Wall clock time and date at job start Tue Mar 31 2020 11:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00249 * 2 1 4 4 N 1.46894 * 109.47051 * 123.77638 * 3 2 1 5 5 C 1.46898 * 111.00290 * 302.02514 * 4 3 2 6 6 C 1.50698 * 109.47510 * 288.15129 * 5 4 3 7 7 H 1.07992 * 119.99921 * 359.27518 * 6 5 4 8 8 C 1.37878 * 119.99858 * 179.26985 * 6 5 4 9 9 N 1.31506 * 120.00348 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99647 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47293 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46867 * 120.00521 * 10 8 6 13 13 H 1.48501 * 109.47249 * 240.00274 * 10 8 6 14 14 C 1.46898 * 111.00306 * 65.98643 * 4 3 2 15 15 N 1.46496 * 109.47120 * 66.04001 * 14 4 3 16 16 N 1.40273 * 126.63296 * 90.03126 * 15 14 4 17 17 C 1.29201 * 107.89013 * 180.02562 * 16 15 14 18 18 C 1.50697 * 125.34917 * 179.97438 * 17 16 15 19 19 S 1.81398 * 109.47414 * 89.99828 * 18 17 16 20 20 C 1.81397 * 103.00248 * 180.02562 * 19 18 17 21 21 O 1.34774 * 109.30365 * 0.23670 * 17 16 15 22 22 C 1.34409 * 108.83226 * 359.60343 * 21 17 16 23 23 S 1.71205 * 126.37820 * 180.18348 * 22 21 17 24 24 H 1.07998 * 120.00008 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00157 * 180.02562 * 1 2 3 26 26 H 1.08008 * 120.00214 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46704 * 3.77556 * 3 2 1 28 28 H 1.09001 * 109.46962 * 243.77742 * 3 2 1 29 29 H 1.09001 * 109.46750 * 48.15103 * 5 4 3 30 30 H 1.09004 * 109.47589 * 168.14818 * 5 4 3 31 31 H 0.97001 * 120.00275 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46891 * 306.04100 * 14 4 3 33 33 H 1.09000 * 109.47323 * 186.04427 * 14 4 3 34 34 H 1.09000 * 109.47099 * 329.99683 * 18 17 16 35 35 H 1.09007 * 109.47361 * 209.99566 * 18 17 16 36 36 H 1.09009 * 109.47072 * 299.99826 * 20 19 18 37 37 H 1.09001 * 109.47648 * 59.99550 * 20 19 18 38 38 H 1.08997 * 109.47226 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9752 1.3441 1.1512 5 6 2.2389 1.1802 2.4117 6 6 1.4482 2.4307 2.6979 7 1 1.4978 3.2684 2.0182 8 6 0.6614 2.5054 3.8277 9 7 0.6013 1.4855 4.6558 10 14 -0.3181 4.0558 4.1829 11 1 -0.0795 5.0498 3.1058 12 1 -1.7647 3.7253 4.2393 13 1 0.1108 4.6247 5.4859 14 6 4.0301 0.3301 1.0220 15 7 4.8908 0.6630 -0.1157 16 7 6.0469 1.4570 -0.0865 17 6 6.5204 1.5129 -1.2873 18 6 7.7587 2.2649 -1.7021 19 16 9.2032 1.1769 -1.5595 20 6 10.5711 2.2428 -2.0918 21 8 5.7298 0.7977 -2.1118 22 6 4.7246 0.2655 -1.3955 23 16 3.4649 -0.7268 -1.9950 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9354 0.0004 27 1 1.3571 2.1325 0.0677 28 1 2.6385 1.3927 -0.9219 29 1 1.5594 0.3320 2.3278 30 1 2.9437 1.0021 3.2238 31 1 0.0480 1.5382 5.4508 32 1 3.5763 -0.6477 0.8603 33 1 4.6262 0.3076 1.9343 34 1 7.8914 3.1316 -1.0546 35 1 7.6539 2.5959 -2.7354 36 1 10.3960 2.5747 -3.1152 37 1 10.6332 3.1099 -1.4343 38 1 11.5059 1.6841 -2.0463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793571826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:47 Heat of formation + Delta-G solvation = 101.374834 kcal Electronic energy + Delta-G solvation = -21836.511729 eV Core-core repulsion = 18550.122814 eV Total energy + Delta-G solvation = -3286.388914 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.82124 -38.13386 -35.98640 -34.16528 -32.84481 -31.98196 -30.10194 -29.24011 -27.65056 -26.87358 -24.76915 -23.25960 -22.83948 -21.15589 -19.35088 -18.36138 -17.92835 -17.41898 -16.84544 -16.27143 -15.83253 -15.30941 -15.12807 -14.91874 -14.58021 -14.45448 -14.29931 -13.94861 -13.52533 -13.16008 -12.64895 -12.49339 -12.37529 -12.23661 -11.87414 -11.62168 -11.41850 -11.19161 -11.03407 -10.73943 -10.70576 -10.56790 -10.46339 -10.05912 -9.42884 -8.61106 -8.47157 -8.28432 -7.95071 -7.68719 -7.51618 -6.09617 -4.10801 0.36346 0.65819 0.96899 1.48614 1.83331 1.89550 2.48096 3.09006 3.27463 3.35288 3.39605 3.46849 4.19097 4.35414 4.39408 4.57307 4.60858 4.62161 4.75982 4.93757 5.18759 5.26928 5.33060 5.41931 5.65048 5.86941 5.89879 6.11322 6.54455 6.63462 6.86638 6.98013 7.17257 7.38341 7.50407 7.62621 7.83123 7.99405 8.32655 8.94549 9.52995 11.01052 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.003608 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.560740 B = 7758.694886 C = 8973.695716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.158 4.158 3 C 0.086 3.914 4 N -0.539 5.539 5 C 0.197 3.803 6 C -0.503 4.503 7 H 0.063 0.937 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.898 3.102 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 C 0.292 3.708 15 N -0.358 5.358 16 N -0.230 5.230 17 C 0.236 3.764 18 C -0.008 4.008 19 S -0.214 6.214 20 C -0.125 4.125 21 O -0.212 6.212 22 C 0.409 3.591 23 S -0.458 6.458 24 H 0.092 0.908 25 H 0.085 0.915 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.094 0.906 33 H 0.117 0.883 34 H 0.135 0.865 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.473 1.041 -12.706 21.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.178 4.178 3 C -0.042 4.042 4 N -0.264 5.264 5 C 0.073 3.927 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.210 1.210 14 C 0.084 3.916 15 N -0.160 5.160 16 N -0.058 5.058 17 C 0.006 3.994 18 C -0.157 4.157 19 S 0.009 5.991 20 C -0.294 4.294 21 O -0.102 6.102 22 C 0.112 3.888 23 S -0.327 6.327 24 H 0.111 0.889 25 H 0.103 0.897 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.077 0.923 29 H 0.034 0.966 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.135 0.865 34 H 0.153 0.847 35 H 0.144 0.856 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.958 0.049 -11.660 20.579 hybrid contribution -0.450 1.632 -0.435 1.748 sum 16.508 1.682 -12.094 20.533 Atomic orbital electron populations 1.23594 0.95979 1.00851 1.02096 1.23408 0.96412 0.99407 0.98553 1.21402 0.94882 0.95652 0.92217 1.62432 1.13234 1.44609 1.06080 1.19816 0.92225 0.98134 0.82518 1.21019 1.25689 1.00015 1.07476 0.91922 1.24928 0.96800 0.96552 0.96016 1.69945 1.40166 1.30260 1.13098 0.86444 0.79709 0.83112 0.78191 1.19726 1.21013 1.21005 1.22633 0.89180 0.95655 0.84114 1.51007 1.19378 1.36912 1.08699 1.77428 0.98698 1.11489 1.18190 1.25767 0.94584 0.94546 0.84504 1.21808 0.87615 0.98605 1.07669 1.87484 1.00835 1.21679 1.89078 1.23511 0.98776 1.02501 1.04584 1.85427 1.32452 1.54188 1.38140 1.27558 0.88466 0.89478 0.83323 1.93585 1.20090 1.38241 1.80790 0.88939 0.89659 0.87242 0.89655 0.92297 0.96608 0.95158 0.92859 0.88816 0.86498 0.84742 0.85568 0.89791 0.89690 0.87223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.55 14.32 29.01 0.42 -3.13 16 2 C -0.16 -3.06 5.76 -36.02 -0.21 -3.26 16 3 C 0.09 1.73 5.15 -4.98 -0.03 1.70 16 4 N -0.54 -11.13 4.80 -241.44 -1.16 -12.29 16 5 C 0.20 4.79 4.57 -4.98 -0.02 4.77 16 6 C -0.50 -13.56 8.61 -34.44 -0.30 -13.86 16 7 H 0.06 1.71 7.51 -52.49 -0.39 1.32 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -25.66 13.29 55.43 0.74 -24.92 16 10 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 14 C 0.29 5.10 5.87 -63.32 -0.37 4.73 16 15 N -0.36 -5.84 3.60 -65.08 -0.23 -6.07 16 16 N -0.23 -3.35 12.55 32.46 0.41 -2.94 16 17 C 0.24 2.82 7.62 -13.39 -0.10 2.72 16 18 C -0.01 -0.05 6.57 36.00 0.24 0.18 16 19 S -0.21 -1.67 22.36 -107.50 -2.40 -4.08 16 20 C -0.12 -0.46 10.76 101.05 1.09 0.63 16 21 O -0.21 -3.01 10.72 4.12 0.04 -2.97 16 22 C 0.41 6.72 7.14 54.17 0.39 7.11 16 23 S -0.46 -8.30 25.83 -107.50 -2.78 -11.08 16 24 H 0.09 1.77 7.84 -52.49 -0.41 1.36 16 25 H 0.09 1.48 8.06 -52.49 -0.42 1.06 16 26 H 0.11 2.10 5.66 -52.48 -0.30 1.80 16 27 H 0.09 1.84 6.99 -51.93 -0.36 1.48 16 28 H 0.06 1.15 5.13 -51.93 -0.27 0.89 16 29 H 0.02 0.42 6.64 -51.93 -0.34 0.07 16 30 H 0.03 0.77 7.81 -51.93 -0.41 0.37 16 31 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 32 H 0.09 1.61 6.02 -51.93 -0.31 1.30 16 33 H 0.12 1.92 7.86 -51.93 -0.41 1.51 16 34 H 0.13 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.13 0.58 8.14 -51.92 -0.42 0.15 16 36 H 0.08 0.21 8.14 -51.92 -0.42 -0.22 16 37 H 0.08 0.23 8.14 -51.92 -0.42 -0.19 16 38 H 0.11 0.33 8.14 -51.93 -0.42 -0.10 16 LS Contribution 344.35 15.07 5.19 5.19 Total: -1.00 -31.42 344.35 -9.09 -40.51 By element: Atomic # 1 Polarization: 4.19 SS G_CDS: -4.87 Total: -0.68 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 1.00 Total: 3.09 kcal Atomic # 7 Polarization: -45.98 SS G_CDS: -0.25 Total: -46.23 kcal Atomic # 8 Polarization: -3.01 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -9.98 SS G_CDS: -5.18 Total: -15.16 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.42 -9.09 -40.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793571826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.888 kcal (2) G-P(sol) polarization free energy of solvation -31.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds