Wall clock time and date at job start Tue Mar 31 2020 11:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 116.99890 * 2 1 4 4 C 1.38559 * 120.07314 * 0.02562 * 3 2 1 5 5 C 1.38243 * 120.00092 * 179.97438 * 4 3 2 6 6 C 1.38256 * 120.14729 * 0.02562 * 5 4 3 7 7 C 1.38244 * 120.14128 * 359.95384 * 6 5 4 8 8 S 1.76201 * 119.99398 * 180.02562 * 7 6 5 9 9 O 1.42109 * 106.40173 * 130.57819 * 8 7 6 10 10 O 1.42088 * 106.40401 * 357.65589 * 8 7 6 11 11 N 1.65604 * 107.21552 * 244.11127 * 8 7 6 12 12 C 1.46503 * 119.99523 * 64.65817 * 11 8 7 13 13 H 1.09001 * 109.47035 * 335.90136 * 12 11 8 14 14 C 1.53003 * 109.47005 * 95.90341 * 12 11 8 15 15 C 1.50703 * 109.47014 * 215.89931 * 12 11 8 16 16 H 1.07995 * 119.99785 * 0.02562 * 15 12 11 17 17 C 1.37871 * 119.99935 * 179.97438 * 15 12 11 18 18 N 1.31516 * 120.00365 * 0.02562 * 17 15 12 19 19 Si 1.86804 * 120.00008 * 180.02562 * 17 15 12 20 20 H 1.48498 * 109.46868 * 59.99995 * 19 17 15 21 21 H 1.48502 * 109.47109 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47208 * 300.00129 * 19 17 15 23 23 C 1.38561 * 120.00150 * 0.27673 * 7 6 5 24 24 O 1.35999 * 120.07257 * 179.74766 * 23 7 6 25 25 C 1.42900 * 116.99867 * 96.31267 * 24 23 7 26 26 H 1.08997 * 109.46782 * 299.99371 * 1 2 3 27 27 H 1.08995 * 109.47313 * 59.99730 * 1 2 3 28 28 H 1.08999 * 109.46754 * 179.97438 * 1 2 3 29 29 H 1.08002 * 120.00193 * 359.96967 * 4 3 2 30 30 H 1.08001 * 119.92837 * 179.97438 * 5 4 3 31 31 H 1.07998 * 119.92651 * 179.97438 * 6 5 4 32 32 H 0.96991 * 120.00460 * 244.65640 * 11 8 7 33 33 H 1.09004 * 109.46878 * 180.02562 * 14 12 11 34 34 H 1.08992 * 109.47239 * 59.99931 * 14 12 11 35 35 H 1.09000 * 109.46927 * 299.99124 * 14 12 11 36 36 H 0.97003 * 120.00512 * 179.97438 * 18 17 15 37 37 H 1.09003 * 109.47299 * 185.95979 * 25 24 23 38 38 H 1.09001 * 109.47622 * 305.96360 * 25 24 23 39 39 H 1.09002 * 109.46761 * 65.96022 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6799 0.0005 7 6 4.0603 2.5234 0.0004 8 16 5.8195 2.6225 0.0004 9 8 6.2700 1.7595 1.0358 10 8 6.1435 4.0048 -0.0552 11 7 6.3477 1.9606 -1.4227 12 6 6.0093 2.5987 -2.6973 13 1 5.1050 3.1951 -2.5763 14 6 7.1622 3.5036 -3.1365 15 6 5.7760 1.5390 -3.7432 16 1 5.8700 0.4948 -3.4843 17 6 5.4416 1.9027 -5.0304 18 7 5.3267 3.1743 -5.3457 19 14 5.1517 0.5892 -6.3267 20 1 4.0329 -0.2890 -5.8998 21 1 4.8089 1.2360 -7.6187 22 1 6.3836 -0.2234 -6.4920 23 6 3.4360 1.2864 -0.0049 24 8 4.1796 0.1477 -0.0102 25 6 4.4174 -0.4776 1.2525 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2146 2.3196 0.0005 30 1 1.3342 4.5115 0.0011 31 1 3.7907 4.6435 0.0005 32 1 6.8810 1.1505 -1.4124 33 1 6.9102 3.9787 -4.0847 34 1 8.0664 2.9072 -3.2576 35 1 7.3308 4.2701 -2.3801 36 1 5.0918 3.4302 -6.2514 37 1 5.1073 -1.3113 1.1209 38 1 4.8509 0.2475 1.9412 39 1 3.4754 -0.8462 1.6585 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906888082.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:14 Heat of formation + Delta-G solvation = -115.590361 kcal Electronic energy + Delta-G solvation = -25721.150837 eV Core-core repulsion = 21950.307984 eV Total energy + Delta-G solvation = -3770.842853 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45975 -38.14418 -37.06694 -36.39736 -35.32894 -35.26865 -32.11362 -30.73000 -30.06741 -28.19588 -27.48979 -26.56620 -25.13793 -22.92502 -22.32448 -20.86256 -19.25690 -18.32084 -17.41980 -17.13092 -16.81853 -16.10761 -15.96404 -15.80780 -15.16944 -15.09032 -14.74621 -14.57200 -14.41382 -13.58832 -13.31979 -12.93746 -12.59490 -12.54839 -12.17756 -12.10823 -11.75303 -11.64185 -11.55055 -11.39877 -11.31504 -11.21435 -11.07899 -10.91858 -10.57414 -10.54023 -10.22303 -10.03024 -9.85047 -9.18009 -9.12423 -8.54170 -8.21658 -8.12028 -6.06428 -4.13220 0.76240 1.14187 1.32366 3.13898 3.30907 3.34641 3.36085 3.38530 3.71347 3.91135 4.30538 4.41137 4.71596 4.86934 4.95971 5.00596 5.07875 5.22587 5.25339 5.33640 5.49555 5.55853 5.59847 5.68096 5.98308 6.07577 6.11343 6.28660 6.42615 6.54076 6.89665 7.08245 7.10990 7.15773 7.63580 7.65962 7.77311 7.92417 8.10845 8.35889 8.90419 9.52398 10.99393 Molecular weight = 315.10amu Principal moments of inertia in cm(-1) A = 0.011469 B = 0.006517 C = 0.005273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.751723 B = 4295.732907 C = 5308.526030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.083 3.917 4 C -0.150 4.150 5 C -0.110 4.110 6 C -0.044 4.044 7 C -0.651 4.651 8 S 2.696 3.304 9 O -0.977 6.977 10 O -0.963 6.963 11 N -1.089 6.089 12 C 0.276 3.724 13 H 0.039 0.961 14 C -0.157 4.157 15 C -0.520 4.520 16 H 0.065 0.935 17 C 0.064 3.936 18 N -0.889 5.889 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.179 3.821 24 O -0.322 6.322 25 C 0.034 3.966 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.135 0.865 31 H 0.149 0.851 32 H 0.411 0.589 33 H 0.092 0.908 34 H 0.032 0.968 35 H 0.024 0.976 36 H 0.264 0.736 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.963 -2.799 11.823 15.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.219 6.219 3 C 0.036 3.964 4 C -0.169 4.169 5 C -0.129 4.129 6 C -0.064 4.064 7 C -0.735 4.735 8 S 2.783 3.217 9 O -0.967 6.967 10 O -0.953 6.953 11 N -0.851 5.851 12 C 0.172 3.828 13 H 0.057 0.943 14 C -0.217 4.217 15 C -0.559 4.559 16 H 0.083 0.917 17 C -0.139 4.139 18 N -0.528 5.528 19 Si 0.726 3.274 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C 0.133 3.867 24 O -0.238 6.238 25 C -0.060 4.060 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.119 0.881 29 H 0.153 0.847 30 H 0.153 0.847 31 H 0.167 0.833 32 H 0.245 0.755 33 H 0.110 0.890 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.087 0.913 39 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -8.481 -2.450 12.172 15.036 hybrid contribution -1.252 -1.047 -1.053 1.942 sum -9.733 -3.497 11.119 15.185 Atomic orbital electron populations 1.23086 0.78726 1.04029 1.01206 1.86175 1.20988 1.25852 1.88858 1.19401 0.91719 0.85123 1.00125 1.21367 1.00099 0.92121 1.03326 1.21051 0.94576 0.97241 0.99991 1.20842 0.93943 0.97216 0.94353 1.31384 1.29116 0.97348 1.15646 1.01738 0.73128 0.73717 0.73133 1.93494 1.79986 1.67264 1.55982 1.93555 1.81741 1.33138 1.86907 1.55394 1.66337 1.41314 1.22034 1.18504 0.93637 0.91903 0.78742 0.94324 1.22229 0.98374 0.98527 1.02526 1.21285 1.47640 0.93047 0.93956 0.91658 1.24899 0.95113 0.95517 0.98341 1.69873 1.47878 1.15033 1.20001 0.86561 0.78809 0.81607 0.80452 1.20244 1.21284 1.20135 1.17262 0.86538 0.85495 0.97430 1.86107 1.70167 1.36699 1.30825 1.23171 1.00356 0.98176 0.84327 0.92852 0.92496 0.88143 0.84663 0.84669 0.83345 0.75486 0.88995 0.94850 0.95666 0.92653 0.88521 0.91349 0.93890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 101.05 0.99 1.23 16 2 O -0.31 -4.53 10.28 -34.23 -0.35 -4.88 16 3 C 0.08 1.35 6.70 -39.12 -0.26 1.08 16 4 C -0.15 -2.04 9.04 -39.46 -0.36 -2.40 16 5 C -0.11 -1.51 10.04 -39.57 -0.40 -1.90 16 6 C -0.04 -0.73 9.54 -39.57 -0.38 -1.11 16 7 C -0.65 -12.19 5.73 -39.46 -0.23 -12.42 16 8 S 2.70 53.63 5.20 -107.50 -0.56 53.07 16 9 O -0.98 -19.35 15.26 -62.09 -0.95 -20.30 16 10 O -0.96 -20.81 16.33 -57.17 -0.93 -21.74 16 11 N -1.09 -23.22 5.46 -5.88 -0.03 -23.26 16 12 C 0.28 6.87 2.77 -69.08 -0.19 6.68 16 13 H 0.04 1.02 7.83 -51.93 -0.41 0.62 16 14 C -0.16 -3.85 9.29 37.16 0.35 -3.50 16 15 C -0.52 -13.91 8.76 -34.44 -0.30 -14.21 16 16 H 0.07 1.72 7.81 -52.49 -0.41 1.31 16 17 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 18 N -0.89 -24.74 11.32 55.43 0.63 -24.11 16 19 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 C 0.18 3.33 5.69 -39.12 -0.22 3.11 16 24 O -0.32 -6.01 9.28 -42.27 -0.39 -6.40 16 25 C 0.03 0.50 10.48 101.05 1.06 1.56 16 26 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 27 H 0.06 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.14 1.34 6.30 -52.49 -0.33 1.01 16 30 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.15 2.27 7.33 -52.49 -0.38 1.89 16 32 H 0.41 8.06 8.84 -34.48 -0.30 7.76 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 34 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.02 0.58 7.74 -51.93 -0.40 0.17 16 36 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 38 H 0.07 1.05 6.55 -51.93 -0.34 0.71 16 39 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 339.87 15.07 5.12 5.12 Total: -1.00 -32.70 339.87 -7.46 -40.16 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -4.94 Total: 6.54 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: -0.03 Total: -20.25 kcal Atomic # 7 Polarization: -47.97 SS G_CDS: 0.60 Total: -47.37 kcal Atomic # 8 Polarization: -50.70 SS G_CDS: -2.63 Total: -53.33 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.56 Total: 53.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.70 -7.46 -40.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906888082.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.433 kcal (2) G-P(sol) polarization free energy of solvation -32.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds