Wall clock time and date at job start Tue Mar 31 2020 10:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.34330 * 126.44286 * 2 1 4 4 N 1.34484 * 107.66836 * 179.73187 * 3 2 1 5 5 C 1.30250 * 108.70027 * 0.27078 * 4 3 2 6 6 C 1.50702 * 125.62048 * 179.97438 * 5 4 3 7 7 O 1.42901 * 109.46887 * 90.02204 * 6 5 4 8 8 C 1.42910 * 113.99486 * 180.02562 * 7 6 5 9 9 C 1.50704 * 109.46871 * 179.97438 * 8 7 6 10 10 O 1.20832 * 119.99829 * 359.97438 * 9 8 7 11 11 O 1.34222 * 120.00008 * 179.97438 * 9 8 7 12 12 C 1.45198 * 117.00054 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47324 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.47382 * 180.02562 * 13 12 11 15 15 S 1.80996 * 109.47048 * 180.02562 * 14 13 12 16 16 C 1.76208 * 99.99788 * 180.02562 * 15 14 13 17 17 H 1.07990 * 119.99950 * 0.02562 * 16 15 14 18 18 C 1.38800 * 119.99686 * 179.97438 * 16 15 14 19 19 N 1.31636 * 119.99685 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00179 * 359.97438 * 18 16 15 21 21 H 1.48501 * 109.46964 * 90.00289 * 20 18 16 22 22 H 1.48499 * 109.47100 * 209.99979 * 20 18 16 23 23 H 1.48494 * 109.47339 * 329.99784 * 20 18 16 24 24 O 1.33972 * 108.76227 * 359.97438 * 5 4 3 25 25 H 1.09006 * 109.46964 * 89.99849 * 1 2 3 26 26 H 1.09001 * 109.47520 * 209.99424 * 1 2 3 27 27 H 1.09003 * 109.47512 * 329.99686 * 1 2 3 28 28 H 1.08002 * 126.16884 * 0.02562 * 3 2 1 29 29 H 1.09007 * 109.47129 * 210.02172 * 6 5 4 30 30 H 1.08997 * 109.46764 * 330.01876 * 6 5 4 31 31 H 1.08993 * 109.46934 * 299.99659 * 8 7 6 32 32 H 1.08996 * 109.47040 * 60.00164 * 8 7 6 33 33 H 1.09001 * 109.47358 * 300.00141 * 12 11 9 34 34 H 1.08999 * 109.47139 * 60.00535 * 12 11 9 35 35 H 1.08997 * 109.47519 * 300.00676 * 13 12 11 36 36 H 1.09008 * 109.46637 * 60.00432 * 13 12 11 37 37 H 1.09001 * 109.47261 * 300.00235 * 14 13 12 38 38 H 1.08998 * 109.47114 * 60.00049 * 14 13 12 39 39 H 0.96997 * 119.99499 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3049 1.0806 0.0000 4 7 3.5782 0.6478 0.0060 5 6 3.5765 -0.6547 0.0038 6 6 4.8004 -1.5340 0.0082 7 8 5.1804 -1.8146 1.3569 8 6 6.3372 -2.6456 1.4739 9 6 6.6457 -2.8747 2.9311 10 8 5.9470 -2.3771 3.7821 11 8 7.6966 -3.6316 3.2836 12 6 7.9341 -3.8088 4.7050 13 6 9.1646 -4.6948 4.9099 14 6 9.4145 -4.8821 6.4077 15 16 10.8705 -5.9296 6.6500 16 6 10.9232 -5.9775 8.4107 17 1 10.1802 -5.4475 8.9877 18 6 11.9193 -6.6975 9.0557 19 7 11.9584 -6.7337 10.3710 20 14 13.2034 -7.6162 8.0575 21 1 14.3613 -6.7231 7.7989 22 1 13.6583 -8.8098 8.8148 23 1 12.6114 -8.0460 6.7652 24 8 2.3074 -1.0840 -0.0031 25 1 -0.3633 0.0000 -1.0277 26 1 -0.3634 -0.8900 0.5137 27 1 -0.3634 0.8900 0.5139 28 1 1.9821 2.1113 0.0004 29 1 4.5788 -2.4678 -0.5087 30 1 5.6173 -1.0221 -0.5005 31 1 6.1478 -3.6023 0.9874 32 1 7.1857 -2.1564 0.9957 33 1 8.1042 -2.8373 5.1689 34 1 7.0655 -4.2827 5.1622 35 1 8.9942 -5.6664 4.4461 36 1 10.0335 -4.2213 4.4527 37 1 9.5848 -3.9107 6.8719 38 1 8.5456 -5.3557 6.8646 39 1 12.6547 -7.2366 10.8218 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805569836.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:48 Heat of formation + Delta-G solvation = -141.650448 kcal Electronic energy + Delta-G solvation = -21884.538871 eV Core-core repulsion = 18112.565967 eV Total energy + Delta-G solvation = -3771.972904 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.41785 -41.60834 -39.21599 -37.72605 -35.86638 -34.96624 -34.68679 -33.75281 -31.01200 -29.19700 -28.05319 -27.26306 -26.11218 -23.41314 -22.89475 -22.33892 -22.15205 -19.66234 -19.07344 -18.38532 -18.15811 -18.06382 -17.57785 -17.11531 -17.00308 -16.89765 -16.19609 -15.93090 -15.60714 -15.28134 -14.94461 -14.49404 -14.24699 -14.17443 -14.00293 -13.88825 -13.39850 -13.34338 -13.24880 -13.06438 -13.03713 -12.62394 -12.47748 -12.42110 -12.25773 -11.81086 -11.67135 -11.55318 -11.50809 -11.16631 -10.98304 -10.61350 -9.79352 -9.00763 -8.52265 -6.24720 0.18474 0.98302 1.06608 1.19130 1.33582 1.47867 1.56330 1.61426 1.79678 2.24929 2.64707 2.74841 2.85899 3.24650 3.53485 3.75856 3.82118 3.93929 3.98582 4.05923 4.09949 4.16321 4.20486 4.23595 4.28200 4.47184 4.48302 4.61281 4.64766 4.65427 4.97480 4.98867 5.07390 5.12817 5.24256 5.36801 5.68832 5.72632 6.09804 6.60534 6.63954 6.91133 8.60869 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.048107 B = 0.001571 C = 0.001545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.893114 B =17817.146500 C =18117.739988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.038 4.038 3 C -0.068 4.068 4 N -0.490 5.490 5 C 0.164 3.836 6 C 0.163 3.837 7 O -0.402 6.402 8 C 0.078 3.922 9 C 0.457 3.543 10 O -0.537 6.537 11 O -0.347 6.347 12 C 0.079 3.921 13 C -0.086 4.086 14 C -0.077 4.077 15 S -0.202 6.202 16 C -0.529 4.529 17 H 0.049 0.951 18 C 0.038 3.962 19 N -0.923 5.923 20 Si 0.927 3.073 21 H -0.260 1.260 22 H -0.263 1.263 23 H -0.226 1.226 24 O -0.209 6.209 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.114 0.886 28 H 0.209 0.791 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.140 0.860 32 H 0.137 0.863 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 11.108 -29.732 37.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.091 4.091 3 C -0.206 4.206 4 N -0.221 5.221 5 C -0.042 4.042 6 C 0.087 3.913 7 O -0.321 6.321 8 C 0.002 3.998 9 C 0.301 3.699 10 O -0.426 6.426 11 O -0.263 6.263 12 C 0.003 3.997 13 C -0.124 4.124 14 C -0.225 4.225 15 S 0.026 5.974 16 C -0.676 4.676 17 H 0.068 0.932 18 C -0.167 4.167 19 N -0.560 5.560 20 Si 0.748 3.252 21 H -0.185 1.185 22 H -0.188 1.188 23 H -0.149 1.149 24 O -0.096 6.096 25 H 0.123 0.877 26 H 0.101 0.899 27 H 0.133 0.867 28 H 0.226 0.774 29 H 0.138 0.862 30 H 0.142 0.858 31 H 0.158 0.842 32 H 0.155 0.845 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.650 11.043 -29.857 36.894 hybrid contribution -0.866 0.067 1.795 1.994 sum -19.516 11.110 -28.062 35.941 Atomic orbital electron populations 1.20559 0.80728 1.05803 1.05465 1.24417 0.96830 0.83821 1.04057 1.23627 0.87079 1.02054 1.07840 1.70387 1.24870 1.09996 1.16874 1.26172 0.84774 0.90231 1.02998 1.20843 0.88810 0.98102 0.83582 1.87947 1.46585 1.70606 1.26994 1.21984 0.90632 0.99165 0.87995 1.24036 0.77581 0.74835 0.93465 1.90717 1.49728 1.48043 1.54094 1.86404 1.46373 1.64356 1.29201 1.23039 0.98704 1.00691 0.77239 1.21148 0.97126 1.01092 0.93083 1.22991 0.98831 1.01373 0.99320 1.83751 1.38982 1.66743 1.07909 1.22374 1.17551 1.37444 0.90263 0.93243 1.25814 0.99183 0.95963 0.95758 1.70048 1.35058 1.41742 1.09184 0.85688 0.79524 0.79189 0.80785 1.18501 1.18788 1.14880 1.84395 1.18090 1.37581 1.69560 0.87665 0.89885 0.86714 0.77420 0.86192 0.85784 0.84235 0.84511 0.91101 0.91020 0.89206 0.89247 0.91223 0.91137 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.38 10.43 71.23 0.74 0.37 16 2 C -0.04 -0.58 7.39 24.79 0.18 -0.39 16 3 C -0.07 -1.15 11.80 83.39 0.98 -0.17 16 4 N -0.49 -10.95 11.29 -303.82 -3.43 -14.38 16 5 C 0.16 3.23 7.97 88.34 0.70 3.93 16 6 C 0.16 1.91 6.56 71.24 0.47 2.37 16 7 O -0.40 -7.58 9.86 -129.90 -1.28 -8.86 16 8 C 0.08 0.95 6.53 71.24 0.47 1.42 16 9 C 0.46 10.53 8.03 71.24 0.57 11.10 16 10 O -0.54 -17.63 16.25 28.38 0.46 -17.17 16 11 O -0.35 -7.86 10.22 -51.34 -0.52 -8.39 16 12 C 0.08 2.03 5.47 71.98 0.39 2.42 16 13 C -0.09 -2.38 5.60 30.59 0.17 -2.21 16 14 C -0.08 -2.84 5.67 71.98 0.41 -2.43 16 15 S -0.20 -9.46 19.41 -56.49 -1.10 -10.56 16 16 C -0.53 -31.09 10.04 67.95 0.68 -30.41 16 17 H 0.05 3.18 8.03 -2.92 -0.02 3.16 16 18 C 0.04 2.20 5.50 84.86 0.47 2.67 16 19 N -0.92 -56.82 13.97 21.65 0.30 -56.51 16 20 Si 0.93 43.44 27.74 68.60 1.90 45.35 16 21 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.23 -10.05 6.74 99.48 0.67 -9.38 16 24 O -0.21 -4.09 10.78 -3.76 -0.04 -4.13 16 25 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 26 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.11 0.17 8.14 -2.39 -0.02 0.16 16 28 H 0.21 2.15 8.06 -2.91 -0.02 2.13 16 29 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.14 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.14 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 34 H 0.07 1.89 8.13 -2.39 -0.02 1.87 16 35 H 0.09 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.09 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.07 2.64 8.14 -2.40 -0.02 2.62 16 39 H 0.28 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -83.84 361.69 3.55 -80.29 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: 1.01 Total: 5.70 kcal Atomic # 6 Polarization: -17.57 SS G_CDS: 6.24 Total: -11.33 kcal Atomic # 7 Polarization: -67.77 SS G_CDS: -3.13 Total: -70.89 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -1.38 Total: -38.56 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.35 kcal Atomic # 16 Polarization: -9.46 SS G_CDS: -1.10 Total: -10.56 kcal Total: -83.84 3.55 -80.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805569836.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.363 kcal (2) G-P(sol) polarization free energy of solvation -83.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds