Wall clock time and date at job start Tue Mar 31 2020 11:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35993 * 117.00084 * 2 1 4 4 C 1.38559 * 120.07187 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99859 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14866 * 359.74089 * 5 4 3 7 7 C 1.38242 * 120.14215 * 0.51258 * 6 5 4 8 8 S 1.76198 * 119.99754 * 179.76609 * 7 6 5 9 9 O 1.42094 * 106.40529 * 358.38143 * 8 7 6 10 10 O 1.42105 * 106.40014 * 131.30239 * 8 7 6 11 11 N 1.65603 * 107.22058 * 244.83764 * 8 7 6 12 12 C 1.46507 * 119.99506 * 65.47376 * 11 8 7 13 13 H 1.08994 * 109.47199 * 24.88438 * 12 11 8 14 14 C 1.52992 * 109.47281 * 264.88150 * 12 11 8 15 15 C 1.50704 * 109.46708 * 144.88029 * 12 11 8 16 16 H 1.07992 * 120.00128 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99563 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00386 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99711 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.46758 * 90.00263 * 19 17 15 21 21 H 1.48497 * 109.46984 * 210.00392 * 19 17 15 22 22 H 1.48504 * 109.47142 * 330.00661 * 19 17 15 23 23 C 1.38563 * 120.00053 * 359.49193 * 7 6 5 24 24 O 1.35990 * 120.07269 * 180.23413 * 23 7 6 25 25 C 1.42898 * 117.00224 * 96.98937 * 24 23 7 26 26 H 1.09000 * 109.47138 * 299.99618 * 1 2 3 27 27 H 1.08999 * 109.46756 * 59.99969 * 1 2 3 28 28 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00424 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.92799 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.93178 * 180.25259 * 6 5 4 32 32 H 0.96994 * 120.00462 * 245.47911 * 11 8 7 33 33 H 1.09000 * 109.47333 * 184.85764 * 14 12 11 34 34 H 1.09005 * 109.47493 * 304.85409 * 14 12 11 35 35 H 1.09003 * 109.47374 * 64.85339 * 14 12 11 36 36 H 0.96992 * 120.00323 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47604 * 55.37544 * 25 24 23 38 38 H 1.09007 * 109.47377 * 175.37351 * 25 24 23 39 39 H 1.09000 * 109.47198 * 295.37000 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9224 3.6056 -0.0011 6 6 3.3030 3.6798 0.0043 7 6 4.0603 2.5233 -0.0004 8 16 5.8195 2.6223 0.0003 9 8 6.1437 4.0054 -0.0324 10 8 6.2705 1.7422 1.0208 11 7 6.3470 1.9843 -1.4340 12 6 6.0231 2.6535 -2.6964 13 1 5.8442 3.7126 -2.5108 14 6 4.7673 2.0224 -3.3007 15 6 7.1746 2.4993 -3.6564 16 1 8.0588 1.9568 -3.3564 17 6 7.0985 3.0500 -4.9182 18 7 6.0215 3.7103 -5.2837 19 14 8.5260 2.8595 -6.1080 20 1 8.3420 1.6218 -6.9075 21 1 8.5733 4.0333 -7.0163 22 1 9.7975 2.7719 -5.3457 23 6 3.4360 1.2863 0.0001 24 8 4.1796 0.1477 0.0002 25 6 4.4048 -0.4799 1.2641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2146 2.3196 -0.0014 30 1 1.3343 4.5114 -0.0019 31 1 3.7909 4.6433 0.0080 32 1 6.8703 1.1677 -1.4383 33 1 4.5755 2.4607 -4.2801 34 1 4.9155 0.9477 -3.4064 35 1 3.9159 2.2090 -2.6461 36 1 5.9681 4.0980 -6.1712 37 1 3.4480 -0.6805 1.7459 38 1 4.9396 -1.4179 1.1139 39 1 4.9990 0.1797 1.8965 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906888081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:11 Heat of formation + Delta-G solvation = -114.931083 kcal Electronic energy + Delta-G solvation = -25673.698725 eV Core-core repulsion = 21902.884460 eV Total energy + Delta-G solvation = -3770.814265 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53749 -38.21165 -37.12285 -36.40236 -35.34889 -35.26540 -32.12304 -30.79571 -30.12599 -28.20523 -27.56461 -26.61844 -25.17599 -22.97047 -22.38051 -20.84837 -19.27215 -18.37503 -17.44928 -17.19776 -16.86823 -16.21256 -16.06878 -15.69296 -15.21774 -15.10921 -14.80401 -14.60093 -14.45360 -13.62162 -13.33812 -12.96291 -12.69060 -12.58718 -12.21071 -12.12211 -11.82280 -11.68302 -11.50599 -11.40028 -11.38824 -11.30045 -11.04714 -10.93628 -10.65156 -10.48700 -10.26455 -10.03765 -9.89578 -9.25252 -9.09770 -8.56309 -8.21144 -8.18150 -6.06848 -4.13780 0.70638 1.11812 1.25671 3.07043 3.29693 3.30411 3.36815 3.40731 3.69712 3.88261 4.29725 4.41584 4.65735 4.80488 4.91359 4.94438 5.02097 5.17698 5.25459 5.27229 5.44427 5.49681 5.53868 5.65257 5.97367 6.01815 6.08464 6.23328 6.44388 6.48282 6.86125 6.96716 7.01111 7.10653 7.56335 7.65106 7.75913 7.94981 8.08619 8.34956 8.88979 9.51510 10.99123 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.004951 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.644736 B = 5653.798020 C = 6065.348047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.306 6.306 3 C 0.081 3.919 4 C -0.151 4.151 5 C -0.109 4.109 6 C -0.043 4.043 7 C -0.650 4.650 8 S 2.695 3.305 9 O -0.961 6.961 10 O -0.976 6.976 11 N -1.088 6.088 12 C 0.269 3.731 13 H 0.050 0.950 14 C -0.156 4.156 15 C -0.517 4.517 16 H 0.065 0.935 17 C 0.063 3.937 18 N -0.889 5.889 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.273 1.273 23 C 0.175 3.825 24 O -0.324 6.324 25 C 0.031 3.969 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.136 0.864 31 H 0.150 0.850 32 H 0.411 0.589 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.010 0.990 36 H 0.263 0.737 37 H 0.042 0.958 38 H 0.095 0.905 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.948 -4.909 11.501 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.035 3.965 4 C -0.170 4.170 5 C -0.128 4.128 6 C -0.063 4.063 7 C -0.734 4.734 8 S 2.781 3.219 9 O -0.951 6.951 10 O -0.966 6.966 11 N -0.850 5.850 12 C 0.165 3.835 13 H 0.068 0.932 14 C -0.215 4.215 15 C -0.557 4.557 16 H 0.083 0.917 17 C -0.140 4.140 18 N -0.528 5.528 19 Si 0.729 3.271 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.198 1.198 23 C 0.129 3.871 24 O -0.241 6.241 25 C -0.063 4.063 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.245 0.755 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.114 0.886 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.493 -4.583 11.869 17.145 hybrid contribution -0.405 -0.459 -0.964 1.142 sum -11.897 -5.042 10.905 16.908 Atomic orbital electron populations 1.23089 0.78681 1.04044 1.01230 1.86171 1.21016 1.25868 1.88890 1.19400 0.91698 0.85117 1.00290 1.21371 1.00105 0.92111 1.03396 1.21068 0.94583 0.97261 0.99848 1.20865 0.93906 0.97314 0.94168 1.31469 1.29321 0.97290 1.15294 1.01764 0.73103 0.73750 0.73243 1.93564 1.81645 1.33039 1.86861 1.93484 1.79904 1.66415 1.56798 1.55367 1.66892 1.40361 1.22375 1.18619 0.94137 0.91801 0.78953 0.93210 1.22250 0.96283 0.99876 1.03138 1.21228 1.01455 1.35336 0.97662 0.91688 1.24913 0.96213 0.94854 0.97977 1.69865 1.27233 1.35486 1.20192 0.86445 0.82452 0.77567 0.80627 1.20649 1.21151 1.19762 1.17253 0.86474 0.85497 0.97860 1.86062 1.70245 1.36646 1.31136 1.23229 1.00413 0.98446 0.84201 0.92831 0.92506 0.88125 0.84666 0.84637 0.83275 0.75453 0.88819 0.94712 0.97091 0.92664 0.93952 0.88628 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -4.19 10.28 -34.22 -0.35 -4.54 16 3 C 0.08 1.23 6.70 -39.12 -0.26 0.97 16 4 C -0.15 -1.90 9.04 -39.46 -0.36 -2.26 16 5 C -0.11 -1.41 10.04 -39.57 -0.40 -1.81 16 6 C -0.04 -0.69 9.54 -39.57 -0.38 -1.06 16 7 C -0.65 -11.68 4.92 -39.46 -0.19 -11.87 16 8 S 2.70 53.72 5.31 -107.50 -0.57 53.15 16 9 O -0.96 -21.45 16.28 -57.17 -0.93 -22.38 16 10 O -0.98 -19.33 15.07 -62.56 -0.94 -20.27 16 11 N -1.09 -23.26 5.46 -5.88 -0.03 -23.29 16 12 C 0.27 6.70 2.90 -69.08 -0.20 6.50 16 13 H 0.05 1.35 7.49 -51.93 -0.39 0.96 16 14 C -0.16 -3.74 9.35 37.15 0.35 -3.40 16 15 C -0.52 -13.90 8.76 -34.44 -0.30 -14.20 16 16 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 17 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 18 N -0.89 -24.75 11.29 55.43 0.63 -24.12 16 19 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 20 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 C 0.18 3.06 5.52 -39.12 -0.22 2.84 16 24 O -0.32 -5.69 9.24 -42.95 -0.40 -6.09 16 25 C 0.03 0.44 10.66 101.05 1.08 1.52 16 26 H 0.05 0.37 7.67 -51.93 -0.40 -0.03 16 27 H 0.06 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.14 1.22 6.30 -52.48 -0.33 0.89 16 30 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 31 H 0.15 2.25 7.33 -52.49 -0.38 1.86 16 32 H 0.41 8.09 8.83 -34.48 -0.30 7.79 16 33 H 0.09 2.45 5.95 -51.93 -0.31 2.14 16 34 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.01 0.23 6.95 -51.93 -0.36 -0.13 16 36 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 37 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.07 1.12 6.22 -51.93 -0.32 0.80 16 LS Contribution 337.47 15.07 5.09 5.09 Total: -1.00 -32.72 337.47 -7.37 -40.09 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -4.86 Total: 6.39 kcal Atomic # 6 Polarization: -19.99 SS G_CDS: 0.02 Total: -19.97 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: 0.59 Total: -47.41 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -2.62 Total: -53.28 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 16 Polarization: 53.72 SS G_CDS: -0.57 Total: 53.15 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.72 -7.37 -40.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906888081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.837 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds