Wall clock time and date at job start Tue Mar 31 2020 10:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29028 * 124.91855 * 2 1 4 4 C 1.31771 * 117.12878 * 180.02562 * 3 2 1 5 5 C 1.33644 * 114.50041 * 359.97438 * 4 3 2 6 6 C 1.50700 * 126.03938 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.47280 * 90.00130 * 6 5 4 8 8 C 1.46897 * 111.00314 * 179.97438 * 7 6 5 9 9 C 1.53007 * 109.46932 * 180.02562 * 8 7 6 10 10 N 1.46504 * 109.46885 * 180.02562 * 9 8 7 11 11 C 1.34768 * 119.99759 * 180.02562 * 10 9 8 12 12 O 1.21278 * 120.00350 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.99625 * 179.97438 * 11 10 9 14 14 S 1.81000 * 109.46952 * 180.02562 * 13 11 10 15 15 C 1.76200 * 100.00231 * 180.02562 * 14 13 11 16 16 H 1.08000 * 119.99535 * 0.02562 * 15 14 13 17 17 C 1.38794 * 120.00433 * 179.97438 * 15 14 13 18 18 N 1.31634 * 119.99744 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00148 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46755 * 90.00714 * 19 17 15 21 21 H 1.48499 * 109.47003 * 210.00404 * 19 17 15 22 22 H 1.48500 * 109.46962 * 330.00284 * 19 17 15 23 23 S 1.70979 * 124.91569 * 180.02562 * 2 1 3 24 24 H 1.08997 * 109.47106 * 269.99927 * 1 2 3 25 25 H 1.08995 * 109.46993 * 30.00161 * 1 2 3 26 26 H 1.08999 * 109.46860 * 149.99764 * 1 2 3 27 27 H 1.08002 * 122.75353 * 180.27327 * 4 3 2 28 28 H 1.08996 * 109.47247 * 210.00530 * 6 5 4 29 29 H 1.09005 * 109.47214 * 330.00706 * 6 5 4 30 30 H 1.00905 * 110.99822 * 56.04494 * 7 6 5 31 31 H 1.08992 * 109.47509 * 300.00108 * 8 7 6 32 32 H 1.09000 * 109.46927 * 60.00352 * 8 7 6 33 33 H 1.08994 * 109.47098 * 299.99747 * 9 8 7 34 34 H 1.09000 * 109.47143 * 60.00343 * 9 8 7 35 35 H 0.96997 * 119.99696 * 359.97438 * 10 9 8 36 36 H 1.08994 * 109.47059 * 299.99737 * 13 11 10 37 37 H 1.09000 * 109.47071 * 60.00264 * 13 11 10 38 38 H 0.97006 * 119.99581 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0580 0.0000 4 6 3.5511 0.8794 -0.0005 5 6 3.9354 -0.4006 -0.0004 6 6 5.3575 -0.8994 -0.0004 7 7 5.8196 -1.0614 1.3846 8 6 7.2050 -1.5481 1.4238 9 6 7.6495 -1.7046 2.8795 10 7 9.0315 -2.1893 2.9186 11 6 9.6373 -2.4029 4.1034 12 8 9.0387 -2.1934 5.1371 13 6 11.0587 -2.9020 4.1436 14 16 11.5841 -3.0885 5.8656 15 6 13.2310 -3.6657 5.6223 16 1 13.6143 -3.7984 4.6213 17 6 14.0361 -3.9489 6.7169 18 7 13.5690 -3.7867 7.9368 19 14 15.7818 -4.5615 6.4588 20 1 16.7080 -3.4028 6.3913 21 1 16.1703 -5.4405 7.5909 22 1 15.8547 -5.3283 5.1892 23 16 2.4856 -1.4020 -0.0006 24 1 -0.3633 0.0000 1.0276 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8900 -0.5139 27 1 4.2532 1.7001 0.0038 28 1 5.4058 -1.8594 -0.5143 29 1 5.9950 -0.1798 -0.5142 30 1 5.2065 -1.6745 1.9009 31 1 7.2658 -2.5127 0.9201 32 1 7.8555 -0.8333 0.9198 33 1 7.5888 -0.7401 3.3836 34 1 6.9989 -2.4195 3.3832 35 1 9.5101 -2.3572 2.0919 36 1 11.1196 -3.8663 3.6392 37 1 11.7093 -2.1869 3.6403 38 1 14.1316 -3.9850 8.7018 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123786963.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:20 Heat of formation + Delta-G solvation = 2.687425 kcal Electronic energy + Delta-G solvation = -19604.229320 eV Core-core repulsion = 16313.560998 eV Total energy + Delta-G solvation = -3290.668322 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.11526 -39.21652 -37.16042 -34.56982 -32.72566 -32.43120 -30.68888 -29.30246 -27.26251 -25.49589 -24.90268 -23.54875 -22.43127 -20.38372 -19.86020 -18.44101 -17.86442 -16.71365 -16.33497 -16.03267 -15.64358 -15.39038 -14.95836 -14.80984 -14.70948 -14.41058 -13.99847 -13.85050 -13.69978 -13.14517 -13.09304 -12.93371 -12.57138 -12.42990 -12.25905 -11.84776 -11.68278 -11.45807 -11.06634 -11.02867 -10.76842 -10.04614 -9.82450 -9.75796 -9.44222 -9.20972 -9.07522 -8.95430 -8.91439 -8.24012 -6.50475 -6.21960 -3.92695 0.24574 0.88080 1.29935 2.41576 2.96286 3.08859 3.22105 3.26213 3.30223 3.56867 3.73971 4.06819 4.20025 4.32849 4.54072 4.61533 4.68160 4.83859 4.93806 4.97927 5.06108 5.13191 5.15588 5.18471 5.34230 5.37908 5.59696 5.72168 5.78538 5.85837 5.89163 6.12661 6.37505 6.57842 6.80038 7.33129 7.59070 7.67231 8.34767 8.59649 9.23291 10.85457 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.052797 B = 0.001621 C = 0.001604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.202212 B =17270.147470 C =17450.632937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.048 3.952 3 N -0.476 5.476 4 C 0.060 3.940 5 C -0.224 4.224 6 C 0.140 3.860 7 N -0.681 5.681 8 C 0.049 3.951 9 C 0.123 3.877 10 N -0.739 5.739 11 C 0.532 3.468 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.073 0.927 17 C 0.074 3.926 18 N -0.867 5.867 19 Si 0.919 3.081 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 S 0.116 5.884 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.177 0.823 28 H 0.045 0.955 29 H 0.097 0.903 30 H 0.346 0.654 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.909 4.866 -21.632 31.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.229 4.229 3 N -0.191 5.191 4 C -0.092 4.092 5 C -0.345 4.345 6 C 0.009 3.991 7 N -0.313 5.313 8 C -0.080 4.080 9 C -0.002 4.002 10 N -0.395 5.395 11 C 0.318 3.682 12 O -0.389 6.389 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.685 4.685 16 H 0.091 0.909 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 S 0.370 5.630 24 H 0.106 0.894 25 H 0.108 0.892 26 H 0.099 0.901 27 H 0.194 0.806 28 H 0.063 0.937 29 H 0.115 0.885 30 H 0.164 0.836 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -24.191 5.308 -19.629 31.602 hybrid contribution 2.548 -0.885 -1.996 3.356 sum -21.643 4.423 -21.625 30.913 Atomic orbital electron populations 1.20469 0.85143 1.04247 1.04097 1.27069 1.01856 0.90893 1.03109 1.66312 1.05028 1.31542 1.16236 1.21730 0.90877 0.95991 1.00564 1.25809 0.99158 0.96366 1.13206 1.20219 0.88451 1.00179 0.90270 1.60377 1.03114 1.55281 1.12548 1.22121 0.89928 0.99054 0.96901 1.21121 0.82983 1.00688 0.95396 1.45888 1.14358 1.70342 1.08867 1.20301 0.88209 0.76761 0.82913 1.90712 1.65945 1.49615 1.32673 1.23528 0.94662 1.03654 1.08529 1.85417 1.14644 1.86627 0.96669 1.22870 0.98515 1.51562 0.95508 0.90920 1.24993 0.99060 0.95086 0.94431 1.70024 1.36776 1.45636 0.97820 0.86163 0.82600 0.78710 0.77992 1.20260 1.20743 1.19717 1.84028 0.98003 1.12522 1.68481 0.89395 0.89186 0.90069 0.80567 0.93650 0.88511 0.83557 0.94279 0.89921 0.90567 0.91775 0.76886 0.89227 0.89166 0.92173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.46 36.01 0.38 0.02 16 2 C 0.05 0.37 7.39 -13.46 -0.10 0.28 16 3 N -0.48 -4.68 10.54 -11.86 -0.13 -4.80 16 4 C 0.06 0.52 11.25 -19.19 -0.22 0.31 16 5 C -0.22 -1.71 6.11 -35.92 -0.22 -1.93 16 6 C 0.14 0.90 6.22 -4.98 -0.03 0.87 16 7 N -0.68 -5.24 6.49 -115.06 -0.75 -5.99 16 8 C 0.05 0.38 5.80 -3.82 -0.02 0.35 16 9 C 0.12 1.38 5.93 -4.04 -0.02 1.36 16 10 N -0.74 -9.51 5.56 -60.29 -0.33 -9.84 16 11 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 12 O -0.52 -11.81 15.86 5.56 0.09 -11.72 16 13 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.27 9.50 30.94 0.29 -14.98 16 16 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 17 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.18 13.22 55.49 0.73 -25.44 16 19 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 23 S 0.12 0.78 23.18 -107.50 -2.49 -1.71 16 24 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.18 1.29 8.06 -52.49 -0.42 0.86 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.35 2.65 8.72 -39.29 -0.34 2.31 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 3.81 8.47 -40.82 -0.35 3.47 16 36 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 37 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 38 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 359.38 15.07 5.42 5.42 Total: -1.00 -35.81 359.38 -9.90 -45.71 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.31 Total: 0.65 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 0.10 Total: -4.76 kcal Atomic # 7 Polarization: -45.60 SS G_CDS: -0.47 Total: -46.07 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.09 Total: -11.72 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 16 Polarization: -0.85 SS G_CDS: -4.70 Total: -5.55 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.81 -9.90 -45.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123786963.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.399 kcal (2) G-P(sol) polarization free energy of solvation -35.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds