 6 8.5381 1.0201 -0.0223 10 8 8.7004 -0.1840 -0.0167 11 6 9.7056 1.9217 -0.0331 12 6 9.5161 3.3094 -0.0454 13 6 10.5919 4.1462 -0.0496 14 6 11.8962 3.6133 -0.0534 15 6 13.0129 4.4755 -0.0642 16 1 13.9578 4.1306 -0.4576 17 6 12.8960 5.7806 0.4358 18 7 11.8958 6.0941 1.2155 19 14 14.1704 7.0704 -0.0130 20 1 13.7486 7.7731 -1.2514 21 1 14.2936 8.0513 1.0951 22 1 15.4822 6.4123 -0.2397 23 6 12.0820 2.2166 -0.0468 24 6 11.0003 1.3874 -0.0363 25 8 3.4542 -0.7386 0.0045 26 7 2.2845 -1.0436 0.0059 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8927 -0.5090 30 1 2.0669 2.1745 -0.0004 31 1 6.2536 -0.0360 0.8844 32 1 6.2453 -0.0454 -0.8954 33 1 8.5159 3.7170 -0.0466 34 1 10.4449 5.2162 -0.0546 35 1 11.8151 6.9967 1.5616 36 1 13.0800 1.8037 -0.0501 37 1 11.1418 0.3167 -0.0317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777063412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:39 Heat of formation + Delta-G solvation = -43.481799 kcal Electronic energy + Delta-G solvation = -24013.400424 eV Core-core repulsion = 20110.240481 eV Total energy + Delta-G solvation = -3903.159943 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.36145 -40.11410 -39.13233 -37.44538 -35.66711 -35.28040 -33.97778 -32.65375 -30.54691 -29.52963 -29.35714 -28.92404 -26.16417 -24.14311 -23.24115 -22.26688 -20.98247 -20.04665 -19.90197 -18.16490 -18.03317 -17.58267 -16.93727 -16.51966 -16.24820 -15.88172 -15.52904 -14.86260 -14.50819 -14.19517 -14.03285 -13.82211 -13.62950 -13.43844 -13.23838 -13.03097 -12.71199 -12.53462 -12.13024 -11.88910 -11.74383 -11.44698 -11.33790 -11.01806 -10.74857 -10.51704 -10.42204 -10.40909 -10.15121 -10.10004 -9.65127 -9.50661 -9.40110 -7.77685 -7.66881 -7.11913 -4.70255 0.20107 1.59731 2.00100 2.19678 2.28167 2.85166 2.91834 2.92271 2.94832 3.01916 3.57375 3.64022 3.68874 3.82094 4.23498 4.43479 4.59944 4.71231 4.95763 5.01840 5.08748 5.13385 5.20685 5.27110 5.49480 5.59607 5.81387 6.19658 6.24345 6.71615 6.78816 6.84393 6.92026 6.97127 7.06250 7.39645 7.63771 7.68917 7.75628 7.81673 7.98202 8.33378 8.54036 8.62551 8.67280 9.79150 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.002280 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.584716 B =12279.849204 C =13149.263019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 C -0.149 4.149 4 C -0.103 4.103 5 C 0.441 3.559 6 O -0.394 6.394 7 C 0.027 3.973 8 O -0.343 6.343 9 C 0.516 3.484 10 O -0.549 6.549 11 C -0.275 4.275 12 C -0.041 4.041 13 C -0.185 4.185 14 C 0.131 3.869 15 C -0.432 4.432 16 H 0.088 0.912 17 C 0.072 3.928 18 N -0.761 5.761 19 Si 0.917 3.083 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.258 1.258 23 C -0.239 4.239 24 C -0.016 4.016 25 O 0.130 5.870 26 N -0.341 5.341 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.185 0.815 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.289 0.711 36 H 0.102 0.898 37 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.242 -4.673 -1.491 16.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.150 4.150 3 C -0.170 4.170 4 C -0.167 4.167 5 C 0.313 3.687 6 O -0.263 6.263 7 C -0.048 4.048 8 O -0.261 6.261 9 C 0.369 3.631 10 O -0.443 6.443 11 C -0.278 4.278 12 C -0.060 4.060 13 C -0.204 4.204 14 C 0.128 3.872 15 C -0.459 4.459 16 H 0.106 0.894 17 C -0.151 4.151 18 N -0.384 5.384 19 Si 0.740 3.260 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.258 4.258 24 C -0.035 4.035 25 O 0.054 5.946 26 N -0.042 5.042 27 H 0.102 0.898 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.202 0.798 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.580 -5.440 -1.327 17.500 hybrid contribution 0.283 1.180 -0.027 1.213 sum -16.298 -4.260 -1.353 16.899 Atomic orbital electron populations 1.20224 0.85098 1.04243 1.03821 1.23683 0.99520 0.88255 1.03592 1.23111 0.90132 1.01912 1.01844 1.24618 0.97881 0.84540 1.09634 1.20955 0.86305 0.88380 0.73086 1.90693 1.88025 1.14267 1.33323 1.22933 0.84008 0.92131 1.05701 1.86682 1.14867 1.38619 1.85886 1.21671 0.81771 0.87650 0.72018 1.90714 1.86160 1.16693 1.50743 1.18146 0.88874 0.92050 1.28723 1.20688 0.98206 0.91934 0.95202 1.21018 0.91633 0.99508 1.08255 1.17870 0.93175 0.91424 0.84777 1.19954 0.97857 0.95600 1.32482 0.89398 1.26178 0.96647 0.99783 0.92485 1.69741 1.27593 1.21595 1.19430 0.86152 0.80967 0.79484 0.79394 1.18786 1.19903 1.18176 1.20680 0.96730 0.93489 1.14925 1.20344 0.91013 0.98167 0.93986 1.85045 1.21161 1.21864 1.66480 1.73745 0.89351 1.24433 1.16633 0.89772 0.89598 0.90159 0.79750 0.87311 0.87311 0.87799 0.86004 0.89917 0.88003 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.47 36.00 0.38 -0.03 16 2 C 0.01 0.06 7.31 -82.18 -0.60 -0.54 16 3 C -0.15 -1.38 10.92 -38.83 -0.42 -1.80 16 4 C -0.10 -1.12 7.20 -36.55 -0.26 -1.39 16 5 C 0.44 5.69 7.21 -30.89 -0.22 5.47 16 6 O -0.39 -6.21 17.06 -14.12 -0.24 -6.45 16 7 C 0.03 0.39 5.81 36.01 0.21 0.59 16 8 O -0.34 -6.49 8.98 -47.36 -0.43 -6.92 16 9 C 0.52 11.08 7.89 34.51 0.27 11.36 16 10 O -0.55 -12.22 16.11 -19.27 -0.31 -12.53 16 11 C -0.28 -6.40 5.89 -104.75 -0.62 -7.01 16 12 C -0.04 -0.97 9.54 -39.60 -0.38 -1.35 16 13 C -0.19 -4.59 8.63 -39.28 -0.34 -4.93 16 14 C 0.13 3.29 5.58 -106.80 -0.60 2.69 16 15 C -0.43 -10.47 9.04 -37.75 -0.34 -10.81 16 16 H 0.09 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.64 5.14 -17.31 -0.09 1.55 16 18 N -0.76 -18.00 10.95 55.56 0.61 -17.39 16 19 Si 0.92 16.85 29.60 -169.99 -5.03 11.82 16 20 H -0.26 -4.81 7.11 56.52 0.40 -4.40 16 21 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 22 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 23 C -0.24 -5.63 9.73 -39.27 -0.38 -6.01 16 24 C -0.02 -0.38 9.52 -39.59 -0.38 -0.76 16 25 O 0.13 1.46 11.16 15.28 0.17 1.63 16 26 N -0.34 -3.84 12.04 33.54 0.40 -3.43 16 27 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.19 1.33 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.37 8.14 -51.93 -0.42 0.94 16 32 H 0.11 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.10 2.28 7.59 -52.48 -0.40 1.88 16 34 H 0.12 3.06 6.16 -52.48 -0.32 2.74 16 35 H 0.29 6.13 8.29 -40.82 -0.34 5.79 16 36 H 0.10 2.20 8.06 -52.48 -0.42 1.78 16 37 H 0.10 2.23 7.63 -52.49 -0.40 1.83 16 LS Contribution 341.50 15.07 5.15 5.15 Total: -1.00 -29.04 341.50 -7.08 -36.12 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -3.63 Total: 4.96 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.77 Total: -12.96 kcal Atomic # 7 Polarization: -21.84 SS G_CDS: 1.01 Total: -20.82 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.81 Total: -24.27 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.04 -7.08 -36.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777063412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.359 kcal (2) G-P(sol) polarization free energy of solvation -29.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds