Wall clock time and date at job start Tue Mar 31 2020 10:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 112.84850 * 2 1 4 4 N 1.46502 * 109.47000 * 48.80913 * 3 2 1 5 5 C 1.34777 * 120.00062 * 179.97438 * 4 3 2 6 6 O 1.21762 * 119.99887 * 0.02562 * 5 4 3 7 7 C 1.46234 * 120.00045 * 179.97438 * 5 4 3 8 8 S 1.75665 * 125.22712 * 0.03220 * 7 5 4 9 9 C 1.75471 * 92.09431 * 179.97438 * 8 7 5 10 10 C 1.32767 * 111.36085 * 359.73107 * 9 8 7 11 11 C 1.39539 * 125.23118 * 179.97438 * 7 5 4 12 12 C 1.40540 * 123.71469 * 0.02562 * 11 7 5 13 13 H 1.08004 * 120.00051 * 335.71790 * 12 11 7 14 14 C 1.40306 * 120.00428 * 155.71312 * 12 11 7 15 15 N 1.30645 * 119.99696 * 339.52682 * 14 12 11 16 16 Si 1.86794 * 120.00365 * 159.52472 * 14 12 11 17 17 H 1.48500 * 109.47423 * 179.97438 * 16 14 12 18 18 H 1.48500 * 109.47273 * 300.00550 * 16 14 12 19 19 H 1.48502 * 109.47039 * 60.00366 * 16 14 12 20 20 C 1.53775 * 113.69493 * 131.27535 * 2 1 3 21 21 C 1.53781 * 87.08494 * 89.12455 * 20 2 1 22 22 F 1.39898 * 113.61413 * 270.88574 * 21 20 2 23 23 F 1.39896 * 113.69084 * 139.99123 * 21 20 2 24 24 C 1.53782 * 87.08101 * 25.43149 * 21 20 2 25 25 H 1.08995 * 109.47373 * 69.66291 * 1 2 3 26 26 H 1.09001 * 109.47008 * 189.66590 * 1 2 3 27 27 H 1.08999 * 109.46811 * 309.65782 * 1 2 3 28 28 H 1.09004 * 109.47132 * 288.80908 * 3 2 1 29 29 H 1.09000 * 109.47112 * 168.80837 * 3 2 1 30 30 H 0.96998 * 120.00107 * 359.97438 * 4 3 2 31 31 H 1.08002 * 124.32446 * 179.97438 * 9 8 7 32 32 H 1.07997 * 122.78709 * 180.23016 * 10 9 8 33 33 H 0.96997 * 119.99920 * 353.99866 * 15 14 12 34 34 H 1.09003 * 113.61667 * 203.67514 * 20 2 1 35 35 H 1.08997 * 113.61456 * 334.57634 * 20 2 1 36 36 H 1.08993 * 113.61861 * 220.01609 * 24 21 20 37 37 H 1.09007 * 113.61349 * 89.11232 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1241 1.4099 0.0000 4 7 1.4754 2.2131 1.0394 5 6 1.8408 3.4971 1.2251 6 8 2.7098 3.9896 0.5287 7 6 1.1930 4.2990 2.2623 8 16 -0.0717 3.7302 3.3407 9 6 -0.1769 5.2873 4.1429 10 6 0.6861 6.1554 3.6289 11 6 1.4851 5.6332 2.5481 12 6 2.4549 6.3838 1.8617 13 1 3.2721 5.8834 1.3635 14 6 2.3614 7.7832 1.8235 15 7 1.2166 8.3680 2.0561 16 14 3.8739 8.8102 1.4401 17 1 3.5124 10.2504 1.4598 18 1 4.9215 8.5483 2.4595 19 1 4.3901 8.4484 0.0955 20 6 2.1480 -0.9289 1.0583 21 6 2.0951 -2.0420 -0.0015 22 9 0.8944 -2.7599 -0.0007 23 9 3.2229 -2.8696 -0.0042 24 6 2.1460 -0.9280 -1.0604 25 1 -0.3634 0.3571 -0.9635 26 1 -0.3633 -1.0131 0.1726 27 1 -0.3633 0.6559 0.7912 28 1 1.9598 1.8734 -0.9728 29 1 3.1942 1.3533 0.1995 30 1 0.7830 1.8209 1.5940 31 1 -0.8543 5.5099 4.9541 32 1 0.7795 7.1696 3.9880 33 1 0.4139 7.8352 2.1690 34 1 3.1611 -0.6488 1.3471 35 1 1.4975 -1.1095 1.9140 36 1 1.4939 -1.1078 -1.9151 37 1 3.1585 -0.6476 -1.3509 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881528189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:30 Heat of formation + Delta-G solvation = -122.799517 kcal Electronic energy + Delta-G solvation = -23723.890354 eV Core-core repulsion = 19841.647372 eV Total energy + Delta-G solvation = -3882.242982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.88207 -48.21087 -40.75449 -39.53207 -38.16234 -35.05728 -34.86877 -31.10237 -30.24298 -28.56160 -27.38830 -26.86838 -24.37017 -23.22874 -21.81073 -20.89942 -20.22470 -19.45249 -18.39529 -18.17626 -17.62650 -17.35043 -16.60472 -16.33046 -16.09584 -15.75724 -15.52678 -15.15375 -15.05769 -14.86652 -14.73113 -14.47896 -14.27751 -14.07994 -13.89348 -13.72400 -13.25162 -13.23462 -12.95625 -12.75049 -12.51190 -12.18690 -12.02012 -11.91234 -11.87257 -11.74348 -11.51086 -11.40743 -10.97924 -10.45635 -9.97569 -9.65182 -9.22400 -9.12272 -6.53554 0.18929 1.20419 1.39697 1.48020 1.66317 1.79945 1.90382 2.26201 2.42051 2.46728 2.51667 2.80715 3.15667 3.19095 3.25036 3.34232 3.88452 4.05878 4.20287 4.28050 4.46148 4.51864 4.58453 4.63965 4.68854 4.75194 4.87514 4.95730 5.00904 5.02804 5.18575 5.26953 5.35037 5.38336 5.67835 5.87472 5.94486 6.49793 6.63500 6.91336 7.69370 7.84122 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.020463 B = 0.003404 C = 0.003045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.024942 B = 8222.966911 C = 9192.552223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.084 4.084 3 C 0.148 3.852 4 N -0.732 5.732 5 C 0.590 3.410 6 O -0.604 6.604 7 C -0.471 4.471 8 S 0.030 5.970 9 C -0.169 4.169 10 C -0.172 4.172 11 C 0.089 3.911 12 C -0.467 4.467 13 H 0.082 0.918 14 C 0.003 3.997 15 N -0.789 5.789 16 Si 1.118 2.882 17 H -0.259 1.259 18 H -0.258 1.258 19 H -0.268 1.268 20 C -0.156 4.156 21 C 0.253 3.747 22 F -0.183 7.183 23 F -0.200 7.200 24 C -0.142 4.142 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.399 0.601 31 H 0.183 0.817 32 H 0.127 0.873 33 H 0.290 0.710 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -13.842 -1.391 14.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.085 4.085 3 C 0.024 3.976 4 N -0.386 5.386 5 C 0.386 3.614 6 O -0.490 6.490 7 C -0.590 4.590 8 S 0.287 5.713 9 C -0.304 4.304 10 C -0.206 4.206 11 C 0.078 3.922 12 C -0.497 4.497 13 H 0.100 0.900 14 C -0.217 4.217 15 N -0.412 5.412 16 Si 0.934 3.066 17 H -0.183 1.183 18 H -0.183 1.183 19 H -0.193 1.193 20 C -0.194 4.194 21 C 0.217 3.783 22 F -0.164 7.164 23 F -0.181 7.181 24 C -0.181 4.181 25 H 0.091 0.909 26 H 0.099 0.901 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.236 0.764 31 H 0.200 0.800 32 H 0.145 0.855 33 H 0.103 0.897 34 H 0.135 0.865 35 H 0.120 0.880 36 H 0.130 0.870 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.418 -13.387 -1.812 13.584 hybrid contribution -0.299 -0.577 0.281 0.707 sum -1.717 -13.964 -1.532 14.152 Atomic orbital electron populations 1.21749 0.91178 1.03445 1.03221 1.21784 0.97251 0.92520 0.96905 1.21070 0.96362 0.89031 0.91127 1.45655 1.42925 1.11092 1.38893 1.16993 0.81237 0.81161 0.82007 1.90632 1.35406 1.72579 1.50370 1.22997 1.18573 1.01512 1.15913 1.82330 1.40336 1.13791 1.34856 1.25487 1.03527 0.96849 1.04515 1.21464 0.99731 1.00626 0.98735 1.18365 0.90867 0.91701 0.91293 1.20959 1.08195 0.94267 1.26327 0.90008 1.28720 1.04932 0.97364 0.90675 1.70531 1.00868 1.41981 1.27804 0.82982 0.70354 0.74761 0.78470 1.18267 1.18276 1.19334 1.24295 1.05030 0.92067 0.97991 1.22133 0.71139 0.82895 1.02180 1.92975 1.45402 1.80687 1.97351 1.92991 1.51552 1.76186 1.97359 1.24162 1.05528 0.90855 0.97521 0.90931 0.90112 0.92278 0.92483 0.92182 0.76416 0.79962 0.85483 0.89666 0.86490 0.87952 0.86994 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.87 71.98 0.64 -2.04 16 2 C -0.08 -1.70 1.09 -51.65 -0.06 -1.76 16 3 C 0.15 4.27 5.15 86.38 0.44 4.71 16 4 N -0.73 -26.23 5.27 -467.47 -2.47 -28.69 16 5 C 0.59 28.47 7.76 86.32 0.67 29.14 16 6 O -0.60 -33.65 14.46 -4.55 -0.07 -33.71 16 7 C -0.47 -23.27 6.51 24.66 0.16 -23.11 16 8 S 0.03 1.16 22.25 -56.49 -1.26 -0.10 16 9 C -0.17 -6.56 11.07 66.64 0.74 -5.83 16 10 C -0.17 -7.98 8.19 22.61 0.19 -7.80 16 11 C 0.09 4.71 5.40 -20.89 -0.11 4.59 16 12 C -0.47 -25.98 8.44 23.33 0.20 -25.78 16 13 H 0.08 4.90 6.13 -2.91 -0.02 4.88 16 14 C 0.00 0.13 5.24 85.37 0.45 0.57 16 15 N -0.79 -40.19 12.49 21.89 0.27 -39.92 16 16 Si 1.12 43.15 29.98 68.60 2.06 45.21 16 17 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 19 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 20 C -0.16 -2.95 7.00 31.12 0.22 -2.73 16 21 C 0.25 4.85 3.26 31.12 0.10 4.95 16 22 F -0.18 -3.80 15.52 44.97 0.70 -3.10 16 23 F -0.20 -4.41 17.41 44.97 0.78 -3.63 16 24 C -0.14 -2.37 7.02 31.12 0.22 -2.15 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.08 1.40 6.20 -2.39 -0.01 1.38 16 27 H 0.06 1.25 6.28 -2.39 -0.01 1.23 16 28 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.06 1.80 7.94 -2.39 -0.02 1.78 16 30 H 0.40 12.66 5.82 -92.71 -0.54 12.12 16 31 H 0.18 5.47 8.06 -2.91 -0.02 5.45 16 32 H 0.13 5.89 6.79 -2.91 -0.02 5.87 16 33 H 0.29 15.09 6.22 -92.71 -0.58 14.52 16 34 H 0.12 2.19 7.96 -2.39 -0.02 2.18 16 35 H 0.10 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.11 1.55 8.10 -2.39 -0.02 1.53 16 37 H 0.13 1.87 8.10 -2.38 -0.02 1.85 16 Total: -1.00 -64.96 325.71 4.65 -60.31 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.78 Total: 30.86 kcal Atomic # 6 Polarization: -31.08 SS G_CDS: 3.85 Total: -27.23 kcal Atomic # 7 Polarization: -66.42 SS G_CDS: -2.19 Total: -68.61 kcal Atomic # 8 Polarization: -33.65 SS G_CDS: -0.07 Total: -33.71 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 1.48 Total: -6.73 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.06 Total: 45.21 kcal Atomic # 16 Polarization: 1.16 SS G_CDS: -1.26 Total: -0.10 kcal Total: -64.96 4.65 -60.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881528189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.490 kcal (2) G-P(sol) polarization free energy of solvation -64.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds