Wall clock time and date at job start Tue Mar 31 2020 10:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.84850 * 2 1 4 4 N 1.46502 * 109.47000 * 48.80913 * 3 2 1 5 5 C 1.34777 * 120.00062 * 179.97438 * 4 3 2 6 6 O 1.21762 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.46234 * 120.00045 * 179.97438 * 5 4 3 8 8 S 1.75665 * 125.22712 * 0.03220 * 7 5 4 9 9 C 1.75471 * 92.09431 * 179.97438 * 8 7 5 10 10 C 1.32767 * 111.36085 * 359.73107 * 9 8 7 11 11 C 1.39539 * 125.23118 * 179.97438 * 7 5 4 12 12 C 1.40540 * 123.71469 * 0.02562 * 11 7 5 13 13 H 1.08004 * 120.00051 * 335.71790 * 12 11 7 14 14 C 1.40306 * 120.00428 * 155.71312 * 12 11 7 15 15 N 1.30645 * 119.99696 * 339.52682 * 14 12 11 16 16 Si 1.86794 * 120.00365 * 159.52472 * 14 12 11 17 17 H 1.48500 * 109.47423 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47273 * 300.00550 * 16 14 12 19 19 H 1.48502 * 109.47039 * 60.00366 * 16 14 12 20 20 C 1.53775 * 113.69493 * 131.27535 * 2 1 3 21 21 C 1.53781 * 87.08494 * 89.12455 * 20 2 1 22 22 F 1.39898 * 113.61413 * 270.88574 * 21 20 2 23 23 F 1.39896 * 113.69084 * 139.99123 * 21 20 2 24 24 C 1.53782 * 87.08101 * 25.43149 * 21 20 2 25 25 H 1.08995 * 109.47373 * 69.66291 * 1 2 3 26 26 H 1.09001 * 109.47008 * 189.66590 * 1 2 3 27 27 H 1.08999 * 109.46811 * 309.65782 * 1 2 3 28 28 H 1.09004 * 109.47132 * 288.80908 * 3 2 1 29 29 H 1.09000 * 109.47112 * 168.80837 * 3 2 1 30 30 H 0.96998 * 120.00107 * 359.97438 * 4 3 2 31 31 H 1.08002 * 124.32446 * 179.97438 * 9 8 7 32 32 H 1.07997 * 122.78709 * 180.23016 * 10 9 8 33 33 H 0.96997 * 119.99920 * 353.99866 * 15 14 12 34 34 H 1.09003 * 113.61667 * 203.67514 * 20 2 1 35 35 H 1.08997 * 113.61456 * 334.57634 * 20 2 1 36 36 H 1.08993 * 113.61861 * 220.01609 * 24 21 20 37 37 H 1.09007 * 113.61349 * 89.11232 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2131 1.0394 5 6 1.8408 3.4971 1.2251 6 8 2.7098 3.9896 0.5287 7 6 1.1930 4.2990 2.2623 8 16 -0.0717 3.7302 3.3407 9 6 -0.1769 5.2873 4.1429 10 6 0.6861 6.1554 3.6289 11 6 1.4851 5.6332 2.5481 12 6 2.4549 6.3838 1.8617 13 1 3.2721 5.8834 1.3635 14 6 2.3614 7.7832 1.8235 15 7 1.2166 8.3680 2.0561 16 14 3.8739 8.8102 1.4401 17 1 3.5124 10.2504 1.4598 18 1 4.9215 8.5483 2.4595 19 1 4.3901 8.4484 0.0955 20 6 2.1480 -0.9289 1.0583 21 6 2.0951 -2.0420 -0.0015 22 9 0.8944 -2.7599 -0.0007 23 9 3.2229 -2.8696 -0.0042 24 6 2.1460 -0.9280 -1.0604 25 1 -0.3634 0.3571 -0.9635 26 1 -0.3633 -1.0131 0.1726 27 1 -0.3633 0.6559 0.7912 28 1 1.9598 1.8734 -0.9728 29 1 3.1942 1.3533 0.1995 30 1 0.7830 1.8209 1.5940 31 1 -0.8543 5.5099 4.9541 32 1 0.7795 7.1696 3.9880 33 1 0.4139 7.8352 2.1690 34 1 3.1611 -0.6488 1.3471 35 1 1.4975 -1.1095 1.9140 36 1 1.4939 -1.1078 -1.9151 37 1 3.1585 -0.6476 -1.3509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881528189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:30 Heat of formation + Delta-G solvation = -106.512768 kcal Electronic energy + Delta-G solvation = -23723.184107 eV Core-core repulsion = 19841.647372 eV Total energy + Delta-G solvation = -3881.536735 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.00059 -47.31961 -39.53652 -37.96126 -36.38646 -33.46330 -33.05736 -29.57066 -28.94147 -27.14593 -26.54454 -25.26752 -22.76432 -22.05984 -20.11644 -19.17132 -19.01274 -18.16835 -17.28534 -16.70447 -16.52114 -16.30200 -15.17438 -14.70969 -14.65928 -14.24894 -14.18351 -13.98385 -13.75146 -13.71537 -13.52339 -13.20822 -13.10949 -12.74045 -12.40840 -12.23667 -12.05595 -11.87075 -11.46714 -11.23744 -11.12153 -10.93300 -10.79598 -10.69672 -10.56947 -10.46475 -10.12552 -9.78159 -9.19258 -8.56224 -8.32726 -7.80900 -7.39332 -7.35336 -4.62731 1.99212 2.89833 3.03505 3.09024 3.29675 3.30364 3.50438 3.55707 3.64493 3.87658 3.88752 4.06612 4.12891 4.35918 4.39577 4.89264 4.98723 5.06743 5.18506 5.24237 5.37679 5.44733 5.67389 5.75980 5.78286 5.81072 5.95708 6.00656 6.15023 6.37867 6.73407 6.93813 7.14395 7.24046 7.26773 7.73260 7.90144 8.37101 8.45311 8.70371 9.50867 9.73776 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.003404 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.024942 B = 8222.966911 C = 9192.552223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C 0.149 3.851 4 N -0.750 5.750 5 C 0.599 3.401 6 O -0.564 6.564 7 C -0.438 4.438 8 S -0.039 6.039 9 C -0.186 4.186 10 C -0.142 4.142 11 C 0.112 3.888 12 C -0.424 4.424 13 H 0.110 0.890 14 C 0.029 3.971 15 N -0.777 5.777 16 Si 1.074 2.926 17 H -0.272 1.272 18 H -0.271 1.271 19 H -0.269 1.269 20 C -0.156 4.156 21 C 0.253 3.747 22 F -0.179 7.179 23 F -0.193 7.193 24 C -0.152 4.152 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.390 0.610 31 H 0.141 0.859 32 H 0.131 0.869 33 H 0.301 0.699 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.841 -12.484 -1.911 12.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.090 4.090 3 C 0.025 3.975 4 N -0.405 5.405 5 C 0.397 3.603 6 O -0.448 6.448 7 C -0.557 4.557 8 S 0.217 5.783 9 C -0.320 4.320 10 C -0.175 4.175 11 C 0.101 3.899 12 C -0.454 4.454 13 H 0.128 0.872 14 C -0.195 4.195 15 N -0.400 5.400 16 Si 0.896 3.104 17 H -0.196 1.196 18 H -0.196 1.196 19 H -0.194 1.194 20 C -0.194 4.194 21 C 0.217 3.783 22 F -0.160 7.160 23 F -0.174 7.174 24 C -0.190 4.190 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.224 0.776 31 H 0.159 0.841 32 H 0.149 0.851 33 H 0.115 0.885 34 H 0.133 0.867 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.486 -11.961 -2.345 12.198 hybrid contribution -0.467 -0.768 0.420 0.992 sum -0.953 -12.729 -1.925 12.909 Atomic orbital electron populations 1.21748 0.91726 1.02959 1.03297 1.21893 0.96964 0.94831 0.95303 1.20914 0.96458 0.87444 0.92724 1.45854 1.43376 1.12615 1.38633 1.16785 0.81607 0.79622 0.82331 1.90662 1.33753 1.71293 1.49061 1.22413 1.17319 1.01072 1.14853 1.82719 1.43337 1.14950 1.37290 1.24936 1.04830 0.97451 1.04796 1.21596 0.97903 0.99884 0.98132 1.17899 0.90470 0.90769 0.90713 1.20989 1.07503 0.92953 1.23982 0.87242 1.27560 1.03098 0.97068 0.91806 1.70443 1.00948 1.42524 1.26074 0.83502 0.73006 0.75552 0.78389 1.19637 1.19592 1.19408 1.24266 1.04770 0.92513 0.97861 1.22104 0.71534 0.83024 1.01636 1.92982 1.45199 1.80532 1.97304 1.93002 1.51139 1.75939 1.97301 1.24155 1.04689 0.92512 0.97689 0.91372 0.91272 0.91313 0.91693 0.91829 0.77570 0.84122 0.85137 0.88522 0.86689 0.88664 0.88575 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.87 37.16 0.33 -1.18 16 2 C -0.09 -0.99 1.09 -153.70 -0.17 -1.16 16 3 C 0.15 2.21 5.15 -4.04 -0.02 2.19 16 4 N -0.75 -13.64 5.27 -61.75 -0.33 -13.96 16 5 C 0.60 14.24 7.76 -13.05 -0.10 14.14 16 6 O -0.56 -15.14 14.46 5.13 0.07 -15.06 16 7 C -0.44 -10.75 6.51 -35.89 -0.23 -10.98 16 8 S -0.04 -0.78 22.25 -107.50 -2.39 -3.18 16 9 C -0.19 -3.82 11.07 28.86 0.32 -3.50 16 10 C -0.14 -3.29 8.19 -39.12 -0.32 -3.61 16 11 C 0.11 2.90 5.40 -106.21 -0.57 2.33 16 12 C -0.42 -11.27 8.44 -37.94 -0.32 -11.59 16 13 H 0.11 3.08 6.13 -52.48 -0.32 2.76 16 14 C 0.03 0.70 5.24 -17.28 -0.09 0.61 16 15 N -0.78 -19.32 12.49 55.57 0.69 -18.63 16 16 Si 1.07 20.98 29.98 -169.99 -5.10 15.89 16 17 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 18 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 19 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 20 C -0.16 -1.64 7.00 -25.92 -0.18 -1.82 16 21 C 0.25 2.71 3.26 -25.92 -0.08 2.63 16 22 F -0.18 -2.08 15.52 2.25 0.03 -2.04 16 23 F -0.19 -2.31 17.41 2.25 0.04 -2.27 16 24 C -0.15 -1.44 7.02 -25.91 -0.18 -1.62 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.07 0.69 6.20 -51.93 -0.32 0.37 16 27 H 0.07 0.80 6.28 -51.93 -0.33 0.47 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.06 0.96 7.94 -51.93 -0.41 0.55 16 30 H 0.39 6.47 5.82 -40.82 -0.24 6.23 16 31 H 0.14 2.40 8.06 -52.49 -0.42 1.98 16 32 H 0.13 2.98 6.79 -52.49 -0.36 2.62 16 33 H 0.30 7.58 6.22 -40.82 -0.25 7.33 16 34 H 0.11 1.18 7.96 -51.93 -0.41 0.76 16 35 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 36 H 0.10 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.12 0.99 8.10 -51.93 -0.42 0.57 16 LS Contribution 325.71 15.07 4.91 4.91 Total: -1.00 -29.01 325.71 -7.66 -36.67 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -3.97 Total: 11.24 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -1.63 Total: -13.57 kcal Atomic # 7 Polarization: -32.96 SS G_CDS: 0.37 Total: -32.59 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.07 Total: -15.06 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.07 Total: -4.31 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.10 Total: 15.89 kcal Atomic # 16 Polarization: -0.78 SS G_CDS: -2.39 Total: -3.18 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -29.01 -7.66 -36.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881528189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.844 kcal (2) G-P(sol) polarization free energy of solvation -29.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds