Wall clock time and date at job start Tue Mar 31 2020 10:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91251 * 2 1 4 4 C 1.31779 * 117.12188 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74976 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47194 * 275.02238 * 5 4 3 7 7 C 1.46902 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46626 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.46998 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00241 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99850 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00466 * 179.97438 * 10 9 8 13 13 S 1.80999 * 109.47555 * 179.97438 * 12 10 9 14 14 C 1.76195 * 99.99987 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99979 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99978 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47523 * 59.99863 * 18 16 14 20 20 H 1.48498 * 109.47375 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47074 * 300.00175 * 18 16 14 22 22 C 1.33639 * 114.50176 * 0.22806 * 4 3 2 23 23 S 1.70969 * 124.91808 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47364 * 90.00261 * 1 2 3 25 25 H 1.09001 * 109.46848 * 210.00412 * 1 2 3 26 26 H 1.09001 * 109.46987 * 329.99918 * 1 2 3 27 27 H 1.09002 * 109.47213 * 155.02176 * 5 4 3 28 28 H 1.09001 * 109.47086 * 35.01932 * 5 4 3 29 29 H 1.00898 * 110.99743 * 303.94953 * 6 5 4 30 30 H 1.08993 * 109.47737 * 60.00169 * 7 6 5 31 31 H 1.09000 * 109.47263 * 299.99731 * 7 6 5 32 32 H 1.09000 * 109.47050 * 299.99824 * 8 7 6 33 33 H 1.09001 * 109.46801 * 59.99937 * 8 7 6 34 34 H 0.97010 * 119.99910 * 359.97438 * 9 8 7 35 35 H 1.09004 * 109.46818 * 300.00196 * 12 10 9 36 36 H 1.09004 * 109.46923 * 59.99646 * 12 10 9 37 37 H 0.97009 * 119.99700 * 179.97438 * 17 16 14 38 38 H 1.08005 * 126.04040 * 179.77132 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 7 4.7562 2.4754 -1.3810 7 6 5.7085 3.5932 -1.4207 8 6 5.9169 4.0343 -2.8709 9 7 6.8662 5.1495 -2.9105 10 6 7.2037 5.7056 -4.0907 11 8 6.7218 5.2826 -5.1202 12 6 8.1797 6.8531 -4.1315 13 16 8.4264 7.3750 -5.8469 14 6 9.5759 8.6882 -5.6050 15 1 9.9066 8.9395 -4.6081 16 6 10.0571 9.3990 -6.6957 17 7 9.6543 9.0924 -7.9108 18 14 11.2763 10.7908 -6.4393 19 1 12.5012 10.2622 -5.7870 20 1 11.6318 11.3857 -7.7527 21 1 10.6648 11.8315 -5.5744 22 6 3.9354 -0.4005 -0.0058 23 16 2.4857 -1.4019 -0.0006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 5.4749 1.6954 0.4325 28 1 4.1275 2.8479 0.5886 29 1 5.0691 1.7134 -1.9637 30 1 6.6609 3.2744 -0.9971 31 1 5.3140 4.4274 -0.8407 32 1 6.3113 3.2002 -3.4513 33 1 4.9643 4.3533 -3.2940 34 1 7.2513 5.4881 -2.0870 35 1 7.7847 7.6868 -3.5509 36 1 9.1325 6.5349 -3.7083 37 1 9.9904 9.5894 -8.6731 38 1 4.9546 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:22 Heat of formation + Delta-G solvation = 4.329586 kcal Electronic energy + Delta-G solvation = -19684.777996 eV Core-core repulsion = 16394.180884 eV Total energy + Delta-G solvation = -3290.597112 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.33403 -39.16712 -36.87072 -34.41090 -32.70407 -32.41543 -30.30561 -28.94254 -27.96693 -25.70952 -25.34930 -22.81230 -22.35956 -20.34635 -20.08405 -18.29681 -17.79888 -16.40850 -16.26841 -16.05220 -15.73472 -15.41620 -15.09441 -14.79378 -14.54864 -14.33327 -13.94353 -13.77309 -13.38709 -13.19770 -13.09153 -12.84151 -12.61693 -12.53138 -12.16950 -11.78258 -11.61508 -11.43156 -11.03351 -11.02816 -10.75985 -10.00639 -9.81476 -9.80751 -9.42091 -9.21126 -9.05211 -8.87941 -8.83697 -8.22470 -6.48656 -6.20214 -3.90879 0.27655 0.93686 1.30246 2.30577 3.01173 3.12097 3.24400 3.27816 3.30787 3.57614 3.67296 4.16317 4.21755 4.43259 4.65689 4.68778 4.78700 4.87098 4.91708 5.00718 5.06184 5.14733 5.18428 5.23843 5.36255 5.42371 5.62798 5.72817 5.78059 5.90494 5.93046 6.14995 6.47429 6.63187 6.91883 7.39338 7.60369 7.71102 8.36205 8.63039 9.24799 10.87137 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.048377 B = 0.001613 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.646102 B =17351.091919 C =17499.213557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.051 3.949 3 N -0.457 5.457 4 C 0.077 3.923 5 C 0.135 3.865 6 N -0.678 5.678 7 C 0.051 3.949 8 C 0.123 3.877 9 N -0.739 5.739 10 C 0.532 3.468 11 O -0.516 6.516 12 C -0.153 4.153 13 S -0.060 6.060 14 C -0.537 4.537 15 H 0.072 0.928 16 C 0.074 3.926 17 N -0.868 5.868 18 Si 0.919 3.081 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.274 1.274 22 C -0.258 4.258 23 S 0.114 5.886 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.345 0.655 30 H 0.038 0.962 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.076 0.924 34 H 0.398 0.602 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.269 0.731 38 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.916 -21.208 21.490 33.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.228 4.228 3 N -0.171 5.171 4 C -0.055 4.055 5 C 0.004 3.996 6 N -0.310 5.310 7 C -0.078 4.078 8 C -0.002 4.002 9 N -0.394 5.394 10 C 0.318 3.682 11 O -0.390 6.390 12 C -0.304 4.304 13 S 0.167 5.833 14 C -0.685 4.685 15 H 0.090 0.910 16 C -0.136 4.136 17 N -0.503 5.503 18 Si 0.745 3.255 19 H -0.200 1.200 20 H -0.208 1.208 21 H -0.199 1.199 22 C -0.398 4.398 23 S 0.369 5.631 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.109 0.891 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.163 0.837 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.094 0.906 34 H 0.231 0.769 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -15.746 -22.043 19.554 33.409 hybrid contribution 3.044 1.685 1.921 3.974 sum -12.702 -20.358 21.475 32.202 Atomic orbital electron populations 1.20470 0.85035 1.04245 1.04166 1.27122 1.01936 0.90768 1.02963 1.66082 1.04414 1.31310 1.15338 1.20090 0.90275 0.93561 1.01604 1.20392 0.94311 0.94191 0.90731 1.60235 1.49601 1.11760 1.09419 1.22105 0.93989 0.94715 0.97035 1.21122 0.93931 0.89669 0.95430 1.45891 1.47748 1.36396 1.09381 1.20295 0.81713 0.83319 0.82870 1.90710 1.53300 1.62169 1.32830 1.23531 1.00085 0.98289 1.08474 1.85409 1.58284 1.42172 0.97462 1.22832 1.30088 1.19606 0.95964 0.90970 1.24992 0.96666 0.97482 0.94434 1.70014 1.42222 1.39846 0.98191 0.86220 0.80601 0.81041 0.77605 1.19963 1.20808 1.19944 1.26872 1.03341 0.95942 1.13641 1.84003 0.97825 1.12921 1.68340 0.89338 0.90103 0.89110 0.93214 0.88954 0.83715 0.94361 0.89994 0.91816 0.90598 0.76893 0.89165 0.89238 0.92131 0.80653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.46 36.01 0.38 0.00 16 2 C 0.05 0.40 7.39 -13.45 -0.10 0.30 16 3 N -0.46 -4.73 10.53 -8.06 -0.08 -4.81 16 4 C 0.08 0.69 6.25 -84.23 -0.53 0.17 16 5 C 0.14 1.06 6.12 -4.97 -0.03 1.03 16 6 N -0.68 -6.04 6.49 -115.05 -0.75 -6.78 16 7 C 0.05 0.44 5.80 -3.82 -0.02 0.41 16 8 C 0.12 1.47 5.93 -4.04 -0.02 1.45 16 9 N -0.74 -9.90 5.56 -60.29 -0.33 -10.23 16 10 C 0.53 10.09 7.85 -10.99 -0.09 10.01 16 11 O -0.52 -12.03 15.86 5.56 0.09 -11.94 16 12 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 13 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 14 C -0.54 -15.39 9.50 30.94 0.29 -15.09 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 17 N -0.87 -26.32 13.22 55.49 0.73 -25.59 16 18 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 22 C -0.26 -1.84 11.12 29.12 0.32 -1.52 16 23 S 0.11 0.74 23.18 -107.50 -2.49 -1.75 16 24 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.30 8.10 -51.93 -0.42 -0.12 16 28 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.34 2.87 8.72 -39.29 -0.34 2.52 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.40 4.02 8.47 -40.82 -0.35 3.67 16 35 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 36 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 37 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 38 H 0.18 0.85 8.06 -52.48 -0.42 0.43 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -36.32 359.25 -9.63 -45.95 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.30 Total: 1.25 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 0.33 Total: -4.12 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.43 Total: -47.41 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -0.91 SS G_CDS: -4.70 Total: -5.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -36.32 -9.63 -45.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.281 kcal (2) G-P(sol) polarization free energy of solvation -36.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds