Wall clock time and date at job start Tue Mar 31 2020 10:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29031 * 124.91251 * 2 1 4 4 C 1.31779 * 117.12188 * 180.02562 * 3 2 1 5 5 C 1.50698 * 122.74976 * 179.97438 * 4 3 2 6 6 N 1.46905 * 109.47194 * 275.02238 * 5 4 3 7 7 C 1.46902 * 110.99800 * 180.02562 * 6 5 4 8 8 C 1.53006 * 109.46626 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.46998 * 179.97438 * 8 7 6 10 10 C 1.34769 * 120.00241 * 180.02562 * 9 8 7 11 11 O 1.21282 * 119.99850 * 359.97438 * 10 9 8 12 12 C 1.50702 * 120.00466 * 179.97438 * 10 9 8 13 13 S 1.80999 * 109.47555 * 179.97438 * 12 10 9 14 14 C 1.76195 * 99.99987 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99979 * 0.02562 * 14 13 12 16 16 C 1.38799 * 119.99978 * 179.97438 * 14 13 12 17 17 N 1.31631 * 119.99679 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00227 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47523 * 59.99863 * 18 16 14 20 20 H 1.48498 * 109.47375 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47074 * 300.00175 * 18 16 14 22 22 C 1.33639 * 114.50176 * 0.22806 * 4 3 2 23 23 S 1.70969 * 124.91808 * 180.02562 * 2 1 3 24 24 H 1.08994 * 109.47364 * 90.00261 * 1 2 3 25 25 H 1.09001 * 109.46848 * 210.00412 * 1 2 3 26 26 H 1.09001 * 109.46987 * 329.99918 * 1 2 3 27 27 H 1.09002 * 109.47213 * 155.02176 * 5 4 3 28 28 H 1.09001 * 109.47086 * 35.01932 * 5 4 3 29 29 H 1.00898 * 110.99743 * 303.94953 * 6 5 4 30 30 H 1.08993 * 109.47737 * 60.00169 * 7 6 5 31 31 H 1.09000 * 109.47263 * 299.99731 * 7 6 5 32 32 H 1.09000 * 109.47050 * 299.99824 * 8 7 6 33 33 H 1.09001 * 109.46801 * 59.99937 * 8 7 6 34 34 H 0.97010 * 119.99910 * 359.97438 * 9 8 7 35 35 H 1.09004 * 109.46818 * 300.00196 * 12 10 9 36 36 H 1.09004 * 109.46923 * 59.99646 * 12 10 9 37 37 H 0.97009 * 119.99700 * 179.97438 * 17 16 14 38 38 H 1.08005 * 126.04040 * 179.77132 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5511 0.8795 -0.0005 5 6 4.5306 2.0247 -0.0012 6 7 4.7562 2.4754 -1.3810 7 6 5.7085 3.5932 -1.4207 8 6 5.9169 4.0343 -2.8709 9 7 6.8662 5.1495 -2.9105 10 6 7.2037 5.7056 -4.0907 11 8 6.7218 5.2826 -5.1202 12 6 8.1797 6.8531 -4.1315 13 16 8.4264 7.3750 -5.8469 14 6 9.5759 8.6882 -5.6050 15 1 9.9066 8.9395 -4.6081 16 6 10.0571 9.3990 -6.6957 17 7 9.6543 9.0924 -7.9108 18 14 11.2763 10.7908 -6.4393 19 1 12.5012 10.2622 -5.7870 20 1 11.6318 11.3857 -7.7527 21 1 10.6648 11.8315 -5.5744 22 6 3.9354 -0.4005 -0.0058 23 16 2.4857 -1.4019 -0.0006 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 5.4749 1.6954 0.4325 28 1 4.1275 2.8479 0.5886 29 1 5.0691 1.7134 -1.9637 30 1 6.6609 3.2744 -0.9971 31 1 5.3140 4.4274 -0.8407 32 1 6.3113 3.2002 -3.4513 33 1 4.9643 4.3533 -3.2940 34 1 7.2513 5.4881 -2.0870 35 1 7.7847 7.6868 -3.5509 36 1 9.1325 6.5349 -3.7083 37 1 9.9904 9.5894 -8.6731 38 1 4.9546 -0.7580 -0.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:34:21 Heat of formation + Delta-G solvation = -24.269031 kcal Electronic energy + Delta-G solvation = -19686.018125 eV Core-core repulsion = 16394.180884 eV Total energy + Delta-G solvation = -3291.837241 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.91426 -40.60741 -37.69842 -35.53897 -34.57791 -33.33686 -31.55381 -29.76865 -28.78906 -27.65910 -26.33760 -23.39716 -23.18220 -21.78608 -20.63909 -19.84839 -18.83361 -17.83163 -17.33519 -17.04115 -16.87146 -16.39028 -16.27590 -16.19199 -15.76359 -15.25183 -14.98733 -14.68677 -14.59493 -14.30778 -14.03646 -13.77609 -13.52824 -13.32259 -13.16520 -13.01513 -12.86102 -12.69092 -12.57367 -12.45507 -12.14903 -11.74117 -11.12268 -11.01167 -10.57845 -10.35712 -10.27510 -10.15218 -9.75234 -9.44907 -8.66708 -8.33834 -6.12405 -0.25779 0.43729 0.76679 1.26512 1.44717 1.46676 1.56202 1.60311 1.72117 2.23445 2.28857 3.00192 3.12502 3.29247 3.43920 3.82305 3.93883 4.05324 4.07025 4.21700 4.31561 4.33892 4.46659 4.50689 4.51445 4.52687 4.66703 4.82852 4.90681 4.92829 5.01922 5.23591 5.38468 5.42221 5.87195 6.20232 6.28459 6.49688 6.84782 7.07146 7.23817 8.75160 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.048377 B = 0.001613 C = 0.001600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.646102 B =17351.091919 C =17499.213557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.033 3.967 3 N -0.497 5.497 4 C 0.054 3.946 5 C 0.140 3.860 6 N -0.693 5.693 7 C 0.065 3.935 8 C 0.125 3.875 9 N -0.710 5.710 10 C 0.533 3.467 11 O -0.568 6.568 12 C -0.128 4.128 13 S -0.154 6.154 14 C -0.548 4.548 15 H 0.084 0.916 16 C 0.013 3.987 17 N -0.912 5.912 18 Si 1.000 3.000 19 H -0.261 1.261 20 H -0.279 1.279 21 H -0.262 1.262 22 C -0.259 4.259 23 S 0.147 5.853 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.347 0.653 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.418 0.582 35 H 0.111 0.889 36 H 0.113 0.887 37 H 0.271 0.729 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.013 -21.600 24.089 34.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.244 4.244 3 N -0.213 5.213 4 C -0.078 4.078 5 C 0.009 3.991 6 N -0.326 5.326 7 C -0.064 4.064 8 C 0.001 3.999 9 N -0.365 5.365 10 C 0.319 3.681 11 O -0.446 6.446 12 C -0.280 4.280 13 S 0.073 5.927 14 C -0.695 4.695 15 H 0.102 0.898 16 C -0.192 4.192 17 N -0.548 5.548 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.204 1.204 21 H -0.187 1.187 22 C -0.399 4.399 23 S 0.401 5.599 24 H 0.112 0.888 25 H 0.121 0.879 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.165 0.835 30 H 0.079 0.921 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.256 0.744 35 H 0.129 0.871 36 H 0.131 0.869 37 H 0.080 0.920 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -14.851 -22.454 22.230 34.913 hybrid contribution 2.669 1.662 1.204 3.366 sum -12.182 -20.792 23.434 33.613 Atomic orbital electron populations 1.20599 0.83440 1.05184 1.04779 1.27611 1.03209 0.91128 1.02480 1.66105 1.05402 1.32879 1.16884 1.20291 0.90185 0.94527 1.02802 1.20379 0.95076 0.93799 0.89865 1.60181 1.49955 1.12061 1.10418 1.21949 0.95195 0.94985 0.94261 1.21170 0.92220 0.88579 0.97926 1.45580 1.46747 1.35702 1.08474 1.20096 0.81311 0.83067 0.83649 1.90700 1.55224 1.63690 1.34969 1.23368 1.01915 0.99542 1.03147 1.85614 1.58990 1.43230 1.04899 1.23184 1.30027 1.19608 0.96711 0.89770 1.26146 0.98710 1.00417 0.93925 1.70188 1.43869 1.41428 0.99312 0.84988 0.77893 0.77201 0.77806 1.18584 1.20442 1.18669 1.27188 1.04706 0.95630 1.12406 1.83844 0.96953 1.11660 1.67403 0.88789 0.87878 0.89474 0.90948 0.89804 0.83465 0.92051 0.89352 0.92422 0.92781 0.74440 0.87055 0.86915 0.92005 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.71 10.46 71.24 0.75 0.04 16 2 C 0.03 0.51 7.39 88.52 0.65 1.16 16 3 N -0.50 -10.14 10.53 -179.41 -1.89 -12.03 16 4 C 0.05 0.92 6.25 41.52 0.26 1.18 16 5 C 0.14 1.98 6.12 85.56 0.52 2.50 16 6 N -0.69 -11.39 6.49 -517.91 -3.36 -14.75 16 7 C 0.07 0.97 5.80 86.31 0.50 1.47 16 8 C 0.13 2.86 5.93 86.38 0.51 3.37 16 9 N -0.71 -17.65 5.56 -463.05 -2.57 -20.22 16 10 C 0.53 19.87 7.85 87.66 0.69 20.56 16 11 O -0.57 -27.02 15.86 -3.04 -0.05 -27.07 16 12 C -0.13 -5.07 6.16 71.24 0.44 -4.64 16 13 S -0.15 -8.66 20.57 -56.49 -1.16 -9.82 16 14 C -0.55 -31.36 9.50 67.95 0.65 -30.72 16 15 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 16 C 0.01 0.73 5.49 84.86 0.47 1.20 16 17 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 18 Si 1.00 43.61 29.55 68.60 2.03 45.64 16 19 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 20 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 21 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 22 C -0.26 -3.28 11.12 66.78 0.74 -2.53 16 23 S 0.15 1.67 23.18 -56.49 -1.31 0.36 16 24 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 26 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.07 0.67 8.10 -2.39 -0.02 0.65 16 28 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.35 5.34 8.72 -89.70 -0.78 4.56 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.42 7.07 8.47 -92.70 -0.79 6.28 16 35 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 36 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 37 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 38 H 0.20 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -81.58 359.25 -2.33 -83.91 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -0.48 Total: 16.48 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 6.18 Total: -6.41 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -7.54 Total: -103.09 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Atomic # 16 Polarization: -6.99 SS G_CDS: -2.47 Total: -9.46 kcal Total: -81.58 -2.33 -83.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.644 kcal (2) G-P(sol) polarization free energy of solvation -81.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds