Wall clock time and date at job start Tue Mar 31 2020 11:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00015 * 2 1 4 4 C 1.52999 * 109.47379 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47284 * 64.99918 * 4 3 2 6 6 C 1.36941 * 119.99569 * 270.00378 * 5 4 3 7 7 H 1.08000 * 120.00284 * 6.00801 * 6 5 4 8 8 C 1.38816 * 119.99649 * 186.00939 * 6 5 4 9 9 N 1.31619 * 120.00437 * 354.51711 * 8 6 5 10 10 Si 1.86801 * 119.99697 * 174.51121 * 8 6 5 11 11 H 1.48500 * 109.47476 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47028 * 120.00515 * 10 8 6 13 13 H 1.48506 * 109.47180 * 240.00201 * 10 8 6 14 14 C 1.46496 * 120.00273 * 89.99688 * 5 4 3 15 15 N 1.46507 * 109.46895 * 95.12472 * 14 5 4 16 16 N 1.37786 * 122.73010 * 84.77308 * 15 14 5 17 17 C 1.27779 * 116.35084 * 180.02562 * 16 15 14 18 18 C 1.50696 * 124.99576 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49936 * 188.62495 * 18 17 16 20 20 C 1.52994 * 117.49879 * 120.00093 * 18 17 16 21 21 S 1.75938 * 110.00496 * 0.26603 * 17 16 15 22 22 C 1.33551 * 122.73035 * 264.80216 * 15 14 5 23 23 S 1.71200 * 125.71590 * 359.95209 * 22 15 14 24 24 H 1.08997 * 109.47133 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47163 * 300.00284 * 1 2 3 26 26 H 1.09006 * 109.47100 * 60.00538 * 1 2 3 27 27 H 1.09004 * 109.47431 * 59.99543 * 3 2 1 28 28 H 1.09001 * 109.47284 * 299.99577 * 3 2 1 29 29 H 1.08998 * 109.47120 * 304.99540 * 4 3 2 30 30 H 1.08995 * 109.47553 * 184.99772 * 4 3 2 31 31 H 0.96999 * 120.00231 * 185.01600 * 9 8 6 32 32 H 1.08999 * 109.46970 * 335.12582 * 14 5 4 33 33 H 1.09001 * 109.47483 * 215.12048 * 14 5 4 34 34 H 1.09002 * 115.54802 * 334.33176 * 18 17 16 35 35 H 1.09006 * 117.49779 * 359.97438 * 19 18 17 36 36 H 1.08995 * 117.50135 * 145.01802 * 19 18 17 37 37 H 1.09004 * 117.49994 * 214.97530 * 20 18 17 38 38 H 1.09000 * 117.50237 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.0978 -0.7975 -1.3343 7 1 3.7765 -1.4197 -0.5121 8 6 4.6337 -1.3779 -2.4758 9 7 4.9251 -0.6306 -3.5194 10 14 4.9413 -3.2196 -2.5307 11 1 4.5314 -3.8287 -1.2399 12 1 4.1506 -3.8208 -3.6345 13 1 6.3862 -3.4735 -2.7616 14 6 4.2883 1.3997 -2.4130 15 7 5.7280 1.6683 -2.4494 16 7 6.6337 0.7998 -3.0187 17 6 7.8605 1.1555 -2.9823 18 6 9.0086 0.3578 -3.5448 19 6 10.4257 0.8425 -3.2323 20 6 9.8527 1.0110 -4.6409 21 16 8.0127 2.7102 -2.1730 22 6 6.2695 2.7745 -1.9331 23 16 5.4130 4.0400 -1.1612 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6885 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8507 0.5686 0.8427 30 1 3.9784 2.1765 0.0902 31 1 5.2308 -1.0441 -4.3418 32 1 3.7447 2.3416 -2.3393 33 1 3.9925 0.8798 -3.3243 34 1 8.8470 -0.7183 -3.6081 35 1 10.5276 1.7388 -2.6202 36 1 11.1967 0.0854 -3.0898 37 1 10.2468 0.3646 -5.4252 38 1 9.5774 2.0176 -4.9556 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000840152976.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:27:03 Heat of formation + Delta-G solvation = 112.171350 kcal Electronic energy + Delta-G solvation = -22725.690704 eV Core-core repulsion = 19439.769962 eV Total energy + Delta-G solvation = -3285.920742 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -39.64942 -37.58764 -37.24109 -35.56992 -32.23739 -31.79242 -28.69551 -27.00305 -25.87669 -25.49101 -23.62021 -22.52000 -22.19401 -20.58203 -20.28748 -18.47448 -17.70990 -16.64860 -15.92698 -15.70932 -15.39428 -14.91403 -14.61176 -14.53568 -14.39954 -14.13458 -13.63152 -13.21473 -12.51036 -12.23652 -11.98748 -11.74502 -11.63212 -11.39530 -11.29136 -11.23832 -11.07515 -11.00089 -10.58749 -10.54781 -10.48425 -10.24933 -10.07810 -9.86433 -9.68289 -9.10343 -8.94659 -8.92410 -7.46109 -7.02622 -6.99141 -5.86974 -3.42322 0.99321 1.21566 1.72456 2.32611 2.62074 3.02953 3.25967 3.31273 3.34570 3.84181 4.24530 4.40729 4.47293 4.74723 4.89484 5.09908 5.19351 5.33728 5.53285 5.56412 5.59763 5.67250 5.78711 5.89329 5.91045 5.97916 5.99295 6.03636 6.08461 6.35320 6.44123 6.68680 7.14653 7.20561 7.56383 7.74514 7.96276 8.27455 8.90559 9.44837 9.83607 10.96537 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.012908 B = 0.006354 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.620218 B = 4405.862193 C = 6230.648519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.369 6.369 3 C 0.051 3.949 4 C 0.123 3.877 5 N -0.547 5.547 6 C -0.241 4.241 7 H 0.089 0.911 8 C -0.002 4.002 9 N -0.874 5.874 10 Si 0.922 3.078 11 H -0.279 1.279 12 H -0.289 1.289 13 H -0.289 1.289 14 C 0.326 3.674 15 N -0.282 5.282 16 N -0.118 5.118 17 C 0.048 3.952 18 C -0.069 4.069 19 C -0.168 4.168 20 C -0.159 4.159 21 S 0.023 5.977 22 C 0.234 3.766 23 S -0.579 6.579 24 H 0.077 0.923 25 H 0.029 0.971 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.261 0.739 32 H 0.074 0.926 33 H 0.171 0.829 34 H 0.134 0.866 35 H 0.099 0.901 36 H 0.107 0.893 37 H 0.106 0.894 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.761 1.084 -1.210 5.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.287 6.287 3 C -0.028 4.028 4 C -0.004 4.004 5 N -0.262 5.262 6 C -0.371 4.371 7 H 0.107 0.893 8 C -0.200 4.200 9 N -0.519 5.519 10 Si 0.752 3.248 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.215 1.215 14 C 0.119 3.881 15 N -0.077 5.077 16 N 0.069 4.931 17 C -0.252 4.252 18 C -0.092 4.092 19 C -0.206 4.206 20 C -0.198 4.198 21 S 0.258 5.742 22 C -0.140 4.140 23 S -0.450 6.450 24 H 0.095 0.905 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.106 0.894 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.187 0.813 34 H 0.152 0.848 35 H 0.117 0.883 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.488 1.523 -0.852 4.816 hybrid contribution -0.199 -1.492 -0.302 1.536 sum 4.290 0.030 -1.154 4.442 Atomic orbital electron populations 1.22629 0.83124 1.01783 0.98890 1.88075 1.17723 1.27850 1.95060 1.23214 0.96597 0.84387 0.98634 1.21437 0.90725 0.99153 0.89039 1.44865 1.69149 1.04038 1.08136 1.19641 1.33841 0.81253 1.02414 0.89336 1.24889 0.99606 0.98943 0.96544 1.69517 1.47230 1.32449 1.02751 0.85893 0.77513 0.83796 0.77633 1.20420 1.21534 1.21540 1.23670 0.73582 0.94585 0.96214 1.53752 1.11024 1.07742 1.35210 1.74781 0.96635 1.12970 1.08717 1.27907 0.96434 0.96920 1.03989 1.20182 0.86574 0.98749 1.03648 1.23137 0.94784 1.03587 0.99134 1.23092 1.01984 1.02612 0.92093 1.85938 1.06547 1.21740 1.59996 1.29329 0.97308 0.95287 0.92036 1.92543 1.67021 1.30297 1.55131 0.90457 0.95240 0.94764 0.94476 0.93868 0.92469 0.89406 0.92711 0.90844 0.81325 0.84788 0.88289 0.87440 0.87597 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.22 10.18 -35.23 -0.36 -7.58 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.12 2.56 6.07 -4.04 -0.02 2.54 16 5 N -0.55 -12.74 2.75 -176.95 -0.49 -13.22 16 6 C -0.24 -6.04 9.32 -15.06 -0.14 -6.18 16 7 H 0.09 2.29 7.83 -52.49 -0.41 1.88 16 8 C 0.00 -0.04 5.31 -17.43 -0.09 -0.13 16 9 N -0.87 -21.27 6.31 55.49 0.35 -20.92 16 10 Si 0.92 20.38 29.56 -169.99 -5.02 15.36 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 14 C 0.33 7.46 5.75 -63.75 -0.37 7.10 16 15 N -0.28 -6.28 3.67 -64.08 -0.24 -6.51 16 16 N -0.12 -2.55 8.41 33.14 0.28 -2.27 16 17 C 0.05 0.86 7.24 -13.97 -0.10 0.76 16 18 C -0.07 -0.97 6.33 -91.78 -0.58 -1.55 16 19 C -0.17 -1.80 10.04 -26.73 -0.27 -2.07 16 20 C -0.16 -1.72 10.23 -26.73 -0.27 -1.99 16 21 S 0.02 0.41 22.17 -107.50 -2.38 -1.97 16 22 C 0.23 5.05 7.54 53.51 0.40 5.45 16 23 S -0.58 -13.12 28.33 -107.50 -3.05 -16.17 16 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 1.21 8.04 -51.93 -0.42 0.79 16 30 H 0.09 1.87 6.52 -51.93 -0.34 1.53 16 31 H 0.26 6.28 8.32 -40.82 -0.34 5.94 16 32 H 0.07 1.65 6.97 -51.93 -0.36 1.29 16 33 H 0.17 4.18 5.36 -53.20 -0.29 3.90 16 34 H 0.13 1.91 8.14 -51.93 -0.42 1.49 16 35 H 0.10 1.08 7.25 -51.93 -0.38 0.71 16 36 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.11 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 341.40 15.07 5.14 5.14 Total: -1.00 -27.94 341.40 -10.99 -38.92 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -5.13 Total: 2.51 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -0.10 Total: 6.71 kcal Atomic # 7 Polarization: -42.84 SS G_CDS: -0.09 Total: -42.93 kcal Atomic # 8 Polarization: -7.22 SS G_CDS: -0.36 Total: -7.58 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Atomic # 16 Polarization: -12.71 SS G_CDS: -5.43 Total: -18.14 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.94 -10.99 -38.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000840152976.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.096 kcal (2) G-P(sol) polarization free energy of solvation -27.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds