Wall clock time and date at job start Tue Mar 31 2020 10:33:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50700 * 1
3 3 C 1.32567 * 121.64507 * 2 1
4 4 S 1.77222 * 105.32135 * 180.19177 * 3 2 1
5 5 C 1.72213 * 94.84880 * 359.76191 * 4 3 2
6 6 O 1.21827 * 127.05723 * 180.02562 * 5 4 3
7 7 N 1.34248 * 105.88176 * 0.02562 * 5 4 3
8 8 C 1.46496 * 121.37743 * 179.97438 * 7 5 4
9 9 C 1.52998 * 109.47238 * 90.02432 * 8 7 5
10 10 C 1.50706 * 109.47348 * 179.97438 * 9 8 7
11 11 O 1.20830 * 119.99594 * 359.97438 * 10 9 8
12 12 O 1.34222 * 120.00024 * 179.72254 * 10 9 8
13 13 C 1.45201 * 116.99867 * 180.02562 * 12 10 9
14 14 C 1.52998 * 109.47142 * 180.02562 * 13 12 10
15 15 O 1.42893 * 109.47686 * 64.99657 * 14 13 12
16 16 C 1.42895 * 114.00408 * 179.97438 * 15 14 13
17 17 C 1.50697 * 109.47479 * 180.02562 * 16 15 14
18 18 H 1.08005 * 119.99936 * 0.02562 * 17 16 15
19 19 C 1.37875 * 120.00358 * 180.02562 * 17 16 15
20 20 N 1.31518 * 120.00395 * 179.97438 * 19 17 16
21 21 Si 1.86805 * 119.99846 * 0.02562 * 19 17 16
22 22 H 1.48502 * 109.47027 * 90.00037 * 21 19 17
23 23 H 1.48496 * 109.46864 * 209.99710 * 21 19 17
24 24 H 1.48499 * 109.47107 * 329.99781 * 21 19 17
25 25 H 1.08994 * 109.47317 * 270.24099 * 1 2 3
26 26 H 1.08994 * 109.47222 * 30.25326 * 1 2 3
27 27 H 1.09008 * 109.46764 * 150.24446 * 1 2 3
28 28 H 1.08002 * 127.34156 * 359.92730 * 3 2 1
29 29 H 1.09000 * 109.47435 * 330.02336 * 8 7 5
30 30 H 1.09002 * 109.46784 * 210.01972 * 8 7 5
31 31 H 1.09001 * 109.47671 * 59.99927 * 9 8 7
32 32 H 1.08998 * 109.47454 * 299.99925 * 9 8 7
33 33 H 1.09009 * 109.46864 * 300.00062 * 13 12 10
34 34 H 1.09001 * 109.47271 * 60.00074 * 13 12 10
35 35 H 1.09008 * 109.47089 * 185.00120 * 14 13 12
36 36 H 1.09000 * 109.47064 * 304.99700 * 14 13 12
37 37 H 1.08995 * 109.47592 * 300.00427 * 16 15 14
38 38 H 1.09002 * 109.47189 * 60.00528 * 16 15 14
39 39 H 0.96996 * 120.00137 * 180.02562 * 20 19 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2025 1.1286 0.0000
4 16 3.9033 0.6305 -0.0057
5 6 3.5607 -1.0572 -0.0006
6 8 4.3675 -1.9701 -0.0013
7 7 2.2222 -1.1604 0.0045
8 6 1.5578 -2.4660 0.0093
9 6 1.3312 -2.9176 1.4535
10 6 0.6471 -4.2605 1.4585
11 8 0.3690 -4.8006 0.4140
12 8 0.3515 -4.8587 2.6231
13 6 -0.3068 -6.1510 2.5519
14 6 -0.5620 -6.6720 3.9676
15 8 -1.4893 -5.8115 4.6320
16 6 -1.7984 -6.2113 5.9686
17 6 -2.7800 -5.2387 6.5697
18 1 -3.1330 -4.3993 5.9888
19 6 -3.2276 -5.4202 7.8610
20 7 -4.0839 -4.5711 8.3858
21 14 -2.6166 -6.8716 8.8659
22 1 -1.3928 -6.4786 9.6096
23 1 -3.6691 -7.2854 9.8283
24 1 -2.3023 -8.0045 7.9587
25 1 -0.3633 0.0043 1.0276
26 1 -0.3633 0.8876 -0.5177
27 1 -0.3633 -0.8922 -0.5101
28 1 1.8152 2.1368 -0.0011
29 1 2.1845 -3.1946 -0.5051
30 1 0.5982 -2.3872 -0.5015
31 1 0.7045 -2.1891 1.9679
32 1 2.2908 -2.9964 1.9644
33 1 -1.2563 -6.0466 2.0268
34 1 0.3300 -6.8540 2.0149
35 1 -0.9747 -7.6796 3.9150
36 1 0.3763 -6.6921 4.5219
37 1 -2.2369 -7.2091 5.9572
38 1 -0.8859 -6.2222 6.5648
39 1 -4.3985 -4.6986 9.2944
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000815174045.mol2 39
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:33:48
Heat of formation + Delta-G solvation = -158.639253 kcal
Electronic energy + Delta-G solvation = -23183.005279 eV
Core-core repulsion = 19410.295685 eV
Total energy + Delta-G solvation = -3772.709594 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.102 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-42.24603 -41.46952 -38.89937 -38.72008 -37.59270 -34.90132 -34.64357 -32.46293
-31.78003 -29.75440 -29.11894 -26.32750 -24.57477 -24.03673 -23.55968 -22.09369
-21.29802 -19.17646 -19.11200 -19.04866 -18.12658 -18.03697 -17.59556 -17.22665
-16.98375 -16.50710 -16.25094 -16.10241 -15.52596 -15.08714 -14.87417 -14.67803
-14.57483 -14.48888 -14.22751 -13.97989 -13.65758 -13.38728 -13.16895 -13.01148
-12.66132 -12.50186 -12.36534 -12.31079 -12.08610 -11.87951 -11.75150 -11.72714
-11.36407 -11.22631 -10.93979 -10.67312 -10.42322 -8.98854 -8.37590 -6.45809
-0.15028 0.35521 0.82638 1.02071 1.04470 1.34508 1.37225 1.41568
1.47795 1.87674 2.29373 2.93068 2.95372 3.37122 3.49576 3.58828
3.75381 3.89788 4.09433 4.11365 4.20087 4.32812 4.37665 4.47609
4.49574 4.56814 4.61160 4.69005 4.75064 4.76539 4.97820 4.98828
5.27929 5.33828 5.42172 5.69456 5.90276 6.18052 6.55332 6.58243
6.69512 7.18400 8.79428
Molecular weight = 315.10amu
Principal moments of inertia in cm(-1)
A = 0.018017 B = 0.002378 C = 0.002253
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1553.732823 B =11770.840443 C =12423.233866
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C 0.090 3.910
3 C -0.220 4.220
4 S 0.002 5.998
5 C 0.461 3.539
6 O -0.519 6.519
7 N -0.529 5.529
8 C 0.117 3.883
9 C -0.125 4.125
10 C 0.472 3.528
11 O -0.532 6.532
12 O -0.359 6.359
13 C 0.074 3.926
14 C 0.049 3.951
15 O -0.405 6.405
16 C 0.178 3.822
17 C -0.547 4.547
18 H 0.030 0.970
19 C 0.013 3.987
20 N -0.942 5.942
21 Si 0.955 3.045
22 H -0.261 1.261
23 H -0.274 1.274
24 H -0.242 1.242
25 H 0.094 0.906
26 H 0.116 0.884
27 H 0.079 0.921
28 H 0.228 0.772
29 H 0.089 0.911
30 H 0.125 0.875
31 H 0.132 0.868
32 H 0.110 0.890
33 H 0.074 0.926
34 H 0.110 0.890
35 H 0.092 0.908
36 H 0.064 0.936
37 H 0.018 0.982
38 H 0.013 0.987
39 H 0.273 0.727
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 12.484 8.693 -18.872 24.240
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.019 4.019
3 C -0.357 4.357
4 S 0.246 5.754
5 C 0.144 3.856
6 O -0.403 6.403
7 N -0.250 5.250
8 C -0.008 4.008
9 C -0.163 4.163
10 C 0.316 3.684
11 O -0.422 6.422
12 O -0.275 6.275
13 C 0.001 3.999
14 C -0.028 4.028
15 O -0.325 6.325
16 C 0.102 3.898
17 C -0.585 4.585
18 H 0.049 0.951
19 C -0.185 4.185
20 N -0.581 5.581
21 Si 0.776 3.224
22 H -0.185 1.185
23 H -0.200 1.200
24 H -0.165 1.165
25 H 0.113 0.887
26 H 0.135 0.865
27 H 0.098 0.902
28 H 0.244 0.756
29 H 0.108 0.892
30 H 0.143 0.857
31 H 0.150 0.850
32 H 0.128 0.872
33 H 0.093 0.907
34 H 0.128 0.872
35 H 0.110 0.890
36 H 0.082 0.918
37 H 0.036 0.964
38 H 0.031 0.969
39 H 0.082 0.918
Dipole moment (debyes) X Y Z Total
from point charges 13.871 8.807 -19.106 25.200
hybrid contribution -1.027 -1.471 0.706 1.928
sum 12.844 7.336 -18.401 23.609
Atomic orbital electron populations
1.20989 0.84209 1.05963 1.05194 1.19977 0.97217 0.84004 1.00715
1.25443 0.90870 1.02717 1.16696 1.85218 1.10994 0.99068 1.80161
1.22030 0.84170 0.96460 0.82902 1.90949 1.49890 1.44123 1.55300
1.46126 1.05933 1.08406 1.64530 1.21604 1.00815 0.82732 0.95668
1.21664 1.03233 0.91634 0.99757 1.23632 0.75618 0.87785 0.81340
1.90658 1.51834 1.66140 1.33564 1.86587 1.70594 1.35755 1.34540
1.23276 0.97839 0.81724 0.97088 1.22765 0.93810 0.94402 0.91820
1.87905 1.63462 1.52672 1.28476 1.20365 0.94388 0.94967 0.80049
1.21158 1.26378 1.11603 0.99322 0.95128 1.25844 0.94469 0.99925
0.98280 1.70026 1.32970 1.38774 1.16350 0.85613 0.78836 0.79194
0.78738 1.18519 1.19956 1.16545 0.88703 0.86505 0.90229 0.75571
0.89209 0.85686 0.85006 0.87154 0.90736 0.87205 0.89049 0.91824
0.96394 0.96920 0.91773
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.10 -0.64 9.70 71.24 0.69 0.05 16
2 C 0.09 1.04 6.59 40.71 0.27 1.31 16
3 C -0.22 -2.18 11.24 66.67 0.75 -1.43 16
4 S 0.00 0.04 22.97 -56.49 -1.30 -1.26 16
5 C 0.46 10.58 8.27 129.87 1.07 11.65 16
6 O -0.52 -15.85 17.55 -4.75 -0.08 -15.94 16
7 N -0.53 -9.21 2.60 -643.43 -1.68 -10.89 16
8 C 0.12 2.04 4.56 86.38 0.39 2.44 16
9 C -0.12 -2.38 6.14 29.85 0.18 -2.20 16
10 C 0.47 12.12 7.96 71.24 0.57 12.68 16
11 O -0.53 -15.15 15.73 21.95 0.35 -14.80 16
12 O -0.36 -10.80 10.19 -48.69 -0.50 -11.30 16
13 C 0.07 2.05 5.84 71.98 0.42 2.47 16
14 C 0.05 1.52 6.33 71.98 0.46 1.98 16
15 O -0.41 -18.22 10.30 -145.57 -1.50 -19.72 16
16 C 0.18 8.64 4.76 71.23 0.34 8.98 16
17 C -0.55 -32.73 9.99 25.60 0.26 -32.48 16
18 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16
19 C 0.01 0.75 5.47 84.65 0.46 1.21 16
20 N -0.94 -58.43 13.96 21.45 0.30 -58.13 16
21 Si 0.96 42.27 27.47 68.60 1.88 44.15 16
22 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16
23 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16
24 H -0.24 -9.72 6.54 99.48 0.65 -9.06 16
25 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16
26 H 0.12 0.17 8.10 -2.39 -0.02 0.15 16
27 H 0.08 0.51 6.18 -2.38 -0.01 0.50 16
28 H 0.23 0.59 8.06 -2.91 -0.02 0.57 16
29 H 0.09 1.89 7.76 -2.39 -0.02 1.87 16
30 H 0.13 1.71 6.07 -2.39 -0.01 1.69 16
31 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16
32 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16
33 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16
34 H 0.11 2.39 8.13 -2.39 -0.02 2.37 16
35 H 0.09 2.38 8.14 -2.38 -0.02 2.36 16
36 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
37 H 0.02 0.83 7.20 -2.39 -0.02 0.82 16
38 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16
39 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16
Total: -1.00 -79.48 352.66 4.35 -75.14
By element:
Atomic # 1 Polarization: 5.06 SS G_CDS: 1.01 Total: 6.07 kcal
Atomic # 6 Polarization: 0.81 SS G_CDS: 5.86 Total: 6.67 kcal
Atomic # 7 Polarization: -67.64 SS G_CDS: -1.38 Total: -69.02 kcal
Atomic # 8 Polarization: -60.02 SS G_CDS: -1.73 Total: -61.76 kcal
Atomic # 14 Polarization: 42.27 SS G_CDS: 1.88 Total: 44.15 kcal
Atomic # 16 Polarization: 0.04 SS G_CDS: -1.30 Total: -1.26 kcal
Total: -79.48 4.35 -75.14 kcal
The number of atoms in the molecule is 39
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000815174045.mol2 39
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -83.503 kcal
(2) G-P(sol) polarization free energy of solvation -79.484 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.348 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.136 kcal
(6) G-S(sol) free energy of system = (1) + (5) -158.639 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds