Wall clock time and date at job start Tue Mar 31 2020 10:33:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.32567 * 121.64507 * 2 1
4 4 S 1.77222 * 105.32135 * 180.19177 * 3 2 1
5 5 C 1.72213 * 94.84880 * 359.76191 * 4 3 2
6 6 O 1.21827 * 127.05723 * 180.02562 * 5 4 3
7 7 N 1.34248 * 105.88176 * 0.02562 * 5 4 3
8 8 C 1.46496 * 121.37743 * 179.97438 * 7 5 4
9 9 C 1.52998 * 109.47238 * 90.02432 * 8 7 5
10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7
11 11 O 1.20830 * 119.99594 * 359.97438 * 10 9 8
12 12 O 1.34222 * 120.00024 * 179.72254 * 10 9 8
13 13 C 1.45201 * 116.99867 * 180.02562 * 12 10 9
14 14 C 1.52998 * 109.47142 * 180.02562 * 13 12 10
15 15 O 1.42893 * 109.47686 * 64.99657 * 14 13 12
16 16 C 1.42895 * 114.00408 * 179.97438 * 15 14 13
17 17 C 1.50697 * 109.47479 * 180.02562 * 16 15 14
18 18 H 1.08005 * 119.99936 * 0.02562 * 17 16 15
19 19 C 1.37875 * 120.00358 * 180.02562 * 17 16 15
20 20 N 1.31518 * 120.00395 * 179.97438 * 19 17 16
21 21 Si 1.86805 * 119.99846 * 0.02562 * 19 17 16
22 22 H 1.48502 * 109.47027 * 90.00037 * 21 19 17
23 23 H 1.48496 * 109.46864 * 209.99710 * 21 19 17
24 24 H 1.48499 * 109.47107 * 329.99781 * 21 19 17
25 25 H 1.08994 * 109.47317 * 270.24099 * 1 2 3
26 26 H 1.08994 * 109.47222 * 30.25326 * 1 2 3
27 27 H 1.09008 * 109.46764 * 150.24446 * 1 2 3
28 28 H 1.08002 * 127.34156 * 359.92730 * 3 2 1
29 29 H 1.09000 * 109.47435 * 330.02336 * 8 7 5
30 30 H 1.09002 * 109.46784 * 210.01972 * 8 7 5
31 31 H 1.09001 * 109.47671 * 59.99927 * 9 8 7
32 32 H 1.08998 * 109.47454 * 299.99925 * 9 8 7
33 33 H 1.09009 * 109.46864 * 300.00062 * 13 12 10
34 34 H 1.09001 * 109.47271 * 60.00074 * 13 12 10
35 35 H 1.09008 * 109.47089 * 185.00120 * 14 13 12
36 36 H 1.09000 * 109.47064 * 304.99700 * 14 13 12
37 37 H 1.08995 * 109.47592 * 300.00427 * 16 15 14
38 38 H 1.09002 * 109.47189 * 60.00528 * 16 15 14
39 39 H 0.96996 * 120.00137 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2025 1.1286 0.0000
4 16 3.9033 0.6305 -0.0057
5 6 3.5607 -1.0572 -0.0006
6 8 4.3675 -1.9701 -0.0013
7 7 2.2222 -1.1604 0.0045
8 6 1.5578 -2.4660 0.0093
9 6 1.3312 -2.9176 1.4535
10 6 0.6471 -4.2605 1.4585
11 8 0.3690 -4.8006 0.4140
12 8 0.3515 -4.8587 2.6231
13 6 -0.3068 -6.1510 2.5519
14 6 -0.5620 -6.6720 3.9676
15 8 -1.4893 -5.8115 4.6320
16 6 -1.7984 -6.2113 5.9686
17 6 -2.7800 -5.2387 6.5697
18 1 -3.1330 -4.3993 5.9888
19 6 -3.2276 -5.4202 7.8610
20 7 -4.0839 -4.5711 8.3858
21 14 -2.6166 -6.8716 8.8659
22 1 -1.3928 -6.4786 9.6096
23 1 -3.6691 -7.2854 9.8283
24 1 -2.3023 -8.0045 7.9587
25 1 -0.3633 0.0043 1.0276
26 1 -0.3633 0.8876 -0.5177
27 1 -0.3633 -0.8922 -0.5101
28 1 1.8152 2.1368 -0.0011
29 1 2.1845 -3.1946 -0.5051
30 1 0.5982 -2.3872 -0.5015
31 1 0.7045 -2.1891 1.9679
32 1 2.2908 -2.9964 1.9644
33 1 -1.2563 -6.0466 2.0268
34 1 0.3300 -6.8540 2.0149
35 1 -0.9747 -7.6796 3.9150
36 1 0.3763 -6.6921 4.5219
37 1 -2.2369 -7.2091 5.9572
38 1 -0.8859 -6.2222 6.5648
39 1 -4.3985 -4.6986 9.2944
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000815174045.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:33:49
Heat of formation + Delta-G solvation = -134.864594 kcal
Electronic energy + Delta-G solvation = -23181.974332 eV
Core-core repulsion = 19410.295685 eV
Total energy + Delta-G solvation = -3771.678647 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-41.48699 -40.42341 -37.93198 -37.37201 -36.29957 -33.90165 -32.75033 -31.75612
-30.43443 -28.69724 -27.62304 -25.57046 -23.75728 -22.49419 -21.92668 -21.11903
-20.53199 -18.43086 -18.16199 -17.24361 -16.97128 -16.92027 -16.65803 -15.98510
-15.71078 -15.30944 -14.94804 -14.74380 -14.50563 -14.14213 -14.09045 -14.00629
-13.48559 -13.26385 -13.04437 -12.68471 -12.55692 -12.42506 -11.82809 -11.79210
-11.67587 -11.48866 -11.23978 -10.94791 -10.75449 -10.61417 -10.58424 -10.37828
-9.97338 -9.92301 -9.26592 -8.96981 -8.56442 -8.31552 -6.17227 -4.16852
0.60190 1.01450 1.43011 1.76061 2.06140 2.22263 2.73667 3.20673
3.27899 3.28293 4.07222 4.22858 4.28744 4.30109 4.40055 4.60023
4.68088 4.88421 4.94330 5.05428 5.07410 5.10639 5.14009 5.19223
5.25304 5.29280 5.50784 5.61918 5.71093 5.73536 5.88048 6.34007
6.40841 6.50061 6.91008 6.94620 7.51779 7.62398 7.89104 8.57439
8.93232 9.41451 10.95711
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.018017 B = 0.002378 C = 0.002253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1553.732823 B =11770.840443 C =12423.233866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C 0.104 3.896
3 C -0.238 4.238
4 S 0.002 5.998
5 C 0.479 3.521
6 O -0.470 6.470
7 N -0.532 5.532
8 C 0.113 3.887
9 C -0.133 4.133
10 C 0.471 3.529
11 O -0.516 6.516
12 O -0.338 6.338
13 C 0.074 3.926
14 C 0.057 3.943
15 O -0.376 6.376
16 C 0.168 3.832
17 C -0.521 4.521
18 H 0.082 0.918
19 C 0.073 3.927
20 N -0.894 5.894
21 Si 0.876 3.124
22 H -0.273 1.273
23 H -0.282 1.282
24 H -0.266 1.266
25 H 0.091 0.909
26 H 0.092 0.908
27 H 0.079 0.921
28 H 0.193 0.807
29 H 0.106 0.894
30 H 0.107 0.893
31 H 0.116 0.884
32 H 0.113 0.887
33 H 0.080 0.920
34 H 0.081 0.919
35 H 0.065 0.935
36 H 0.052 0.948
37 H 0.004 0.996
38 H 0.001 0.999
39 H 0.267 0.733
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.170 9.181 -18.919 24.297
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C -0.007 4.007
3 C -0.376 4.376
4 S 0.245 5.755
5 C 0.161 3.839
6 O -0.350 6.350
7 N -0.254 5.254
8 C -0.012 4.012
9 C -0.172 4.172
10 C 0.314 3.686
11 O -0.405 6.405
12 O -0.253 6.253
13 C 0.001 3.999
14 C -0.021 4.021
15 O -0.295 6.295
16 C 0.093 3.907
17 C -0.558 4.558
18 H 0.101 0.899
19 C -0.129 4.129
20 N -0.533 5.533
21 Si 0.703 3.297
22 H -0.199 1.199
23 H -0.207 1.207
24 H -0.191 1.191
25 H 0.110 0.890
26 H 0.111 0.889
27 H 0.098 0.902
28 H 0.210 0.790
29 H 0.124 0.876
30 H 0.125 0.875
31 H 0.134 0.866
32 H 0.131 0.869
33 H 0.098 0.902
34 H 0.099 0.901
35 H 0.083 0.917
36 H 0.070 0.930
37 H 0.022 0.978
38 H 0.019 0.981
39 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges 13.575 9.261 -19.122 25.213
hybrid contribution -0.885 -1.784 0.819 2.153
sum 12.690 7.477 -18.303 23.494
Atomic orbital electron populations
1.20879 0.86300 1.04752 1.04641 1.19516 0.96028 0.84766 1.00377
1.24927 0.93067 1.01400 1.18168 1.85217 1.08572 1.00915 1.80805
1.21664 0.83692 0.95870 0.82671 1.90989 1.48571 1.42444 1.52973
1.46096 1.06416 1.07653 1.65195 1.21661 1.00411 0.82852 0.96302
1.21652 1.03529 0.93049 0.98971 1.23145 0.76132 0.87211 0.82156
1.90671 1.51071 1.65553 1.33255 1.86593 1.70297 1.35196 1.33260
1.23229 0.97361 0.81162 0.98147 1.22409 0.94452 0.93918 0.91327
1.87963 1.61667 1.50587 1.29317 1.20639 0.95169 0.96038 0.78833
1.20861 1.24614 1.11623 0.98742 0.89947 1.24767 0.94700 0.96357
0.97110 1.69868 1.31544 1.36325 1.15523 0.86845 0.79068 0.83263
0.80538 1.19856 1.20716 1.19115 0.89023 0.88903 0.90216 0.78977
0.87577 0.87464 0.86619 0.86921 0.90152 0.90129 0.91672 0.92980
0.97801 0.98148 0.92285
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -0.46 9.70 36.01 0.35 -0.11 16
2 C 0.10 0.70 6.59 -82.51 -0.54 0.16 16
3 C -0.24 -1.47 11.24 28.83 0.32 -1.15 16
4 S 0.00 0.02 22.97 -107.50 -2.47 -2.45 16
5 C 0.48 5.40 8.27 53.82 0.45 5.85 16
6 O -0.47 -6.82 17.55 5.08 0.09 -6.73 16
7 N -0.53 -4.79 2.60 -117.28 -0.31 -5.09 16
8 C 0.11 1.00 4.56 -4.04 -0.02 0.98 16
9 C -0.13 -1.30 6.14 -27.88 -0.17 -1.47 16
10 C 0.47 6.14 7.96 36.01 0.29 6.43 16
11 O -0.52 -7.49 15.73 -18.75 -0.30 -7.78 16
12 O -0.34 -5.19 10.19 -42.00 -0.43 -5.62 16
13 C 0.07 1.08 5.84 37.16 0.22 1.30 16
14 C 0.06 0.94 6.33 37.16 0.24 1.18 16
15 O -0.38 -8.54 10.30 -38.80 -0.40 -8.94 16
16 C 0.17 4.18 4.76 36.00 0.17 4.35 16
17 C -0.52 -15.25 9.99 -34.44 -0.34 -15.59 16
18 H 0.08 2.64 8.06 -52.48 -0.42 2.22 16
19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16
20 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16
21 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16
22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16
23 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16
24 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16
25 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16
26 H 0.09 0.23 8.10 -51.93 -0.42 -0.19 16
27 H 0.08 0.34 6.18 -51.92 -0.32 0.02 16
28 H 0.19 0.64 8.06 -52.49 -0.42 0.22 16
29 H 0.11 1.08 7.76 -51.93 -0.40 0.67 16
30 H 0.11 0.79 6.07 -51.93 -0.32 0.47 16
31 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16
32 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16
33 H 0.08 1.18 8.14 -51.92 -0.42 0.76 16
34 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16
35 H 0.07 0.95 8.14 -51.92 -0.42 0.52 16
36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16
37 H 0.00 0.10 7.20 -51.93 -0.37 -0.27 16
38 H 0.00 0.02 7.57 -51.93 -0.39 -0.37 16
39 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16
LS Contribution 352.66 15.07 5.31 5.31
Total: -1.00 -35.29 352.66 -6.73 -42.02
By element:
Atomic # 1 Polarization: 0.64 SS G_CDS: -5.20 Total: -4.56 kcal
Atomic # 6 Polarization: 3.07 SS G_CDS: 0.85 Total: 3.93 kcal
Atomic # 7 Polarization: -31.99 SS G_CDS: 0.47 Total: -31.52 kcal
Atomic # 8 Polarization: -28.04 SS G_CDS: -1.03 Total: -29.07 kcal
Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal
Atomic # 16 Polarization: 0.02 SS G_CDS: -2.47 Total: -2.45 kcal
Total LS contribution 5.31 Total: 5.31 kcal
Total: -35.29 -6.73 -42.02 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815174045.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -92.847 kcal
(2) G-P(sol) polarization free energy of solvation -35.286 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.018 kcal
(6) G-S(sol) free energy of system = (1) + (5) -134.865 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds