Wall clock time and date at job start Tue Mar 31 2020 11:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35993 * 117.00084 * 2 1 4 4 C 1.38559 * 120.07187 * 359.97438 * 3 2 1 5 5 C 1.38241 * 119.99859 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.14866 * 359.74089 * 5 4 3 7 7 C 1.38242 * 120.14215 * 0.51258 * 6 5 4 8 8 S 1.76198 * 119.99754 * 179.76609 * 7 6 5 9 9 O 1.42094 * 106.40529 * 358.38143 * 8 7 6 10 10 O 1.42105 * 106.40014 * 131.30239 * 8 7 6 11 11 N 1.65603 * 107.22058 * 244.83764 * 8 7 6 12 12 C 1.46507 * 119.99506 * 65.47376 * 11 8 7 13 13 H 1.08994 * 109.47199 * 24.88438 * 12 11 8 14 14 C 1.52992 * 109.47281 * 264.88150 * 12 11 8 15 15 C 1.50704 * 109.46708 * 144.88029 * 12 11 8 16 16 H 1.07992 * 120.00128 * 0.02562 * 15 12 11 17 17 C 1.37878 * 119.99563 * 179.97438 * 15 12 11 18 18 N 1.31513 * 120.00386 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 119.99711 * 179.97438 * 17 15 12 20 20 H 1.48499 * 109.46758 * 90.00263 * 19 17 15 21 21 H 1.48497 * 109.46984 * 210.00392 * 19 17 15 22 22 H 1.48504 * 109.47142 * 330.00661 * 19 17 15 23 23 C 1.38563 * 120.00053 * 359.49193 * 7 6 5 24 24 O 1.35990 * 120.07269 * 180.23413 * 23 7 6 25 25 C 1.42898 * 117.00224 * 96.98937 * 24 23 7 26 26 H 1.09000 * 109.47138 * 299.99618 * 1 2 3 27 27 H 1.08999 * 109.46756 * 59.99969 * 1 2 3 28 28 H 1.09004 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.08003 * 120.00424 * 359.97438 * 4 3 2 30 30 H 1.07998 * 119.92799 * 179.97438 * 5 4 3 31 31 H 1.07997 * 119.93178 * 180.25259 * 6 5 4 32 32 H 0.96994 * 120.00462 * 245.47911 * 11 8 7 33 33 H 1.09000 * 109.47333 * 184.85764 * 14 12 11 34 34 H 1.09005 * 109.47493 * 304.85409 * 14 12 11 35 35 H 1.09003 * 109.47374 * 64.85339 * 14 12 11 36 36 H 0.96992 * 120.00323 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47604 * 55.37544 * 25 24 23 38 38 H 1.09007 * 109.47377 * 175.37351 * 25 24 23 39 39 H 1.09000 * 109.47198 * 295.37000 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3747 -0.0005 5 6 1.9224 3.6056 -0.0011 6 6 3.3030 3.6798 0.0043 7 6 4.0603 2.5233 -0.0004 8 16 5.8195 2.6223 0.0003 9 8 6.1437 4.0054 -0.0324 10 8 6.2705 1.7422 1.0208 11 7 6.3470 1.9843 -1.4340 12 6 6.0231 2.6535 -2.6964 13 1 5.8442 3.7126 -2.5108 14 6 4.7673 2.0224 -3.3007 15 6 7.1746 2.4993 -3.6564 16 1 8.0588 1.9568 -3.3564 17 6 7.0985 3.0500 -4.9182 18 7 6.0215 3.7103 -5.2837 19 14 8.5260 2.8595 -6.1080 20 1 8.3420 1.6218 -6.9075 21 1 8.5733 4.0333 -7.0163 22 1 9.7975 2.7719 -5.3457 23 6 3.4360 1.2863 0.0001 24 8 4.1796 0.1477 0.0002 25 6 4.4048 -0.4799 1.2641 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 0.2146 2.3196 -0.0014 30 1 1.3343 4.5114 -0.0019 31 1 3.7909 4.6433 0.0080 32 1 6.8703 1.1677 -1.4383 33 1 4.5755 2.4607 -4.2801 34 1 4.9155 0.9477 -3.4064 35 1 3.9159 2.2090 -2.6461 36 1 5.9681 4.0980 -6.1712 37 1 3.4480 -0.6805 1.7459 38 1 4.9396 -1.4179 1.1139 39 1 4.9990 0.1797 1.8965 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906888081.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:11 Heat of formation + Delta-G solvation = -138.857039 kcal Electronic energy + Delta-G solvation = -25674.736233 eV Core-core repulsion = 21902.884460 eV Total energy + Delta-G solvation = -3771.851772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.61902 -39.30453 -38.43836 -37.82571 -37.23437 -36.91284 -34.11009 -31.94174 -31.18046 -30.10347 -28.37044 -27.70610 -27.23187 -24.12073 -23.51122 -22.77423 -20.64669 -19.76437 -19.14513 -18.39176 -18.18440 -17.68449 -17.27041 -17.05321 -16.94977 -16.27291 -16.19839 -15.80983 -15.56116 -15.37669 -14.54775 -14.46062 -14.03099 -13.97508 -13.74661 -13.50913 -13.42020 -13.13693 -13.00038 -12.94227 -12.80446 -12.73200 -12.45598 -12.36245 -12.22877 -12.16701 -11.99486 -11.83676 -11.15147 -11.06878 -10.57202 -10.37220 -10.04567 -9.28551 -8.12394 -6.26582 -0.59140 -0.31849 0.13586 1.46691 1.47470 1.57947 2.02999 2.14877 2.32102 2.46765 2.64800 2.79558 3.16869 3.49730 3.78202 3.85781 4.05153 4.27475 4.33100 4.38677 4.41366 4.42597 4.54595 4.57003 4.72154 4.85091 4.88735 4.94721 4.99599 5.03413 5.14432 5.15894 5.44178 5.60024 5.77078 6.01620 6.03447 6.13521 6.43365 6.45710 6.83215 7.42258 8.93149 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.016336 B = 0.004951 C = 0.004615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.644736 B = 5653.798020 C = 6065.348047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.076 3.924 4 C -0.137 4.137 5 C -0.099 4.099 6 C -0.064 4.064 7 C -0.667 4.667 8 S 2.705 3.295 9 O -0.993 6.993 10 O -0.980 6.980 11 N -1.093 6.093 12 C 0.276 3.724 13 H 0.022 0.978 14 C -0.140 4.140 15 C -0.541 4.541 16 H 0.065 0.935 17 C 0.017 3.983 18 N -0.914 5.914 19 Si 0.964 3.036 20 H -0.273 1.273 21 H -0.282 1.282 22 H -0.270 1.270 23 C 0.149 3.851 24 O -0.345 6.345 25 C 0.026 3.974 26 H 0.075 0.925 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.179 0.821 30 H 0.176 0.824 31 H 0.147 0.853 32 H 0.416 0.584 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.024 0.976 36 H 0.266 0.734 37 H 0.058 0.942 38 H 0.114 0.886 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.048 -5.458 11.623 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.029 3.971 4 C -0.155 4.155 5 C -0.117 4.117 6 C -0.084 4.084 7 C -0.755 4.755 8 S 2.796 3.204 9 O -0.984 6.984 10 O -0.970 6.970 11 N -0.853 5.853 12 C 0.171 3.829 13 H 0.040 0.960 14 C -0.199 4.199 15 C -0.580 4.580 16 H 0.083 0.917 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.789 3.211 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.195 1.195 23 C 0.103 3.897 24 O -0.262 6.262 25 C -0.067 4.067 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.196 0.804 30 H 0.194 0.806 31 H 0.165 0.835 32 H 0.251 0.749 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.043 0.957 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.132 0.868 39 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.549 -5.147 12.002 18.817 hybrid contribution 0.075 -0.328 -0.908 0.968 sum -13.474 -5.474 11.094 18.292 Atomic orbital electron populations 1.23478 0.75959 1.06014 1.02719 1.86152 1.23801 1.25307 1.88614 1.19500 0.91116 0.86613 0.99823 1.21882 1.02137 0.90848 1.00682 1.21522 0.93374 0.99205 0.97616 1.21096 0.95615 0.96570 0.95083 1.30954 1.27247 0.98791 1.18510 1.01104 0.74019 0.72731 0.72535 1.93514 1.83074 1.34700 1.87086 1.93472 1.80893 1.66236 1.56410 1.55210 1.67974 1.40339 1.21822 1.18298 0.94095 0.90624 0.79929 0.96047 1.22034 0.96447 0.99387 1.02068 1.21580 1.02188 1.35680 0.98568 0.91665 1.25694 0.98616 0.94474 0.99530 1.69977 1.28729 1.35916 1.20651 0.85465 0.79419 0.77726 0.78453 1.19823 1.20767 1.19464 1.17470 0.87850 0.85059 0.99320 1.86023 1.70718 1.36904 1.32532 1.23376 1.01329 0.98657 0.83357 0.90672 0.91482 0.86192 0.80363 0.80616 0.83490 0.74879 0.90948 0.94691 0.95686 0.92474 0.92358 0.86793 0.92099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.16 9.81 113.37 1.11 1.27 16 2 O -0.32 -8.07 10.28 -79.61 -0.82 -8.89 16 3 C 0.08 2.14 6.70 22.57 0.15 2.29 16 4 C -0.14 -2.94 9.04 22.35 0.20 -2.74 16 5 C -0.10 -2.25 10.04 22.27 0.22 -2.03 16 6 C -0.06 -1.99 9.54 22.27 0.21 -1.78 16 7 C -0.67 -24.09 4.92 22.35 0.11 -23.98 16 8 S 2.71 111.47 5.31 -56.49 -0.30 111.17 16 9 O -0.99 -46.25 16.28 -128.00 -2.08 -48.33 16 10 O -0.98 -39.94 15.07 -122.85 -1.85 -41.79 16 11 N -1.09 -48.25 5.46 -172.52 -0.94 -49.19 16 12 C 0.28 14.13 2.90 44.24 0.13 14.26 16 13 H 0.02 1.22 7.49 -2.39 -0.02 1.21 16 14 C -0.14 -6.82 9.35 71.98 0.67 -6.15 16 15 C -0.54 -29.61 8.76 25.60 0.22 -29.39 16 16 H 0.07 3.47 7.81 -2.91 -0.02 3.44 16 17 C 0.02 0.92 5.29 84.66 0.45 1.37 16 18 N -0.91 -51.47 11.29 21.45 0.24 -51.23 16 19 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 20 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 21 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.15 5.12 5.52 22.57 0.12 5.25 16 24 O -0.34 -12.09 9.24 -71.22 -0.66 -12.75 16 25 C 0.03 0.74 10.66 113.37 1.21 1.94 16 26 H 0.07 0.68 7.67 -2.39 -0.02 0.66 16 27 H 0.07 0.76 7.66 -2.39 -0.02 0.75 16 28 H 0.12 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.18 2.21 6.30 -2.91 -0.02 2.19 16 30 H 0.18 2.54 8.06 -2.91 -0.02 2.51 16 31 H 0.15 4.50 7.33 -2.91 -0.02 4.48 16 32 H 0.42 16.97 8.83 -96.75 -0.85 16.12 16 33 H 0.07 3.85 5.95 -2.39 -0.01 3.83 16 34 H 0.03 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.02 1.10 6.95 -2.39 -0.02 1.08 16 36 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 37 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 39 H 0.06 1.85 6.22 -2.39 -0.01 1.84 16 Total: -1.00 -71.88 337.47 0.66 -71.21 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.23 Total: 24.36 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.82 Total: -39.68 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -0.70 Total: -100.42 kcal Atomic # 8 Polarization: -106.34 SS G_CDS: -5.41 Total: -111.75 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 111.47 SS G_CDS: -0.30 Total: 111.17 kcal Total: -71.88 0.66 -71.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906888081.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.645 kcal (2) G-P(sol) polarization free energy of solvation -71.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds