Wall clock time and date at job start Tue Mar 31 2020 10:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 S 2.05011 * 102.99744 * 2 1 4 4 C 1.81399 * 102.99896 * 85.00015 * 3 2 1 5 5 C 1.53002 * 109.46917 * 69.99736 * 4 3 2 6 6 N 1.46506 * 109.47041 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99968 * 179.97438 * 6 5 4 8 8 O 1.21602 * 119.99987 * 359.73127 * 7 6 5 9 9 C 1.47436 * 119.99867 * 180.02562 * 7 6 5 10 10 C 1.41286 * 126.41299 * 359.41281 * 9 7 6 11 11 N 1.30448 * 108.02337 * 179.87788 * 10 9 7 12 12 N 1.39938 * 108.89467 * 0.38911 * 11 10 9 13 13 C 1.46503 * 125.75356 * 179.75148 * 12 11 10 14 14 C 1.50696 * 109.46974 * 269.99715 * 13 12 11 15 15 H 1.08001 * 120.00163 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99873 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99984 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 120.00024 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47221 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46825 * 120.00079 * 18 16 14 21 21 H 1.48502 * 109.47073 * 240.00389 * 18 16 14 22 22 C 1.34259 * 108.48882 * 359.74809 * 12 11 10 23 23 C 1.50699 * 126.28729 * 179.97438 * 22 12 11 24 24 H 1.08998 * 109.47390 * 60.00270 * 1 2 3 25 25 H 1.08996 * 109.47218 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47382 * 300.00179 * 1 2 3 27 27 H 1.08999 * 109.47003 * 310.00405 * 4 3 2 28 28 H 1.08993 * 109.47109 * 189.99956 * 4 3 2 29 29 H 1.09004 * 109.47178 * 60.00353 * 5 4 3 30 30 H 1.08993 * 109.47411 * 300.00036 * 5 4 3 31 31 H 0.97004 * 120.00014 * 0.02562 * 6 5 4 32 32 H 1.08000 * 125.99145 * 0.03887 * 10 9 7 33 33 H 1.09004 * 109.46911 * 29.99927 * 13 12 11 34 34 H 1.09002 * 109.46643 * 149.99548 * 13 12 11 35 35 H 0.96997 * 120.00146 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47568 * 269.99949 * 23 22 12 37 37 H 1.09002 * 109.47528 * 29.99975 * 23 22 12 38 38 H 1.08998 * 109.46953 * 150.00240 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 16 2.2751 1.9976 0.0000 4 6 2.2167 2.4298 1.7608 5 6 3.3985 1.7813 2.4845 6 7 3.3518 2.1309 3.9065 7 6 4.2994 1.6681 4.7457 8 8 5.1904 0.9563 4.3235 9 6 4.2520 2.0194 6.1768 10 6 3.2874 2.8359 6.8084 11 7 3.5855 2.9056 8.0764 12 7 4.7432 2.1554 8.3117 13 6 5.4047 1.9859 9.6078 14 6 6.4279 3.0761 9.7958 15 1 6.5714 3.8206 9.0267 16 6 7.1809 3.1233 10.9499 17 7 7.0065 2.2164 11.8863 18 14 8.4497 4.4743 11.1827 19 1 8.4517 5.3621 9.9923 20 1 8.1112 5.2683 12.3912 21 1 9.7945 3.8670 11.3500 22 6 5.1452 1.6171 7.1493 23 6 6.3505 0.7362 6.9439 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.2836 2.0685 2.1929 28 1 2.2729 3.5127 1.8711 29 1 4.3318 2.1426 2.0524 30 1 3.3423 0.6984 2.3741 31 1 2.6384 2.6948 4.2441 32 1 2.4486 3.3160 6.3264 33 1 4.6629 2.0423 10.4045 34 1 5.8986 1.0147 9.6393 35 1 7.5365 2.2494 12.6980 36 1 7.2168 1.3545 6.7088 37 1 6.5454 0.1690 7.8541 38 1 6.1613 0.0477 6.1203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890454403.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:09 Heat of formation + Delta-G solvation = 25.331111 kcal Electronic energy + Delta-G solvation = -20879.529759 eV Core-core repulsion = 17589.843341 eV Total energy + Delta-G solvation = -3289.686418 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -40.80270 -38.86371 -35.30495 -33.91060 -32.17815 -31.37844 -30.62333 -29.48460 -27.36805 -26.64255 -23.97024 -23.10906 -21.85479 -20.02712 -19.38331 -19.02246 -17.17329 -16.77920 -16.35079 -15.83596 -15.63177 -15.17384 -14.72611 -14.54281 -14.39014 -14.12420 -13.95843 -13.63664 -13.45150 -13.19066 -12.63465 -12.49826 -12.44183 -12.15053 -12.05523 -12.01551 -11.78614 -11.48484 -11.11444 -10.91734 -10.73061 -10.38514 -10.20981 -9.92707 -9.45947 -9.05792 -8.79003 -8.72690 -8.60771 -8.57179 -7.93595 -6.34932 -4.42656 -1.06857 1.21901 1.60927 2.17049 2.77135 3.16230 3.18193 3.24434 3.31415 3.59662 3.89562 4.23394 4.30541 4.40671 4.58444 4.62630 4.93897 4.98647 5.08345 5.19504 5.24513 5.49966 5.50858 5.68359 5.76734 5.91923 6.12526 6.38966 6.49234 6.58016 6.78003 6.89421 7.13599 7.54927 7.66927 7.75673 7.77332 8.35385 8.57105 8.63335 9.24370 10.73359 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.033047 B = 0.002271 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.077877 B =12323.749975 C =12370.508764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 S -0.140 6.140 3 S -0.126 6.126 4 C -0.117 4.117 5 C 0.127 3.873 6 N -0.736 5.736 7 C 0.605 3.395 8 O -0.552 6.552 9 C -0.333 4.333 10 C 0.057 3.943 11 N -0.296 5.296 12 N -0.314 5.314 13 C 0.251 3.749 14 C -0.539 4.539 15 H 0.066 0.934 16 C 0.067 3.933 17 N -0.889 5.889 18 Si 0.908 3.092 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.279 1.279 22 C 0.166 3.834 23 C -0.093 4.093 24 H 0.088 0.912 25 H 0.111 0.889 26 H 0.083 0.917 27 H 0.096 0.904 28 H 0.122 0.878 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.398 0.602 32 H 0.175 0.825 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.269 0.731 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.784 -2.286 -20.889 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S -0.022 6.022 3 S -0.006 6.006 4 C -0.272 4.272 5 C 0.001 3.999 6 N -0.390 5.390 7 C 0.395 3.605 8 O -0.431 6.431 9 C -0.349 4.349 10 C -0.130 4.130 11 N -0.115 5.115 12 N -0.091 5.091 13 C 0.133 3.867 14 C -0.577 4.577 15 H 0.084 0.916 16 C -0.137 4.137 17 N -0.527 5.527 18 Si 0.735 3.265 19 H -0.195 1.195 20 H -0.206 1.206 21 H -0.205 1.205 22 C 0.029 3.971 23 C -0.151 4.151 24 H 0.107 0.893 25 H 0.129 0.871 26 H 0.102 0.898 27 H 0.115 0.885 28 H 0.140 0.860 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.192 0.808 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.415 -2.608 -20.631 23.722 hybrid contribution -0.700 1.072 0.724 1.471 sum -12.116 -1.536 -19.906 23.354 Atomic orbital electron populations 1.24046 0.94226 1.07021 1.05965 1.89631 1.10299 1.07464 1.94774 1.89457 1.88413 1.11496 1.11280 1.24238 1.02531 1.05723 0.94706 1.21555 0.97127 1.00444 0.80768 1.45725 1.30497 1.54949 1.07787 1.17305 0.80370 0.78319 0.84511 1.90707 1.35900 1.38420 1.78059 1.19647 1.04609 1.16921 0.93708 1.23699 0.99008 0.98460 0.91844 1.77135 1.01597 1.15904 1.16910 1.49375 1.17946 1.32554 1.09181 1.19868 0.92656 0.98865 0.75275 1.21280 1.19807 1.12351 1.04303 0.91612 1.24930 0.97226 0.96456 0.95099 1.69921 1.40579 1.34204 1.07992 0.86267 0.80559 0.81274 0.78415 1.19526 1.20566 1.20522 1.21484 0.95465 0.94235 0.85898 1.20578 0.93054 0.98169 1.03338 0.89348 0.87067 0.89772 0.88526 0.85972 0.90409 0.90658 0.76828 0.80828 0.92504 0.92522 0.92153 0.89784 0.90846 0.88797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 10.76 101.05 1.09 0.39 16 2 S -0.14 -1.18 22.43 -89.68 -2.01 -3.20 16 3 S -0.13 -1.05 22.25 -89.68 -2.00 -3.04 16 4 C -0.12 -0.82 6.06 37.16 0.23 -0.59 16 5 C 0.13 1.30 5.63 -4.04 -0.02 1.28 16 6 N -0.74 -8.50 5.55 -61.38 -0.34 -8.84 16 7 C 0.60 9.87 7.81 -12.52 -0.10 9.77 16 8 O -0.55 -10.55 14.84 5.28 0.08 -10.47 16 9 C -0.33 -5.99 6.13 -105.07 -0.64 -6.63 16 10 C 0.06 0.96 11.50 -16.98 -0.20 0.77 16 11 N -0.30 -6.27 12.50 30.86 0.39 -5.88 16 12 N -0.31 -7.05 3.56 -57.77 -0.21 -7.25 16 13 C 0.25 6.21 5.97 -5.19 -0.03 6.18 16 14 C -0.54 -14.48 9.39 -34.44 -0.32 -14.80 16 15 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 16 C 0.07 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -24.53 13.29 55.43 0.74 -23.79 16 18 Si 0.91 20.78 29.54 -169.99 -5.02 15.76 16 19 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 C 0.17 3.37 7.01 -81.61 -0.57 2.80 16 23 C -0.09 -1.69 9.57 36.01 0.34 -1.35 16 24 H 0.09 0.38 8.14 -51.92 -0.42 -0.04 16 25 H 0.11 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.36 8.14 -51.92 -0.42 -0.06 16 27 H 0.10 0.55 8.14 -51.92 -0.42 0.12 16 28 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.08 0.88 7.74 -51.93 -0.40 0.48 16 31 H 0.40 3.46 7.43 -40.82 -0.30 3.15 16 32 H 0.17 2.03 7.50 -52.49 -0.39 1.64 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.39 7.02 -51.93 -0.36 1.03 16 35 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 37 H 0.07 1.29 7.05 -51.93 -0.37 0.93 16 38 H 0.09 1.63 6.50 -51.93 -0.34 1.29 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -31.56 355.05 -8.44 -40.01 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -5.09 Total: 1.86 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -0.33 Total: -0.50 kcal Atomic # 7 Polarization: -46.34 SS G_CDS: 0.58 Total: -45.77 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: -2.23 SS G_CDS: -4.01 Total: -6.24 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.56 -8.44 -40.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890454403.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.337 kcal (2) G-P(sol) polarization free energy of solvation -31.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.006 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds