Wall clock time and date at job start Tue Mar 31 2020 11:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00249 * 2 1 4 4 N 1.46894 * 109.47051 * 123.77638 * 3 2 1 5 5 C 1.46898 * 111.00290 * 302.02514 * 4 3 2 6 6 C 1.50698 * 109.47510 * 288.15129 * 5 4 3 7 7 H 1.07992 * 119.99921 * 359.27518 * 6 5 4 8 8 C 1.37878 * 119.99858 * 179.26985 * 6 5 4 9 9 N 1.31506 * 120.00348 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 119.99647 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.47293 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.46867 * 120.00521 * 10 8 6 13 13 H 1.48501 * 109.47249 * 240.00274 * 10 8 6 14 14 C 1.46898 * 111.00306 * 65.98643 * 4 3 2 15 15 N 1.46496 * 109.47120 * 66.04001 * 14 4 3 16 16 N 1.40273 * 126.63296 * 90.03126 * 15 14 4 17 17 C 1.29201 * 107.89013 * 180.02562 * 16 15 14 18 18 C 1.50697 * 125.34917 * 179.97438 * 17 16 15 19 19 S 1.81398 * 109.47414 * 89.99828 * 18 17 16 20 20 C 1.81397 * 103.00248 * 180.02562 * 19 18 17 21 21 O 1.34774 * 109.30365 * 0.23670 * 17 16 15 22 22 C 1.34409 * 108.83226 * 359.60343 * 21 17 16 23 23 S 1.71205 * 126.37820 * 180.18348 * 22 21 17 24 24 H 1.07998 * 120.00008 * 359.97438 * 1 2 3 25 25 H 1.07998 * 120.00157 * 180.02562 * 1 2 3 26 26 H 1.08008 * 120.00214 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.46704 * 3.77556 * 3 2 1 28 28 H 1.09001 * 109.46962 * 243.77742 * 3 2 1 29 29 H 1.09001 * 109.46750 * 48.15103 * 5 4 3 30 30 H 1.09004 * 109.47589 * 168.14818 * 5 4 3 31 31 H 0.97001 * 120.00275 * 179.97438 * 9 8 6 32 32 H 1.09003 * 109.46891 * 306.04100 * 14 4 3 33 33 H 1.09000 * 109.47323 * 186.04427 * 14 4 3 34 34 H 1.09000 * 109.47099 * 329.99683 * 18 17 16 35 35 H 1.09007 * 109.47361 * 209.99566 * 18 17 16 36 36 H 1.09009 * 109.47072 * 299.99826 * 20 19 18 37 37 H 1.09001 * 109.47648 * 59.99550 * 20 19 18 38 38 H 1.08997 * 109.47226 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9752 1.3441 1.1512 5 6 2.2389 1.1802 2.4117 6 6 1.4482 2.4307 2.6979 7 1 1.4978 3.2684 2.0182 8 6 0.6614 2.5054 3.8277 9 7 0.6013 1.4855 4.6558 10 14 -0.3181 4.0558 4.1829 11 1 -0.0795 5.0498 3.1058 12 1 -1.7647 3.7253 4.2393 13 1 0.1108 4.6247 5.4859 14 6 4.0301 0.3301 1.0220 15 7 4.8908 0.6630 -0.1157 16 7 6.0469 1.4570 -0.0865 17 6 6.5204 1.5129 -1.2873 18 6 7.7587 2.2649 -1.7021 19 16 9.2032 1.1769 -1.5595 20 6 10.5711 2.2428 -2.0918 21 8 5.7298 0.7977 -2.1118 22 6 4.7246 0.2655 -1.3955 23 16 3.4649 -0.7268 -1.9950 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8501 -0.9354 0.0004 27 1 1.3571 2.1325 0.0677 28 1 2.6385 1.3927 -0.9219 29 1 1.5594 0.3320 2.3278 30 1 2.9437 1.0021 3.2238 31 1 0.0480 1.5382 5.4508 32 1 3.5763 -0.6477 0.8603 33 1 4.6262 0.3076 1.9343 34 1 7.8914 3.1316 -1.0546 35 1 7.6539 2.5959 -2.7354 36 1 10.3960 2.5747 -3.1152 37 1 10.6332 3.1099 -1.4343 38 1 11.5059 1.6841 -2.0463 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793571826.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:47 Heat of formation + Delta-G solvation = 79.209469 kcal Electronic energy + Delta-G solvation = -21837.472891 eV Core-core repulsion = 18550.122814 eV Total energy + Delta-G solvation = -3287.350077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.02907 -39.68441 -37.33609 -35.29982 -34.78756 -33.57305 -31.03904 -29.76054 -29.16535 -28.49558 -26.36763 -24.84562 -23.91497 -22.89116 -20.86167 -19.70489 -19.09766 -18.70957 -18.23156 -17.68450 -17.03478 -16.86564 -16.59388 -16.12890 -15.97045 -15.59295 -15.11196 -14.90194 -14.39104 -14.09749 -13.92431 -13.88859 -13.64575 -13.46504 -13.38935 -13.06688 -12.98676 -12.85498 -12.64054 -12.46277 -12.20530 -12.13560 -12.04781 -11.41683 -11.13398 -10.60279 -10.14177 -9.38444 -9.29666 -8.99221 -8.85038 -8.19076 -6.26928 -0.69319 -0.42577 -0.31619 0.53239 0.86445 1.25354 1.40621 1.42592 1.47226 1.53745 1.54815 2.39619 2.42508 3.06853 3.15044 3.17046 3.68627 3.73545 3.99054 4.03025 4.08551 4.27569 4.30776 4.40380 4.41670 4.45289 4.56199 4.89906 4.96900 5.03452 5.13897 5.23791 5.59858 5.70088 5.81823 5.91549 5.94501 6.16806 6.36749 6.84255 7.40940 8.91441 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016223 B = 0.003608 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.560740 B = 7758.694886 C = 8973.695716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.161 4.161 3 C 0.097 3.903 4 N -0.545 5.545 5 C 0.214 3.786 6 C -0.515 4.515 7 H 0.055 0.945 8 C 0.012 3.988 9 N -0.927 5.927 10 Si 0.960 3.040 11 H -0.268 1.268 12 H -0.281 1.281 13 H -0.278 1.278 14 C 0.299 3.701 15 N -0.360 5.360 16 N -0.256 5.256 17 C 0.258 3.742 18 C -0.001 4.001 19 S -0.277 6.277 20 C -0.107 4.107 21 O -0.208 6.208 22 C 0.417 3.583 23 S -0.503 6.503 24 H 0.088 0.912 25 H 0.102 0.898 26 H 0.112 0.888 27 H 0.066 0.934 28 H 0.064 0.936 29 H -0.002 1.002 30 H 0.016 0.984 31 H 0.264 0.736 32 H 0.097 0.903 33 H 0.127 0.873 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.015 2.607 -13.589 23.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.181 4.181 3 C -0.031 4.031 4 N -0.269 5.269 5 C 0.089 3.911 6 C -0.553 4.553 7 H 0.073 0.927 8 C -0.187 4.187 9 N -0.567 5.567 10 Si 0.786 3.214 11 H -0.193 1.193 12 H -0.206 1.206 13 H -0.204 1.204 14 C 0.090 3.910 15 N -0.161 5.161 16 N -0.084 5.084 17 C 0.029 3.971 18 C -0.149 4.149 19 S -0.054 6.054 20 C -0.275 4.275 21 O -0.098 6.098 22 C 0.117 3.883 23 S -0.373 6.373 24 H 0.106 0.894 25 H 0.120 0.880 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.015 0.985 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.114 0.886 33 H 0.144 0.856 34 H 0.176 0.824 35 H 0.176 0.824 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 18.544 1.632 -12.561 22.457 hybrid contribution -0.702 1.197 -0.236 1.408 sum 17.842 2.829 -12.797 22.138 Atomic orbital electron populations 1.23746 0.95994 1.01495 1.01541 1.23373 0.96584 0.99141 0.99041 1.21248 0.94522 0.95298 0.92037 1.62274 1.13501 1.46233 1.04912 1.19410 0.91507 0.96452 0.83693 1.21265 1.26072 1.00600 1.07391 0.92668 1.25693 0.97763 0.99397 0.95871 1.70044 1.41016 1.32053 1.13591 0.85470 0.78240 0.79620 0.78107 1.19259 1.20644 1.20405 1.22510 0.88578 0.94882 0.84990 1.50777 1.19872 1.37183 1.08227 1.77493 0.98495 1.12815 1.19588 1.26866 0.94521 0.92356 0.83362 1.22171 0.84704 0.97999 1.10072 1.87756 1.03430 1.24384 1.89820 1.23597 0.96381 1.01820 1.05696 1.85435 1.32104 1.54121 1.38100 1.27252 0.88518 0.89163 0.83353 1.93641 1.22011 1.40304 1.81308 0.89393 0.87952 0.86980 0.91605 0.91755 0.98461 0.96644 0.92679 0.88582 0.85553 0.82369 0.82359 0.88046 0.88307 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.22 14.32 67.78 0.97 -6.25 16 2 C -0.16 -6.32 5.76 25.65 0.15 -6.17 16 3 C 0.10 3.91 5.15 85.56 0.44 4.35 16 4 N -0.54 -22.71 4.80 -917.76 -4.40 -27.11 16 5 C 0.21 10.63 4.57 85.56 0.39 11.02 16 6 C -0.51 -27.99 8.61 25.60 0.22 -27.77 16 7 H 0.06 3.03 7.51 -2.91 -0.02 3.01 16 8 C 0.01 0.63 5.46 84.66 0.46 1.10 16 9 N -0.93 -53.47 13.29 21.45 0.28 -53.18 16 10 Si 0.96 43.50 29.54 68.60 2.03 45.53 16 11 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 13 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 14 C 0.30 10.45 5.87 170.81 1.00 11.46 16 15 N -0.36 -11.57 3.60 -471.90 -1.70 -13.26 16 16 N -0.26 -7.15 12.55 -166.07 -2.08 -9.23 16 17 C 0.26 5.65 7.62 88.49 0.67 6.32 16 18 C 0.00 -0.01 6.57 71.24 0.47 0.46 16 19 S -0.28 -3.73 22.36 -56.49 -1.26 -4.99 16 20 C -0.11 -0.43 10.76 113.37 1.22 0.79 16 21 O -0.21 -5.61 10.72 -8.18 -0.09 -5.70 16 22 C 0.42 13.46 7.14 129.75 0.93 14.39 16 23 S -0.50 -18.29 25.83 -56.49 -1.46 -19.75 16 24 H 0.09 3.40 7.84 -2.91 -0.02 3.38 16 25 H 0.10 3.50 8.06 -2.91 -0.02 3.48 16 26 H 0.11 4.35 5.66 -2.91 -0.02 4.33 16 27 H 0.07 2.90 6.99 -2.39 -0.02 2.88 16 28 H 0.06 2.53 5.13 -2.39 -0.01 2.52 16 29 H 0.00 -0.13 6.64 -2.39 -0.02 -0.14 16 30 H 0.02 0.81 7.81 -2.39 -0.02 0.79 16 31 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 32 H 0.10 3.33 6.02 -2.39 -0.01 3.32 16 33 H 0.13 4.15 7.86 -2.39 -0.02 4.13 16 34 H 0.16 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.16 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 37 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 38 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 Total: -1.00 -68.10 344.35 -0.69 -68.78 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: 1.07 Total: 9.21 kcal Atomic # 6 Polarization: 2.78 SS G_CDS: 6.92 Total: 9.70 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -7.90 Total: -102.78 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -0.09 Total: -5.70 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -22.02 SS G_CDS: -2.72 Total: -24.74 kcal Total: -68.10 -0.69 -68.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793571826.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.993 kcal (2) G-P(sol) polarization free energy of solvation -68.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds