Wall clock time and date at job start Tue Mar 31 2020 10:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37812 * 121.55822 * 2 1 4 4 C 1.35144 * 114.75987 * 180.02562 * 3 2 1 5 5 C 1.50693 * 127.24907 * 180.26620 * 4 3 2 6 6 N 1.46899 * 109.47479 * 89.70172 * 5 4 3 7 7 C 1.46891 * 111.00105 * 180.02562 * 6 5 4 8 8 C 1.52996 * 109.47270 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47563 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00134 * 180.02562 * 9 8 7 11 11 O 1.21279 * 120.00188 * 0.02562 * 10 9 8 12 12 C 1.50704 * 119.99679 * 179.97438 * 10 9 8 13 13 S 1.80998 * 109.46872 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00038 * 180.02562 * 13 12 10 15 15 H 1.08007 * 120.00091 * 359.97438 * 14 13 12 16 16 C 1.38800 * 120.00353 * 179.97438 * 14 13 12 17 17 N 1.31627 * 120.00117 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99712 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47293 * 89.99822 * 18 16 14 20 20 H 1.48502 * 109.46887 * 209.99988 * 18 16 14 21 21 H 1.48497 * 109.47234 * 329.99811 * 18 16 14 22 22 S 1.72059 * 105.50009 * 359.97438 * 4 3 2 23 23 N 1.30078 * 121.55914 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47174 * 269.97482 * 1 2 3 25 25 H 1.09002 * 109.47372 * 29.98233 * 1 2 3 26 26 H 1.09007 * 109.47346 * 149.97629 * 1 2 3 27 27 H 1.07992 * 122.62094 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47118 * 209.70556 * 5 4 3 29 29 H 1.09000 * 109.46923 * 329.69577 * 5 4 3 30 30 H 1.00896 * 110.99765 * 56.04794 * 6 5 4 31 31 H 1.09002 * 109.47210 * 300.00078 * 7 6 5 32 32 H 1.09005 * 109.47383 * 59.99680 * 7 6 5 33 33 H 1.08994 * 109.47500 * 300.00054 * 8 7 6 34 34 H 1.09007 * 109.47131 * 60.00181 * 8 7 6 35 35 H 0.97006 * 119.99600 * 0.02562 * 9 8 7 36 36 H 1.08994 * 109.47232 * 300.00461 * 12 10 9 37 37 H 1.09003 * 109.46826 * 60.00660 * 12 10 9 38 38 H 0.97004 * 119.99728 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2282 1.1743 0.0000 4 6 3.5702 1.0143 -0.0005 5 6 4.6179 2.0974 0.0049 6 7 4.9529 2.4478 1.3916 7 6 5.9733 3.5036 1.4360 8 6 6.2949 3.8410 2.8932 9 7 7.3129 4.8936 2.9376 10 6 7.7550 5.3540 4.1246 11 8 7.3104 4.8966 5.1561 12 6 8.8027 6.4363 4.1701 13 16 9.1830 6.8356 5.8941 14 6 10.3973 8.0901 5.6568 15 1 10.6839 8.3822 4.6573 16 6 10.9856 8.7030 6.7545 17 7 11.8931 9.6398 6.5772 18 14 10.4905 8.1973 8.4832 19 1 11.3660 7.0903 8.9450 20 1 10.6350 9.3576 9.3988 21 1 9.0771 7.7422 8.4802 22 16 3.8305 -0.6864 -0.0003 23 7 2.1878 -1.1084 0.0005 24 1 -0.3633 -0.0005 1.0276 25 1 -0.3634 0.8901 -0.5136 26 1 -0.3634 -0.8898 -0.5142 27 1 1.7578 2.1464 0.0004 28 1 5.5121 1.7405 -0.5060 29 1 4.2328 2.9779 -0.5095 30 1 5.2515 1.6340 1.9080 31 1 6.8770 3.1567 0.9350 32 1 5.5972 4.3938 0.9317 33 1 5.3910 4.1880 3.3938 34 1 6.6709 2.9510 3.3978 35 1 7.6688 5.2592 2.1125 36 1 9.7062 6.0887 3.6694 37 1 8.4273 7.3267 3.6657 38 1 12.3045 10.0679 7.3443 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799695.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:41 Heat of formation + Delta-G solvation = -2.865495 kcal Electronic energy + Delta-G solvation = -19671.548249 eV Core-core repulsion = 16380.639134 eV Total energy + Delta-G solvation = -3290.909114 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.64394 -39.33592 -37.25113 -34.68557 -32.46060 -32.40613 -30.17629 -30.05163 -28.20672 -25.71736 -25.43986 -22.54368 -22.27659 -20.51931 -19.99972 -18.36771 -17.90150 -16.79511 -16.46835 -16.11550 -15.66921 -15.33776 -15.08006 -14.97497 -14.62698 -14.31399 -13.97464 -13.75970 -13.35465 -13.29944 -13.16750 -12.80677 -12.80295 -12.56131 -12.35519 -11.93877 -11.67712 -11.39604 -11.27659 -11.01657 -10.88516 -10.62669 -10.02412 -9.86825 -9.57782 -9.11049 -9.05624 -9.00388 -8.99469 -8.51623 -6.93379 -6.30154 -4.02088 0.22392 1.03574 1.42320 1.97658 2.70506 2.94328 3.18286 3.32564 3.49956 3.55012 3.85563 4.01067 4.32277 4.41704 4.48477 4.67404 4.69989 4.75212 4.79531 4.81963 4.98232 5.05944 5.08979 5.09428 5.27567 5.29651 5.39245 5.62037 5.62599 5.73464 5.76179 5.98583 6.23535 6.27060 6.46383 6.70408 7.54601 7.92811 8.40089 8.45010 9.16066 10.79004 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.042013 B = 0.001704 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.303304 B =16429.983370 C =16616.195932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.117 3.883 3 C -0.182 4.182 4 C -0.166 4.166 5 C 0.135 3.865 6 N -0.680 5.680 7 C 0.049 3.951 8 C 0.123 3.877 9 N -0.737 5.737 10 C 0.531 3.469 11 O -0.517 6.517 12 C -0.124 4.124 13 S -0.141 6.141 14 C -0.522 4.522 15 H 0.088 0.912 16 C 0.096 3.904 17 N -0.880 5.880 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.235 1.235 22 S 0.247 5.753 23 N -0.461 5.461 24 H 0.084 0.916 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.158 0.842 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.348 0.652 31 H 0.041 0.959 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.164 -17.701 -18.807 32.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.061 4.061 3 C -0.217 4.217 4 C -0.296 4.296 5 C 0.005 3.995 6 N -0.313 5.313 7 C -0.080 4.080 8 C -0.002 4.002 9 N -0.392 5.392 10 C 0.317 3.683 11 O -0.392 6.392 12 C -0.275 4.275 13 S 0.085 5.915 14 C -0.670 4.670 15 H 0.106 0.894 16 C -0.113 4.113 17 N -0.517 5.517 18 Si 0.681 3.319 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.159 1.159 22 S 0.401 5.599 23 N -0.284 5.284 24 H 0.103 0.897 25 H 0.101 0.899 26 H 0.097 0.903 27 H 0.176 0.824 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.166 0.834 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.233 0.767 36 H 0.115 0.885 37 H 0.116 0.884 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -19.414 -19.954 -16.933 32.585 hybrid contribution 0.664 1.860 -1.104 2.263 sum -18.750 -18.094 -18.037 31.691 Atomic orbital electron populations 1.20579 0.86398 1.03935 1.03794 1.21549 0.99209 0.88309 0.97033 1.21149 0.92373 1.00751 1.07436 1.25316 0.98685 1.01028 1.04615 1.20279 0.93912 0.94775 0.90567 1.60318 1.45016 1.13845 1.12101 1.22124 0.93259 0.95723 0.96899 1.21129 0.92275 0.91346 0.95437 1.45845 1.43454 1.41116 1.08823 1.20274 0.82275 0.82737 0.83003 1.90711 1.57378 1.58145 1.32921 1.23276 0.99731 0.99371 1.05081 1.84808 1.53822 1.50522 1.02369 1.22317 1.24533 1.22462 0.97676 0.89382 1.24712 0.93637 0.93662 0.99273 1.69938 1.25732 1.24293 1.31695 0.86734 0.82088 0.79081 0.83953 1.19205 1.19920 1.15905 1.84137 1.11189 0.96763 1.67771 1.76713 1.00020 1.26481 1.25138 0.89731 0.89926 0.90327 0.82397 0.93072 0.88382 0.83389 0.94053 0.89813 0.90504 0.91671 0.76693 0.88481 0.88395 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.27 36.00 0.37 -0.03 16 2 C 0.12 0.89 6.71 -83.49 -0.56 0.33 16 3 C -0.18 -1.24 9.91 -40.84 -0.40 -1.65 16 4 C -0.17 -1.15 6.11 -35.41 -0.22 -1.36 16 5 C 0.14 0.75 6.26 -4.98 -0.03 0.72 16 6 N -0.68 -4.60 6.49 -115.07 -0.75 -5.34 16 7 C 0.05 0.33 5.80 -3.83 -0.02 0.31 16 8 C 0.12 1.25 5.94 -4.04 -0.02 1.23 16 9 N -0.74 -8.67 5.56 -60.29 -0.33 -9.00 16 10 C 0.53 9.17 7.85 -10.98 -0.09 9.08 16 11 O -0.52 -11.07 15.86 5.56 0.09 -10.98 16 12 C -0.12 -2.33 6.16 36.01 0.22 -2.11 16 13 S -0.14 -3.56 18.55 -107.50 -1.99 -5.56 16 14 C -0.52 -14.95 10.04 30.94 0.31 -14.64 16 15 H 0.09 2.62 8.03 -52.48 -0.42 2.20 16 16 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 17 N -0.88 -26.42 13.97 55.49 0.78 -25.64 16 18 Si 0.86 21.71 27.74 -169.99 -4.72 16.99 16 19 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 21 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 22 S 0.25 1.96 23.72 -107.50 -2.55 -0.59 16 23 N -0.46 -4.46 12.05 32.03 0.39 -4.07 16 24 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.22 8.11 -51.93 -0.42 -0.20 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.35 2.34 8.72 -39.29 -0.34 2.00 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 35 H 0.40 3.43 8.47 -40.82 -0.35 3.08 16 36 H 0.10 1.69 8.14 -51.92 -0.42 1.26 16 37 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 38 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 356.55 15.07 5.37 5.37 Total: -1.00 -35.18 356.55 -9.59 -44.78 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.34 Total: -0.52 kcal Atomic # 6 Polarization: -4.89 SS G_CDS: -0.54 Total: -5.43 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.08 Total: -44.06 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.72 Total: 16.99 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -4.54 Total: -6.15 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.18 -9.59 -44.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799695.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.913 kcal (2) G-P(sol) polarization free energy of solvation -35.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.779 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds