Wall clock time and date at job start Tue Mar 31 2020 11:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50709 * 119.99733 * 2 1 4 4 N 1.46903 * 109.46863 * 124.75925 * 3 2 1 5 5 C 1.46899 * 110.99636 * 199.67043 * 4 3 2 6 6 C 1.50698 * 109.47142 * 66.04864 * 5 4 3 7 7 H 1.07997 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.37882 * 120.00030 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99790 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 120.00106 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47266 * 89.99605 * 10 8 6 12 12 H 1.48497 * 109.46947 * 209.99630 * 10 8 6 13 13 H 1.48506 * 109.47053 * 329.99897 * 10 8 6 14 14 C 1.46900 * 110.99796 * 75.71899 * 4 3 2 15 15 N 1.46495 * 109.46926 * 199.05122 * 14 4 3 16 16 N 1.37791 * 122.70843 * 264.99440 * 15 14 4 17 17 C 1.28279 * 116.23311 * 180.30402 * 16 15 14 18 18 O 1.35598 * 125.02144 * 179.76843 * 17 16 15 19 19 C 1.42901 * 117.00211 * 179.97438 * 18 17 16 20 20 C 1.53002 * 109.47184 * 179.97438 * 19 18 17 21 21 S 1.75937 * 109.95956 * 359.73154 * 17 16 15 22 22 C 1.33527 * 122.70858 * 84.77873 * 15 14 4 23 23 S 1.71193 * 125.66927 * 359.97438 * 22 15 14 24 24 H 1.08008 * 119.99720 * 180.02562 * 1 2 3 25 25 H 1.07998 * 120.00309 * 359.97438 * 1 2 3 26 26 H 1.07996 * 120.00525 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46768 * 4.76332 * 3 2 1 28 28 H 1.08997 * 109.46970 * 244.75916 * 3 2 1 29 29 H 1.09000 * 109.47288 * 186.04656 * 5 4 3 30 30 H 1.09003 * 109.47050 * 306.04600 * 5 4 3 31 31 H 0.97000 * 119.99836 * 180.02562 * 9 8 6 32 32 H 1.08999 * 109.47223 * 79.05417 * 14 4 3 33 33 H 1.08997 * 109.47116 * 319.05136 * 14 4 3 34 34 H 1.09001 * 109.47352 * 299.99715 * 19 18 17 35 35 H 1.09002 * 109.47010 * 60.00405 * 19 18 17 36 36 H 1.08995 * 109.47082 * 299.99811 * 20 19 18 37 37 H 1.08996 * 109.47006 * 60.00272 * 20 19 18 38 38 H 1.09000 * 109.46801 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9922 1.3345 1.1379 5 6 3.3927 2.7117 1.4552 6 6 2.1954 3.4817 1.9497 7 1 1.2331 2.9967 2.0208 8 6 2.3282 4.8059 2.3105 9 7 3.4999 5.3967 2.2234 10 14 0.8443 5.7602 2.9241 11 1 0.7449 5.6258 4.3997 12 1 0.9952 7.1936 2.5667 13 1 -0.3870 5.2197 2.2939 14 6 4.1668 0.4906 0.8805 15 7 4.8274 0.1733 2.1490 16 7 5.8886 0.9030 2.6388 17 6 6.3767 0.5120 3.7588 18 8 7.4208 1.0946 4.3984 19 6 7.8246 0.5164 5.6413 20 6 9.0082 1.3026 6.2089 21 16 5.4905 -0.8911 4.3431 22 6 4.4470 -0.8440 2.9258 23 16 3.1626 -1.9264 2.5954 24 1 -0.5400 -0.9354 0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8501 -0.9352 0.0004 27 1 1.3581 2.1319 0.0853 28 1 2.6246 1.4008 -0.9295 29 1 4.1605 2.6978 2.2287 30 1 3.7880 3.1906 0.5594 31 1 3.5935 6.3281 2.4776 32 1 4.8621 1.0238 0.2322 33 1 3.8515 -0.4324 0.3941 34 1 6.9934 0.5517 6.3455 35 1 8.1211 -0.5201 5.4806 36 1 9.8393 1.2670 5.5046 37 1 8.7122 2.3393 6.3695 38 1 9.3164 0.8613 7.1567 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793560665.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:25 Heat of formation + Delta-G solvation = 86.482885 kcal Electronic energy + Delta-G solvation = -21965.601609 eV Core-core repulsion = 18678.566931 eV Total energy + Delta-G solvation = -3287.034678 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.60502 -39.28324 -37.03627 -33.48840 -33.09392 -32.12631 -31.29477 -28.16661 -27.06539 -25.29166 -24.07841 -23.62026 -22.04621 -20.85593 -19.85938 -19.19541 -18.35580 -17.10892 -16.94810 -16.45409 -15.97987 -15.54831 -14.79708 -14.63058 -14.24505 -14.05307 -13.92520 -13.18447 -13.15639 -12.86344 -12.53460 -12.30718 -12.20367 -11.98700 -11.66434 -11.59782 -11.40452 -11.20271 -10.83931 -10.73751 -10.51794 -10.37129 -10.23751 -10.03016 -9.65863 -9.31595 -8.84135 -8.51475 -7.70316 -7.58085 -7.35763 -6.09136 -4.11315 0.27181 0.42148 0.78422 1.33121 1.56692 2.22605 2.81890 2.91870 3.28501 3.34574 3.38625 4.35608 4.41861 4.44025 4.57676 4.74058 4.81722 5.18302 5.26194 5.37248 5.38875 5.40854 5.47175 5.64704 5.77221 5.85354 6.04143 6.22205 6.36582 6.45081 7.05002 7.13110 7.19431 7.31575 7.36303 7.65306 7.88852 8.00170 8.34770 8.95797 9.52905 11.01193 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.009919 B = 0.005648 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2822.141928 B = 4956.563602 C = 7038.284565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 C 0.094 3.906 4 N -0.536 5.536 5 C 0.189 3.811 6 C -0.511 4.511 7 H 0.065 0.935 8 C 0.058 3.942 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.288 3.712 15 N -0.304 5.304 16 N -0.244 5.244 17 C 0.258 3.742 18 O -0.257 6.257 19 C 0.046 3.954 20 C -0.149 4.149 21 S 0.066 5.934 22 C 0.243 3.757 23 S -0.450 6.450 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.101 0.899 28 H 0.036 0.964 29 H 0.037 0.963 30 H -0.003 1.003 31 H 0.262 0.738 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.618 -11.334 3.664 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.150 4.150 3 C -0.033 4.033 4 N -0.261 5.261 5 C 0.065 3.935 6 C -0.549 4.549 7 H 0.084 0.916 8 C -0.144 4.144 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C 0.076 3.924 15 N -0.099 5.099 16 N -0.075 5.075 17 C -0.079 4.079 18 O -0.162 6.162 19 C -0.030 4.030 20 C -0.206 4.206 21 S 0.296 5.704 22 C -0.124 4.124 23 S -0.320 6.320 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.126 0.874 27 H 0.119 0.881 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.015 0.985 31 H 0.071 0.929 32 H 0.095 0.905 33 H 0.137 0.863 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.070 -11.762 4.108 15.410 hybrid contribution 0.140 1.768 -0.255 1.792 sum 9.210 -9.993 3.853 14.126 Atomic orbital electron populations 1.23649 0.95952 1.01075 1.02741 1.22984 0.96066 0.98258 0.97731 1.21142 0.95211 0.96772 0.90161 1.61818 1.11829 1.14383 1.38118 1.19919 0.97255 0.80446 0.95915 1.21097 0.95341 0.94890 1.43597 0.91646 1.24973 0.96075 0.97623 0.95721 1.69968 1.22896 1.12222 1.48234 0.86501 0.82883 0.78905 0.79193 1.20678 1.21240 1.19681 1.22509 0.91553 1.00799 0.77563 1.49267 1.21893 1.18713 1.20013 1.74069 1.03950 1.17521 1.11990 1.25938 0.93493 0.94934 0.93544 1.86037 1.41786 1.52296 1.36079 1.23332 0.99438 0.98300 0.81955 1.21776 0.96068 1.01580 1.01198 1.86502 1.28651 1.29505 1.25708 1.28506 0.98373 0.93165 0.92325 1.92754 1.21533 1.37678 1.80084 0.89180 0.88884 0.87376 0.88104 0.94623 0.94462 0.98514 0.92873 0.90475 0.86302 0.90468 0.90663 0.90915 0.90648 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.11 14.32 29.01 0.42 -2.69 16 2 C -0.13 -2.21 9.33 -36.02 -0.34 -2.55 16 3 C 0.09 1.76 5.24 -4.97 -0.03 1.74 16 4 N -0.54 -11.30 4.52 -241.43 -1.09 -12.39 16 5 C 0.19 4.82 4.60 -4.98 -0.02 4.79 16 6 C -0.51 -14.19 8.23 -34.44 -0.28 -14.48 16 7 H 0.07 1.83 7.31 -52.49 -0.38 1.44 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 9 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 10 Si 0.90 21.71 29.54 -169.99 -5.02 16.69 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 14 C 0.29 5.17 5.32 -63.32 -0.34 4.83 16 15 N -0.30 -5.55 3.39 -63.91 -0.22 -5.77 16 16 N -0.24 -4.48 10.88 29.94 0.33 -4.16 16 17 C 0.26 3.97 8.50 51.28 0.44 4.41 16 18 O -0.26 -3.44 10.20 -18.49 -0.19 -3.63 16 19 C 0.05 0.39 5.91 37.16 0.22 0.61 16 20 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16 21 S 0.07 0.91 22.12 -107.50 -2.38 -1.47 16 22 C 0.24 4.28 7.53 53.50 0.40 4.69 16 23 S -0.45 -8.47 29.99 -107.50 -3.22 -11.69 16 24 H 0.09 1.28 8.06 -52.48 -0.42 0.85 16 25 H 0.09 1.48 7.84 -52.49 -0.41 1.07 16 26 H 0.11 1.77 7.28 -52.49 -0.38 1.38 16 27 H 0.10 2.09 6.23 -51.93 -0.32 1.77 16 28 H 0.04 0.60 8.00 -51.93 -0.42 0.19 16 29 H 0.04 1.04 6.98 -51.93 -0.36 0.68 16 30 H 0.00 -0.08 8.12 -51.93 -0.42 -0.50 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.98 16 32 H 0.08 1.32 8.01 -51.93 -0.42 0.90 16 33 H 0.12 1.91 6.13 -51.93 -0.32 1.60 16 34 H 0.08 0.60 8.04 -51.93 -0.42 0.19 16 35 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 352.75 15.07 5.32 5.32 Total: -1.00 -32.49 352.75 -10.08 -42.58 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -5.10 Total: -2.18 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 0.75 Total: 2.31 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -0.25 Total: -47.92 kcal Atomic # 8 Polarization: -3.44 SS G_CDS: -0.19 Total: -3.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Atomic # 16 Polarization: -7.56 SS G_CDS: -5.60 Total: -13.17 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.49 -10.08 -42.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793560665.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.061 kcal (2) G-P(sol) polarization free energy of solvation -32.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds