Wall clock time and date at job start Tue Mar 31 2020 10:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41208 * 126.67986 * 2 1 4 4 C 1.37193 * 103.80526 * 180.11826 * 3 2 1 5 5 C 1.46703 * 126.97865 * 179.87601 * 4 3 2 6 6 O 1.21308 * 120.00257 * 359.71348 * 5 4 3 7 7 C 1.50707 * 119.99980 * 179.97438 * 5 4 3 8 8 O 1.45201 * 109.47223 * 179.72735 * 7 5 4 9 9 C 1.34770 * 116.99838 * 180.02562 * 8 7 5 10 10 O 1.21506 * 120.00368 * 359.97438 * 9 8 7 11 11 C 1.47515 * 119.99765 * 179.97438 * 9 8 7 12 12 C 1.40062 * 119.90076 * 359.72183 * 11 9 8 13 13 C 1.36296 * 120.10207 * 179.71896 * 12 11 9 14 14 C 1.40895 * 119.89723 * 0.55643 * 13 12 11 15 15 C 1.41092 * 120.10462 * 179.69986 * 14 13 12 16 16 H 1.08002 * 120.00520 * 204.67308 * 15 14 13 17 17 C 1.40248 * 119.99781 * 24.65937 * 15 14 13 18 18 N 1.30633 * 119.99623 * 17.87913 * 17 15 14 19 19 Si 1.86793 * 120.00162 * 197.86912 * 17 15 14 20 20 H 1.48502 * 109.47099 * 90.00550 * 19 17 15 21 21 H 1.48498 * 109.47437 * 210.00486 * 19 17 15 22 22 H 1.48504 * 109.47385 * 330.00617 * 19 17 15 23 23 C 1.40900 * 119.80430 * 359.72013 * 14 13 12 24 24 C 1.36302 * 119.89391 * 359.97438 * 23 14 13 25 25 O 1.34738 * 106.03813 * 359.61783 * 4 3 2 26 26 N 1.20874 * 111.44847 * 0.25975 * 25 4 3 27 27 H 1.09006 * 109.46860 * 270.30173 * 1 2 3 28 28 H 1.08995 * 109.47191 * 30.29705 * 1 2 3 29 29 H 1.08999 * 109.47258 * 150.30735 * 1 2 3 30 30 H 1.07992 * 128.09549 * 359.97438 * 3 2 1 31 31 H 1.08997 * 109.46653 * 299.72521 * 7 5 4 32 32 H 1.08991 * 109.46869 * 59.72356 * 7 5 4 33 33 H 1.08007 * 119.95135 * 0.02562 * 12 11 9 34 34 H 1.08006 * 120.05606 * 180.27911 * 13 12 11 35 35 H 0.97001 * 119.99861 * 179.97438 * 18 17 15 36 36 H 1.08003 * 120.05697 * 179.97438 * 23 14 13 37 37 H 1.08001 * 119.94928 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3505 1.1325 0.0000 4 6 3.6145 0.5992 -0.0027 5 6 4.8831 1.3359 -0.0065 6 8 4.8800 2.5490 -0.0126 7 6 6.1902 0.5858 -0.0086 8 8 7.2914 1.5321 -0.0187 9 6 8.5381 1.0201 -0.0223 10 8 8.7004 -0.1840 -0.0167 11 6 9.7056 1.9217 -0.0331 12 6 9.5161 3.3094 -0.0454 13 6 10.5919 4.1462 -0.0496 14 6 11.8962 3.6133 -0.0534 15 6 13.0129 4.4755 -0.0642 16 1 13.9578 4.1306 -0.4576 17 6 12.8960 5.7806 0.4358 18 7 11.8958 6.0941 1.2155 19 14 14.1704 7.0704 -0.0130 20 1 13.7486 7.7731 -1.2514 21 1 14.2936 8.0513 1.0951 22 1 15.4822 6.4123 -0.2397 23 6 12.0820 2.2166 -0.0468 24 6 11.0003 1.3874 -0.0363 25 8 3.4542 -0.7386 0.0045 26 7 2.2845 -1.0436 0.0059 27 1 -0.3633 0.0054 1.0277 28 1 -0.3633 0.8873 -0.5184 29 1 -0.3634 -0.8927 -0.5090 30 1 2.0669 2.1745 -0.0004 31 1 6.2536 -0.0360 0.8844 32 1 6.2453 -0.0454 -0.8954 33 1 8.5159 3.7170 -0.0466 34 1 10.4449 5.2162 -0.0546 35 1 11.8151 6.9967 1.5616 36 1 13.0800 1.8037 -0.0501 37 1 11.1418 0.3167 -0.0317 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777063412.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:38 Heat of formation + Delta-G solvation = -57.008139 kcal Electronic energy + Delta-G solvation = -24013.986971 eV Core-core repulsion = 20110.240481 eV Total energy + Delta-G solvation = -3903.746489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.098 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -46.14845 -41.54226 -40.47514 -39.21489 -37.24909 -36.00102 -35.75070 -33.54036 -32.28787 -31.37145 -30.43452 -29.62265 -27.90142 -25.24512 -24.11420 -23.79916 -22.82190 -21.71808 -20.78672 -19.39903 -19.12610 -18.98635 -18.36853 -18.00255 -17.59319 -17.17828 -16.78983 -16.22977 -15.82063 -15.75354 -15.20430 -14.94307 -14.75676 -14.27573 -14.25508 -14.13891 -14.08842 -13.91072 -13.71786 -13.50292 -13.23163 -12.88517 -12.66404 -12.43892 -12.40209 -11.85447 -11.82558 -11.56548 -11.42450 -11.21659 -11.20069 -11.13651 -10.94174 -9.63020 -9.53228 -8.84854 -6.55111 -0.70671 0.22463 0.83989 1.14600 1.24903 1.27800 1.36794 1.41983 1.55114 1.78064 1.86925 2.15226 2.67565 2.71493 2.99556 3.44644 3.62754 3.80628 3.85008 3.99037 4.06794 4.19353 4.30264 4.38081 4.43458 4.65671 4.68537 4.77261 4.93551 4.98525 5.12202 5.16049 5.20462 5.28178 5.56444 5.80381 5.85062 5.92002 5.96937 6.15191 6.49682 6.70346 6.82294 6.90093 6.94812 8.09736 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.029233 B = 0.002280 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.584716 B =12279.849204 C =13149.263019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.013 3.987 3 C -0.135 4.135 4 C -0.116 4.116 5 C 0.458 3.542 6 O -0.428 6.428 7 C 0.017 3.983 8 O -0.352 6.352 9 C 0.524 3.476 10 O -0.559 6.559 11 C -0.291 4.291 12 C -0.040 4.040 13 C -0.204 4.204 14 C 0.104 3.896 15 C -0.456 4.456 16 H 0.095 0.905 17 C 0.034 3.966 18 N -0.791 5.791 19 Si 0.992 3.008 20 H -0.259 1.259 21 H -0.265 1.265 22 H -0.253 1.253 23 C -0.249 4.249 24 C -0.020 4.020 25 O 0.118 5.882 26 N -0.363 5.363 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.083 0.917 30 H 0.207 0.793 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.112 0.888 35 H 0.299 0.701 36 H 0.116 0.884 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.294 -4.366 -1.649 17.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 C -0.156 4.156 4 C -0.180 4.180 5 C 0.332 3.668 6 O -0.300 6.300 7 C -0.057 4.057 8 O -0.269 6.269 9 C 0.376 3.624 10 O -0.454 6.454 11 C -0.294 4.294 12 C -0.059 4.059 13 C -0.223 4.223 14 C 0.100 3.900 15 C -0.482 4.482 16 H 0.113 0.887 17 C -0.187 4.187 18 N -0.413 5.413 19 Si 0.811 3.189 20 H -0.184 1.184 21 H -0.190 1.190 22 H -0.176 1.176 23 C -0.268 4.268 24 C -0.039 4.039 25 O 0.045 5.955 26 N -0.065 5.065 27 H 0.116 0.884 28 H 0.126 0.874 29 H 0.102 0.898 30 H 0.224 0.776 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.134 0.866 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.644 -5.157 -1.480 18.441 hybrid contribution 0.434 1.008 0.050 1.099 sum -17.210 -4.148 -1.430 17.760 Atomic orbital electron populations 1.20443 0.82383 1.05553 1.05120 1.24299 1.01105 0.87387 1.01678 1.23491 0.89344 1.03045 0.99709 1.24251 0.97423 0.84803 1.11475 1.20767 0.86497 0.87802 0.71728 1.90690 1.88428 1.15434 1.35399 1.23362 0.82930 0.91934 1.07448 1.86619 1.14959 1.40020 1.85301 1.21290 0.82353 0.87038 0.71692 1.90697 1.86644 1.16880 1.51154 1.18400 0.90002 0.92339 1.28614 1.20776 0.98283 0.92175 0.94675 1.21011 0.92236 0.99224 1.09862 1.18217 0.93706 0.92435 0.85597 1.20266 0.97980 0.96813 1.33184 0.88726 1.27072 0.98665 1.01251 0.91671 1.69772 1.29081 1.22691 1.19786 0.85033 0.78153 0.76498 0.79176 1.18397 1.18974 1.17597 1.20873 0.97674 0.93164 1.15063 1.20525 0.90973 0.98800 0.93562 1.85036 1.21455 1.21778 1.67270 1.73748 0.89561 1.25490 1.17748 0.88354 0.87376 0.89783 0.77649 0.85676 0.85536 0.86927 0.86980 0.88914 0.86607 0.86564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.47 71.24 0.75 0.15 16 2 C 0.01 0.20 7.31 43.54 0.32 0.52 16 3 C -0.14 -2.23 10.92 22.75 0.25 -1.98 16 4 C -0.12 -2.41 7.20 24.24 0.17 -2.23 16 5 C 0.46 11.55 7.21 27.90 0.20 11.75 16 6 O -0.43 -13.38 17.06 15.68 0.27 -13.11 16 7 C 0.02 0.48 5.81 71.24 0.41 0.89 16 8 O -0.35 -13.24 8.98 -50.42 -0.45 -13.70 16 9 C 0.52 22.40 7.89 70.27 0.55 22.95 16 10 O -0.56 -24.50 16.11 19.82 0.32 -24.18 16 11 C -0.29 -13.64 5.89 -19.95 -0.12 -13.76 16 12 C -0.04 -1.93 9.54 22.26 0.21 -1.71 16 13 C -0.20 -10.41 8.63 22.47 0.19 -10.22 16 14 C 0.10 5.32 5.58 -21.28 -0.12 5.21 16 15 C -0.46 -22.33 9.04 23.46 0.21 -22.11 16 16 H 0.09 4.34 7.91 -2.91 -0.02 4.32 16 17 C 0.03 1.53 5.14 85.36 0.44 1.97 16 18 N -0.79 -37.69 10.95 21.88 0.24 -37.45 16 19 Si 0.99 33.85 29.60 68.60 2.03 35.88 16 20 H -0.26 -8.66 7.11 99.48 0.71 -7.96 16 21 H -0.27 -8.62 7.11 99.48 0.71 -7.91 16 22 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 23 C -0.25 -11.85 9.73 22.47 0.22 -11.63 16 24 C -0.02 -0.93 9.52 22.26 0.21 -0.72 16 25 O 0.12 2.54 11.16 64.87 0.72 3.26 16 26 N -0.36 -7.67 12.04 -48.70 -0.59 -8.26 16 27 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.21 2.41 8.06 -2.91 -0.02 2.38 16 31 H 0.13 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 33 H 0.11 5.05 7.59 -2.91 -0.02 5.03 16 34 H 0.11 5.83 6.16 -2.91 -0.02 5.81 16 35 H 0.30 12.67 8.29 -92.71 -0.77 11.90 16 36 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16 37 H 0.12 4.99 7.63 -2.91 -0.02 4.96 16 Total: -1.00 -62.64 341.50 7.57 -55.07 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: 1.12 Total: 23.39 kcal Atomic # 6 Polarization: -24.83 SS G_CDS: 3.91 Total: -20.92 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: -0.35 Total: -45.70 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: 0.86 Total: -47.72 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Total: -62.64 7.57 -55.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777063412.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.937 kcal (2) G-P(sol) polarization free energy of solvation -62.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds