Wall clock time and date at job start Tue Mar 31 2020 10:27:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86799 * 120.00316 * 2 1 4 4 H 1.48494 * 109.47160 * 276.28173 * 3 2 1 5 5 H 1.48507 * 109.46732 * 36.27885 * 3 2 1 6 6 H 1.48500 * 109.47475 * 156.27694 * 3 2 1 7 7 C 1.38976 * 119.99920 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00059 * 352.78989 * 7 2 1 9 9 N 1.36973 * 119.99780 * 172.78347 * 7 2 1 10 10 C 1.34775 * 120.00409 * 303.05752 * 9 7 2 11 11 O 1.21659 * 120.00354 * 183.46195 * 10 9 7 12 12 C 1.47114 * 119.99475 * 3.46015 * 10 9 7 13 13 C 1.44439 * 123.47457 * 333.47635 * 12 10 9 14 14 C 1.32763 * 113.09019 * 179.76404 * 13 12 10 15 15 S 1.75504 * 110.58973 * 0.49058 * 14 13 12 16 16 C 1.36104 * 123.46675 * 153.77663 * 12 10 9 17 17 C 1.50691 * 124.59856 * 359.96080 * 16 12 10 18 18 F 1.39903 * 109.47369 * 300.00711 * 17 16 12 19 19 F 1.39905 * 109.47153 * 60.00120 * 17 16 12 20 20 C 1.46500 * 119.99717 * 123.05735 * 9 7 2 21 21 C 1.55235 * 110.46879 * 50.53079 * 20 9 7 22 22 C 1.54886 * 102.58896 * 203.39153 * 21 20 9 23 23 C 1.54268 * 104.31055 * 37.93073 * 22 21 20 24 24 C 1.53866 * 106.60126 * 336.32371 * 23 22 21 25 25 H 0.97000 * 119.99838 * 359.97438 * 1 2 3 26 26 H 1.08002 * 123.45541 * 359.97438 * 13 12 10 27 27 H 1.07993 * 124.70660 * 180.17534 * 14 13 12 28 28 H 1.08993 * 109.47374 * 180.02562 * 17 16 12 29 29 H 1.09004 * 110.43184 * 173.17849 * 20 9 7 30 30 H 1.09002 * 110.89900 * 85.10047 * 21 20 9 31 31 H 1.08998 * 110.76808 * 321.62263 * 21 20 9 32 32 H 1.09004 * 110.49128 * 279.19309 * 22 21 20 33 33 H 1.08998 * 110.48887 * 156.67464 * 22 21 20 34 34 H 1.09002 * 110.03252 * 95.61285 * 23 22 21 35 35 H 1.09002 * 110.03362 * 216.98746 * 23 22 21 36 36 H 1.09000 * 110.03465 * 119.28493 * 24 23 22 37 37 H 1.09006 * 110.03708 * 240.66972 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3631 2.1229 -1.3916 5 1 1.5182 2.6107 0.8285 6 1 3.6058 1.4055 0.5633 7 6 2.0090 -1.2036 0.0005 8 1 1.4755 -2.1351 0.1183 9 7 3.3706 -1.2083 -0.1485 10 6 3.9319 -0.6371 -1.2325 11 8 5.1360 -0.6963 -1.3965 12 6 3.0886 0.0578 -2.2174 13 6 1.6970 -0.2590 -2.4394 14 6 1.1327 0.4989 -3.3720 15 16 2.2972 1.6336 -4.0330 16 6 3.5409 1.0617 -3.0175 17 6 4.9500 1.5957 -3.0064 18 9 5.2487 2.0973 -1.7350 19 9 5.8418 0.5651 -3.3223 20 6 4.2168 -1.8343 0.8705 21 6 3.7141 -3.2684 1.1875 22 6 4.2720 -3.5148 2.6112 23 6 4.1265 -2.1517 3.3189 24 6 4.0914 -1.0833 2.2122 25 1 -0.4850 0.8401 0.0004 26 1 1.1686 -1.0310 -1.8995 27 1 0.1017 0.4239 -3.6845 28 1 5.0417 2.3943 -3.7425 29 1 5.2557 -1.8564 0.5413 30 1 4.1255 -3.9895 0.4812 31 1 2.6247 -3.3048 1.1879 32 1 5.3202 -3.8102 2.5644 33 1 3.6846 -4.2759 3.1247 34 1 3.2000 -2.1259 3.8925 35 1 4.9779 -1.9803 3.9776 36 1 3.1478 -0.5389 2.2486 37 1 4.9257 -0.3924 2.3336 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933241177.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:53 Heat of formation + Delta-G solvation = -97.707602 kcal Electronic energy + Delta-G solvation = -26046.708922 eV Core-core repulsion = 22165.554007 eV Total energy + Delta-G solvation = -3881.154914 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.91604 -47.93505 -41.39323 -38.90942 -37.72537 -36.01625 -33.81442 -31.91336 -29.58109 -29.35813 -27.45116 -26.51066 -24.47955 -22.32171 -21.62882 -20.84304 -20.74485 -19.40784 -18.77400 -18.22960 -17.87123 -17.64885 -16.93298 -16.46885 -16.18828 -15.93620 -15.71062 -15.47405 -15.14109 -14.69476 -14.49099 -14.32004 -14.28622 -14.17672 -13.83481 -13.46306 -13.23865 -13.07841 -12.84006 -12.50369 -12.29107 -12.23953 -12.03779 -11.99416 -11.91187 -11.69155 -11.42632 -11.25590 -10.95657 -10.64480 -9.83783 -9.46966 -9.14764 -8.47305 -6.28626 -0.38815 0.48715 0.88337 1.15900 1.19894 1.29721 1.45245 2.17720 2.33602 2.65140 2.84428 2.87886 3.11748 3.70521 3.78776 3.82418 3.96933 4.01905 4.07892 4.35801 4.54670 4.59553 4.62221 4.63951 4.70077 4.87248 4.95989 4.99943 5.11434 5.20631 5.29985 5.34380 5.41294 5.53268 5.56310 5.73844 5.90612 6.39344 6.97419 7.29384 7.77081 8.57311 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016091 B = 0.007461 C = 0.006209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.633748 B = 3752.123146 C = 4508.814673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.087 3.913 3 Si 0.866 3.134 4 H -0.222 1.222 5 H -0.298 1.298 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.092 0.908 9 N -0.460 5.460 10 C 0.523 3.477 11 O -0.598 6.598 12 C -0.111 4.111 13 C -0.088 4.088 14 C -0.229 4.229 15 S 0.253 5.747 16 C -0.306 4.306 17 C 0.342 3.658 18 F -0.215 7.215 19 F -0.194 7.194 20 C 0.121 3.879 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.110 4.110 24 C -0.130 4.130 25 H 0.280 0.720 26 H 0.173 0.827 27 H 0.195 0.805 28 H 0.164 0.836 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 1.674 -4.323 5.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.121 4.121 3 Si 0.693 3.307 4 H -0.145 1.145 5 H -0.226 1.226 6 H -0.220 1.220 7 C -0.467 4.467 8 H 0.109 0.891 9 N -0.180 5.180 10 C 0.312 3.688 11 O -0.484 6.484 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.364 4.364 15 S 0.520 5.480 16 C -0.426 4.426 17 C 0.288 3.712 18 F -0.196 7.196 19 F -0.175 7.175 20 C 0.018 3.982 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.148 4.148 24 C -0.169 4.169 25 H 0.091 0.909 26 H 0.190 0.810 27 H 0.212 0.788 28 H 0.181 0.819 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.259 2.844 -5.495 6.587 hybrid contribution 0.403 -0.182 1.665 1.723 sum 2.662 2.662 -3.830 5.371 Atomic orbital electron populations 1.69658 1.06032 1.28684 1.46725 1.25645 0.95280 0.98539 0.92639 0.87071 0.78602 0.83355 0.81645 1.14537 1.22630 1.22037 1.18677 0.79763 0.94338 1.53899 0.89079 1.43656 1.06740 1.51101 1.16467 1.18373 0.86937 0.81335 0.82163 1.90680 1.15566 1.64432 1.77727 1.20294 0.95881 0.98306 0.98703 1.22002 0.91384 1.02284 0.95872 1.25887 1.05051 1.02171 1.03278 1.81823 0.95601 1.36111 1.34493 1.25241 1.02991 1.06404 1.07943 1.20091 0.82050 0.86761 0.82347 1.92957 1.93877 1.87581 1.45185 1.93026 1.69532 1.62561 1.92403 1.22176 0.94216 0.93951 0.87856 1.22721 1.01403 0.93943 0.97648 1.22260 1.01551 0.97002 0.93979 1.22019 1.02385 0.93863 0.96523 1.22381 1.00496 0.98717 0.95260 0.90911 0.80977 0.78779 0.81871 0.91151 0.91890 0.91190 0.90580 0.89644 0.91384 0.90276 0.93118 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -43.79 13.59 21.67 0.29 -43.50 16 2 C 0.09 4.30 2.94 84.93 0.25 4.55 16 3 Si 0.87 42.27 23.00 68.60 1.58 43.85 16 4 H -0.22 -9.87 4.16 99.48 0.41 -9.46 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 6 H -0.29 -16.14 7.01 99.48 0.70 -15.44 16 7 C -0.34 -16.81 5.79 84.07 0.49 -16.32 16 8 H 0.09 4.75 6.94 -2.91 -0.02 4.73 16 9 N -0.46 -22.54 1.97 -610.93 -1.20 -23.74 16 10 C 0.52 26.67 5.71 86.57 0.49 27.17 16 11 O -0.60 -32.77 12.98 -4.22 -0.05 -32.83 16 12 C -0.11 -5.01 3.04 -19.87 -0.06 -5.07 16 13 C -0.09 -3.66 6.31 22.67 0.14 -3.51 16 14 C -0.23 -7.55 11.00 66.64 0.73 -6.82 16 15 S 0.25 7.28 22.28 -56.49 -1.26 6.02 16 16 C -0.31 -11.87 4.09 25.19 0.10 -11.77 16 17 C 0.34 12.69 5.05 71.23 0.36 13.05 16 18 F -0.21 -9.39 16.26 44.97 0.73 -8.66 16 19 F -0.19 -8.20 15.11 44.97 0.68 -7.52 16 20 C 0.12 5.29 3.26 46.19 0.15 5.44 16 21 C -0.12 -4.28 6.39 32.01 0.20 -4.08 16 22 C -0.11 -3.08 6.82 31.67 0.22 -2.87 16 23 C -0.11 -3.34 6.80 31.32 0.21 -3.13 16 24 C -0.13 -5.26 6.43 31.32 0.20 -5.06 16 25 H 0.28 13.39 8.31 -92.71 -0.77 12.62 16 26 H 0.17 7.96 5.11 -2.91 -0.01 7.95 16 27 H 0.20 5.16 8.06 -2.91 -0.02 5.13 16 28 H 0.16 4.05 8.11 -2.39 -0.02 4.03 16 29 H 0.07 3.26 6.99 -2.39 -0.02 3.24 16 30 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.07 2.72 6.39 -2.39 -0.02 2.71 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 2.31 7.03 -2.39 -0.02 2.30 16 37 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -64.27 302.90 5.07 -59.20 By element: Atomic # 1 Polarization: 14.76 SS G_CDS: 0.80 Total: 15.57 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 3.50 Total: -8.41 kcal Atomic # 7 Polarization: -66.33 SS G_CDS: -0.91 Total: -67.24 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -0.05 Total: -32.83 kcal Atomic # 9 Polarization: -17.58 SS G_CDS: 1.41 Total: -16.17 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 1.58 Total: 43.85 kcal Atomic # 16 Polarization: 7.28 SS G_CDS: -1.26 Total: 6.02 kcal Total: -64.27 5.07 -59.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933241177.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.503 kcal (2) G-P(sol) polarization free energy of solvation -64.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds