Wall clock time and date at job start Tue Mar 31 2020 10:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47433 * 2 1 4 4 N 1.46492 * 109.47121 * 239.99473 * 2 1 3 5 5 C 1.34775 * 120.00108 * 60.10947 * 4 2 1 6 6 O 1.21288 * 119.99704 * 359.97438 * 5 4 2 7 7 C 1.50704 * 120.00319 * 180.02562 * 5 4 2 8 8 S 1.80997 * 109.47129 * 179.97438 * 7 5 4 9 9 C 1.76203 * 99.99880 * 180.02562 * 8 7 5 10 10 H 1.07993 * 120.00048 * 359.97438 * 9 8 7 11 11 C 1.38799 * 119.99924 * 180.02562 * 9 8 7 12 12 N 1.31631 * 120.00195 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00144 * 179.97438 * 11 9 8 14 14 H 1.48506 * 109.47006 * 59.99803 * 13 11 9 15 15 H 1.48499 * 109.47488 * 179.97438 * 13 11 9 16 16 H 1.48500 * 109.47138 * 300.00019 * 13 11 9 17 17 C 1.50708 * 109.46904 * 119.99569 * 2 1 3 18 18 C 1.38224 * 119.98866 * 1.42931 * 17 2 1 19 19 C 1.38181 * 120.05271 * 180.25630 * 18 17 2 20 20 C 1.38495 * 120.02315 * 359.43985 * 19 18 17 21 21 F 1.35103 * 120.01570 * 180.28077 * 20 19 18 22 22 C 1.38400 * 119.97474 * 0.55556 * 20 19 18 23 23 C 1.38438 * 119.94672 * 359.72413 * 22 20 19 24 24 F 1.35102 * 120.01226 * 179.97438 * 23 22 20 25 25 H 1.09004 * 109.47256 * 300.00428 * 1 2 3 26 26 H 1.09002 * 109.47347 * 60.00029 * 1 2 3 27 27 H 1.08999 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47199 * 179.97438 * 3 2 1 29 29 H 1.09007 * 109.46562 * 299.99890 * 3 2 1 30 30 H 1.08994 * 109.47253 * 59.99465 * 3 2 1 31 31 H 0.96999 * 120.00319 * 240.10734 * 4 2 1 32 32 H 1.08993 * 109.46915 * 299.99431 * 7 5 4 33 33 H 1.09003 * 109.46831 * 59.99576 * 7 5 4 34 34 H 0.96998 * 120.00381 * 180.02562 * 12 11 9 35 35 H 1.08007 * 119.97346 * 359.96858 * 18 17 2 36 36 H 1.08004 * 119.99115 * 179.70550 * 19 18 17 37 37 H 1.07994 * 120.02723 * 179.74308 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1960 5 6 1.6945 -0.2291 -2.4202 6 8 0.9985 0.7579 -2.5315 7 6 2.1964 -0.9399 -3.6506 8 16 1.5952 -0.0852 -5.1285 9 6 2.3096 -1.0991 -6.3801 10 1 2.9112 -1.9528 -6.1054 11 6 2.1001 -0.7998 -7.7192 12 7 1.3672 0.2411 -8.0541 13 14 2.8580 -1.8740 -9.0460 14 1 2.3536 -3.2638 -8.9058 15 1 2.4863 -1.3456 -10.3831 16 1 4.3362 -1.8673 -8.9040 17 6 2.0323 -0.7104 1.2306 18 6 1.1342 -1.2613 2.1253 19 6 1.5931 -1.9083 3.2567 20 6 2.9541 -2.0155 3.4896 21 9 3.4028 -2.6531 4.5930 22 6 3.8544 -1.4644 2.5945 23 6 3.3932 -0.8114 1.4642 24 9 4.2708 -0.2724 0.5898 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 2.5747 -1.4802 -1.1070 32 1 3.2863 -0.9419 -3.6499 33 1 1.8310 -1.9669 -3.6513 34 1 1.2205 0.4501 -8.9898 35 1 0.0727 -1.1820 1.9422 36 1 0.8904 -2.3343 3.9575 37 1 4.9157 -1.5439 2.7774 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894772088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:26 Heat of formation + Delta-G solvation = -122.178036 kcal Electronic energy + Delta-G solvation = -23505.848056 eV Core-core repulsion = 19623.632024 eV Total energy + Delta-G solvation = -3882.216032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -50.12055 -50.04098 -41.39313 -39.83986 -36.92838 -34.58427 -33.54429 -31.93862 -30.69836 -29.84499 -28.42731 -27.65037 -24.78676 -23.83127 -22.35549 -20.76112 -19.92053 -19.29473 -18.32215 -18.15351 -17.37872 -16.98690 -16.87756 -16.79924 -16.40419 -16.37667 -16.08411 -15.87063 -15.30092 -15.15694 -14.74977 -14.53450 -14.41236 -13.95151 -13.69264 -13.56350 -13.23858 -13.16489 -12.98883 -12.88744 -12.71657 -12.61135 -12.57994 -12.25726 -11.93869 -11.74233 -11.12882 -10.67840 -10.28035 -10.20069 -10.10761 -9.73038 -8.65053 -8.34527 -6.11857 -0.21296 -0.03400 1.27160 1.43467 1.46474 1.56432 1.64449 2.12163 2.27732 2.48064 2.79764 2.99391 3.22006 3.32435 3.36875 3.54002 3.84127 3.89425 4.02289 4.08458 4.23041 4.31123 4.50460 4.61543 4.65568 4.72709 4.78813 4.86027 4.88283 4.89430 5.00618 5.13965 5.27459 5.40251 5.41555 5.54856 5.69191 6.19560 6.50200 7.06768 7.25705 8.74317 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.025481 B = 0.002832 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.590169 B = 9882.984361 C =10361.381313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.221 3.779 3 C -0.167 4.167 4 N -0.710 5.710 5 C 0.541 3.459 6 O -0.546 6.546 7 C -0.133 4.133 8 S -0.141 6.141 9 C -0.550 4.550 10 H 0.080 0.920 11 C 0.015 3.985 12 N -0.910 5.910 13 Si 0.997 3.003 14 H -0.262 1.262 15 H -0.278 1.278 16 H -0.263 1.263 17 C -0.139 4.139 18 C -0.041 4.041 19 C -0.151 4.151 20 C 0.126 3.874 21 F -0.135 7.135 22 C -0.194 4.194 23 C 0.130 3.870 24 F -0.135 7.135 25 H 0.094 0.906 26 H 0.054 0.946 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.408 0.592 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.271 0.729 35 H 0.173 0.827 36 H 0.172 0.828 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.006 -6.493 26.573 27.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.136 3.864 3 C -0.225 4.225 4 N -0.364 5.364 5 C 0.327 3.673 6 O -0.423 6.423 7 C -0.284 4.284 8 S 0.086 5.914 9 C -0.697 4.697 10 H 0.098 0.902 11 C -0.190 4.190 12 N -0.547 5.547 13 Si 0.818 3.182 14 H -0.186 1.186 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.141 4.141 18 C -0.059 4.059 19 C -0.169 4.169 20 C 0.107 3.893 21 F -0.114 7.114 22 C -0.214 4.214 23 C 0.110 3.890 24 F -0.114 7.114 25 H 0.113 0.887 26 H 0.073 0.927 27 H 0.093 0.907 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.243 0.757 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.080 0.920 35 H 0.191 0.809 36 H 0.190 0.810 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.832 -4.742 26.278 26.715 hybrid contribution 1.903 -1.696 -0.929 2.713 sum 2.734 -6.438 25.349 26.296 Atomic orbital electron populations 1.22311 0.92566 1.03415 1.03915 1.19046 0.95213 0.91369 0.80809 1.22288 1.01527 0.95293 1.03368 1.45992 1.54262 1.32153 1.03961 1.19869 0.79383 0.83784 0.84249 1.90642 1.38191 1.26775 1.86660 1.23403 1.04963 1.03917 0.96124 1.85465 1.69014 1.40862 0.96016 1.23183 1.37552 1.15716 0.93299 0.90161 1.26100 0.95348 0.96974 1.00607 1.70166 1.37920 1.27703 1.18882 0.85030 0.78781 0.78205 0.76148 1.18645 1.20302 1.18804 1.19966 0.91784 1.03633 0.98684 1.21224 1.01438 0.92362 0.90894 1.21525 0.93595 1.01968 0.99857 1.17506 0.92787 0.95039 0.83999 1.91540 1.90051 1.79262 1.50509 1.21136 1.02422 1.03074 0.94738 1.17321 0.86513 0.96574 0.88605 1.91530 1.68589 1.83521 1.67712 0.88741 0.92701 0.90670 0.92412 0.92420 0.89864 0.75663 0.87978 0.87504 0.91966 0.80946 0.81033 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.39 7.06 71.98 0.51 -2.89 16 2 C 0.22 4.89 0.68 2.86 0.00 4.89 16 3 C -0.17 -4.21 8.17 71.98 0.59 -3.63 16 4 N -0.71 -18.59 4.73 -426.32 -2.02 -20.61 16 5 C 0.54 19.64 7.27 87.66 0.64 20.28 16 6 O -0.55 -23.73 12.07 -3.05 -0.04 -23.76 16 7 C -0.13 -5.33 6.16 71.24 0.44 -4.89 16 8 S -0.14 -7.79 20.57 -56.49 -1.16 -8.95 16 9 C -0.55 -31.58 9.50 67.95 0.65 -30.93 16 10 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 11 C 0.01 0.83 5.49 84.86 0.47 1.30 16 12 N -0.91 -55.97 13.22 21.65 0.29 -55.68 16 13 Si 1.00 43.77 29.55 68.60 2.03 45.79 16 14 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 15 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 16 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 17 C -0.14 -2.31 4.81 -19.81 -0.10 -2.40 16 18 C -0.04 -0.45 8.97 22.25 0.20 -0.25 16 19 C -0.15 -1.46 10.02 22.32 0.22 -1.24 16 20 C 0.13 1.67 7.30 22.37 0.16 1.83 16 21 F -0.14 -1.98 17.27 44.97 0.78 -1.21 16 22 C -0.19 -2.86 10.01 22.36 0.22 -2.64 16 23 C 0.13 2.30 6.75 22.37 0.15 2.45 16 24 F -0.14 -2.97 14.70 44.97 0.66 -2.31 16 25 H 0.09 1.37 7.58 -2.38 -0.02 1.35 16 26 H 0.05 1.60 6.17 -2.39 -0.01 1.58 16 27 H 0.07 1.31 7.44 -2.39 -0.02 1.29 16 28 H 0.06 1.50 6.19 -2.39 -0.01 1.49 16 29 H 0.06 1.87 6.16 -2.38 -0.01 1.85 16 30 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.41 8.86 8.30 -92.71 -0.77 8.09 16 32 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 33 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 34 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 35 H 0.17 1.19 5.89 -2.91 -0.02 1.17 16 36 H 0.17 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 Total: -1.00 -73.74 330.03 5.04 -68.69 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.36 Total: 16.15 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 4.15 Total: -18.11 kcal Atomic # 7 Polarization: -74.56 SS G_CDS: -1.73 Total: -76.29 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.04 Total: -23.76 kcal Atomic # 9 Polarization: -4.96 SS G_CDS: 1.44 Total: -3.52 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -7.79 SS G_CDS: -1.16 Total: -8.95 kcal Total: -73.74 5.04 -68.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894772088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.485 kcal (2) G-P(sol) polarization free energy of solvation -73.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds