Wall clock time and date at job start Tue Mar 31 2020 10:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47160 * 2 1 4 4 C 1.50697 * 109.47502 * 120.00247 * 2 1 3 5 5 O 1.33648 * 125.80034 * 299.97738 * 4 2 1 6 6 C 1.34222 * 110.90963 * 180.02562 * 5 4 2 7 7 C 1.34179 * 109.12131 * 359.97438 * 6 5 4 8 8 C 1.36423 * 125.80158 * 120.34724 * 4 2 1 9 9 C 1.47375 * 127.19268 * 359.97438 * 8 4 2 10 10 O 1.21614 * 120.00379 * 0.16941 * 9 8 4 11 11 N 1.34771 * 119.99946 * 180.17268 * 9 8 4 12 12 S 1.65602 * 120.00094 * 179.97438 * 11 9 8 13 13 O 1.42104 * 104.27698 * 181.07014 * 12 11 9 14 14 O 1.42100 * 104.27878 * 308.92887 * 12 11 9 15 15 C 1.81402 * 104.44831 * 65.00085 * 12 11 9 16 16 C 1.52994 * 109.47267 * 180.02562 * 15 12 11 17 17 C 1.50701 * 109.47257 * 180.02562 * 16 15 12 18 18 H 1.08000 * 120.00313 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99849 * 179.97438 * 17 16 15 20 20 N 1.31508 * 120.00417 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99817 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.46764 * 90.00122 * 21 19 17 23 23 H 1.48500 * 109.47349 * 209.99932 * 21 19 17 24 24 H 1.48499 * 109.47014 * 330.00553 * 21 19 17 25 25 H 1.09004 * 109.47315 * 59.99799 * 1 2 3 26 26 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47190 * 300.00020 * 1 2 3 28 28 H 1.09006 * 109.46877 * 240.00570 * 2 1 3 29 29 H 1.09001 * 109.47334 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47628 * 300.00013 * 3 2 1 31 31 H 1.08997 * 109.47281 * 60.00665 * 3 2 1 32 32 H 1.08003 * 125.43772 * 179.97438 * 6 5 4 33 33 H 1.08002 * 127.01820 * 179.97438 * 7 6 5 34 34 H 0.97003 * 120.00464 * 359.97438 * 11 9 8 35 35 H 1.09000 * 109.47142 * 300.00222 * 15 12 11 36 36 H 1.09005 * 109.47319 * 59.99709 * 15 12 11 37 37 H 1.09000 * 109.47163 * 299.99552 * 16 15 12 38 38 H 1.08997 * 109.47481 * 59.99877 * 16 15 12 39 39 H 0.97003 * 120.00459 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 1.7824 -0.3561 2.4946 6 6 2.3778 -1.1973 3.3545 7 6 3.0410 -2.1364 2.6626 8 6 2.8255 -1.8204 1.2431 9 6 3.3526 -2.5520 0.0774 10 8 3.0900 -2.1732 -1.0480 11 7 4.1258 -3.6409 0.2586 12 16 4.7176 -4.4634 -1.0512 13 8 5.4499 -5.5422 -0.4859 14 8 3.5751 -4.6991 -1.8626 15 6 5.8384 -3.2861 -1.8563 16 6 6.4558 -3.9359 -3.0962 17 6 7.3874 -2.9580 -3.7648 18 1 7.5250 -1.9715 -3.3474 19 6 8.0640 -3.3227 -4.9094 20 7 7.8961 -4.5238 -5.4181 21 14 9.2182 -2.1103 -5.7385 22 1 10.5849 -2.2662 -5.1790 23 1 9.2482 -2.3751 -7.1994 24 1 8.7391 -0.7258 -5.4961 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 2.3306 -1.1292 4.4313 33 1 3.6198 -2.9541 3.0662 34 1 4.3356 -3.9429 1.1562 35 1 5.2807 -2.3974 -2.1519 36 1 6.6295 -3.0040 -1.1614 37 1 7.0135 -4.8246 -2.8011 38 1 5.6646 -4.2176 -3.7910 39 1 8.3724 -4.7805 -6.2232 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000796813015.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:29 Heat of formation + Delta-G solvation = -113.523385 kcal Electronic energy + Delta-G solvation = -24361.174980 eV Core-core repulsion = 20590.421757 eV Total energy + Delta-G solvation = -3770.753223 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.94851 -39.78429 -36.69244 -35.83633 -35.59498 -34.47204 -33.88393 -32.95420 -31.17217 -29.46034 -27.41861 -25.63690 -24.67288 -22.81292 -21.73739 -21.31514 -20.27175 -19.10998 -18.31575 -17.56756 -16.58623 -16.47032 -16.37370 -15.69247 -15.37667 -15.06049 -14.91914 -14.70241 -14.54136 -14.21004 -13.44015 -13.37420 -13.36557 -13.07209 -12.53428 -12.44271 -12.34292 -11.79503 -11.71540 -11.61024 -11.54718 -11.48728 -11.24714 -11.07260 -10.98871 -10.85192 -10.41960 -10.35287 -10.20611 -10.15846 -9.69948 -9.17202 -8.93492 -8.48765 -6.10989 -4.16365 0.50779 0.99083 1.68555 2.45869 2.75178 2.94093 3.27815 3.33963 3.37343 4.00929 4.09207 4.24899 4.38541 4.44710 4.65594 4.69326 4.82786 4.88819 5.04071 5.12336 5.24382 5.33327 5.37865 5.53959 5.55645 5.61981 5.65153 5.74310 5.84164 5.91172 5.97197 6.06807 6.47075 6.58009 6.80469 7.29749 7.36409 7.49798 7.82108 8.18017 8.86565 9.48112 11.00144 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.003695 C = 0.003285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.435548 B = 7575.251769 C = 8522.791747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.147 4.147 4 C 0.104 3.896 5 O -0.170 6.170 6 C -0.038 4.038 7 C -0.185 4.185 8 C -0.254 4.254 9 C 0.614 3.386 10 O -0.493 6.493 11 N -1.052 6.052 12 S 2.567 3.433 13 O -0.954 6.954 14 O -0.937 6.937 15 C -0.575 4.575 16 C 0.029 3.971 17 C -0.519 4.519 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.901 3.099 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.272 1.272 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.135 0.865 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.210 0.790 33 H 0.160 0.840 34 H 0.427 0.573 35 H 0.132 0.868 36 H 0.121 0.879 37 H 0.034 0.966 38 H 0.037 0.963 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.507 9.385 18.878 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.060 4.060 3 C -0.204 4.204 4 C 0.050 3.950 5 O -0.066 6.066 6 C -0.104 4.104 7 C -0.204 4.204 8 C -0.260 4.260 9 C 0.403 3.597 10 O -0.367 6.367 11 N -0.812 5.812 12 S 2.667 3.333 13 O -0.945 6.945 14 O -0.927 6.927 15 C -0.710 4.710 16 C -0.010 4.010 17 C -0.558 4.558 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.728 3.272 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.197 1.197 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.077 0.923 28 H 0.152 0.848 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.226 0.774 33 H 0.178 0.822 34 H 0.262 0.738 35 H 0.150 0.850 36 H 0.140 0.860 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.115 8.879 17.817 23.839 hybrid contribution 1.268 0.660 0.331 1.467 sum -11.847 9.540 18.148 23.679 Atomic orbital electron populations 1.21847 0.93073 1.02731 1.02693 1.20447 0.96980 0.96727 0.91826 1.21853 1.01838 0.93985 1.02703 1.22976 0.94331 0.93487 0.84205 1.83772 1.59554 1.48163 1.15073 1.23883 0.99230 0.91642 0.95609 1.22876 1.04312 1.02147 0.91060 1.21035 1.09639 1.01587 0.93730 1.17053 0.75974 0.78457 0.88239 1.90917 1.56304 1.65580 1.23911 1.55249 1.58937 1.39338 1.27687 1.06700 0.76472 0.76326 0.73811 1.93590 1.73912 1.50246 1.76719 1.93597 1.48135 1.83763 1.67172 1.30340 1.13225 1.15369 1.12017 1.18996 0.96781 0.96712 0.88500 1.20977 1.25338 0.99538 1.09966 0.91961 1.25058 0.96934 0.95514 0.96926 1.69951 1.42226 1.18786 1.21893 0.86452 0.80877 0.81212 0.78648 1.20480 1.20981 1.19714 0.91052 0.92040 0.92251 0.84775 0.91950 0.91035 0.92254 0.77380 0.82201 0.73794 0.84969 0.86034 0.94761 0.94519 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.18 37.15 0.34 -0.93 16 2 C -0.04 -0.44 3.25 -91.78 -0.30 -0.74 16 3 C -0.15 -1.29 9.18 37.16 0.34 -0.95 16 4 C 0.10 1.16 5.88 -34.96 -0.21 0.96 16 5 O -0.17 -1.62 10.52 7.65 0.08 -1.54 16 6 C -0.04 -0.28 12.03 29.30 0.35 0.08 16 7 C -0.18 -1.59 10.60 -37.45 -0.40 -1.98 16 8 C -0.25 -3.05 6.31 -103.28 -0.65 -3.70 16 9 C 0.61 9.09 7.55 -12.54 -0.09 9.00 16 10 O -0.49 -8.71 12.60 -11.86 -0.15 -8.86 16 11 N -1.05 -14.57 5.60 30.42 0.17 -14.40 16 12 S 2.57 47.87 5.11 -107.50 -0.55 47.33 16 13 O -0.95 -19.22 18.08 -57.54 -1.04 -20.26 16 14 O -0.94 -20.81 17.04 -64.79 -1.10 -21.92 16 15 C -0.57 -11.58 5.82 37.15 0.22 -11.36 16 16 C 0.03 0.76 4.98 -27.89 -0.14 0.63 16 17 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 18 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 21 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.13 1.70 5.52 -51.93 -0.29 1.42 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.21 0.63 8.06 -52.48 -0.42 0.20 16 33 H 0.16 0.93 7.74 -52.49 -0.41 0.52 16 34 H 0.43 4.22 7.96 -34.47 -0.27 3.95 16 35 H 0.13 2.60 7.19 -51.92 -0.37 2.23 16 36 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 37 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 348.23 15.07 5.25 5.25 Total: -1.00 -36.78 348.23 -7.68 -44.46 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.11 Total: 1.78 kcal Atomic # 6 Polarization: -21.36 SS G_CDS: -0.95 Total: -22.31 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.91 Total: -40.31 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -2.21 Total: -52.58 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 47.87 SS G_CDS: -0.55 Total: 47.33 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -36.78 -7.68 -44.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000796813015.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.060 kcal (2) G-P(sol) polarization free energy of solvation -36.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds