Wall clock time and date at job start Tue Mar 31 2020 10:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47038 * 269.99600 * 3 2 1 5 5 H 1.48499 * 109.47415 * 29.99456 * 3 2 1 6 6 H 1.48497 * 109.47415 * 150.00083 * 3 2 1 7 7 C 1.38804 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99655 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00212 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 16 20 20 N 1.29029 * 124.91415 * 89.69936 * 19 18 17 21 21 C 1.31785 * 117.12192 * 179.81769 * 20 19 18 22 22 C 1.33637 * 114.50243 * 0.46251 * 21 20 19 23 23 S 1.70972 * 124.91937 * 270.00172 * 19 18 17 24 24 H 0.97002 * 119.99671 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47463 * 59.99871 * 10 9 7 26 26 H 1.09005 * 109.47601 * 300.00003 * 10 9 7 27 27 H 0.97006 * 119.99601 * 359.97438 * 13 11 10 28 28 H 1.08993 * 109.46962 * 59.99400 * 14 13 11 29 29 H 1.09005 * 109.46850 * 300.00153 * 14 13 11 30 30 H 1.08995 * 109.47485 * 60.00430 * 15 14 13 31 31 H 1.08996 * 109.47010 * 299.99222 * 15 14 13 32 32 H 1.09004 * 109.46889 * 60.00145 * 16 15 14 33 33 H 1.08995 * 109.47384 * 299.99786 * 16 15 14 34 34 H 1.00901 * 111.00067 * 303.95263 * 17 16 15 35 35 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 36 36 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 37 37 H 1.08004 * 122.74610 * 180.22701 * 21 20 19 38 38 H 1.08001 * 126.03862 * 179.72281 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4947 0.0016 14 6 7.4907 -4.7358 0.0021 15 6 7.7563 -6.2426 0.0020 16 6 9.2655 -6.4943 0.0020 17 7 9.5205 -7.9410 0.0025 18 6 10.9626 -8.2213 0.0031 19 6 11.1846 -9.7119 0.0029 20 7 11.2883 -10.4430 -1.0552 21 6 11.4852 -11.7337 -0.8766 22 6 11.5415 -12.1140 0.4033 23 16 11.3281 -10.6801 1.4048 24 1 -0.4850 0.8401 -0.0004 25 1 3.6439 -3.4314 -0.8893 26 1 3.6433 -3.4318 0.8907 27 1 5.4290 -5.2435 0.0009 28 1 7.9332 -4.2893 0.8925 29 1 7.9341 -4.2882 -0.8874 30 1 7.3138 -6.6895 -0.8882 31 1 7.3131 -6.6897 0.8918 32 1 9.7084 -6.0473 0.8920 33 1 9.7084 -6.0473 -0.8880 34 1 9.0653 -8.3882 0.7841 35 1 11.4176 -7.7865 -0.8869 36 1 11.4170 -7.7860 0.8931 37 1 11.5886 -12.4280 -1.6975 38 1 11.6907 -13.1222 0.7606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154803061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:57 Heat of formation + Delta-G solvation = 3.475402 kcal Electronic energy + Delta-G solvation = -19548.053060 eV Core-core repulsion = 16257.418908 eV Total energy + Delta-G solvation = -3290.634152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.13157 -39.30118 -37.34858 -35.07505 -32.48134 -32.41943 -30.67570 -29.18713 -27.29705 -25.62102 -24.65035 -23.41582 -21.93105 -20.54835 -20.32725 -18.50877 -17.84123 -16.76025 -16.33819 -16.25182 -16.04295 -15.54157 -15.31956 -14.94689 -14.72099 -14.42758 -14.19864 -13.89338 -13.79312 -13.26127 -12.87186 -12.79366 -12.60946 -12.12202 -12.02788 -11.96613 -11.79191 -11.25887 -11.20401 -11.00096 -10.59855 -10.10234 -9.92479 -9.85211 -9.53812 -9.48486 -9.03412 -9.00329 -8.94846 -8.49489 -6.91205 -6.28344 -4.00063 0.17440 0.83833 1.22383 2.33540 2.76704 2.98408 3.26900 3.34050 3.49477 3.51319 3.66783 3.84603 4.33805 4.44613 4.59377 4.65786 4.68725 4.72692 4.84640 4.85140 4.98512 5.10732 5.10851 5.17347 5.32489 5.33573 5.48484 5.63283 5.75832 5.84915 5.89966 6.02481 6.32579 6.53807 6.73350 7.27149 7.61449 7.94705 8.42285 8.49662 9.17886 10.80866 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.051055 B = 0.001567 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.291722 B =17860.408975 C =18076.689241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.530 3.470 12 O -0.521 6.521 13 N -0.737 5.737 14 C 0.123 3.877 15 C -0.129 4.129 16 C 0.063 3.937 17 N -0.681 5.681 18 C 0.135 3.865 19 C 0.053 3.947 20 N -0.457 5.457 21 C 0.039 3.961 22 C -0.257 4.257 23 S 0.117 5.883 24 H 0.271 0.729 25 H 0.097 0.903 26 H 0.097 0.903 27 H 0.400 0.600 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.039 0.961 33 H 0.082 0.918 34 H 0.343 0.657 35 H 0.105 0.895 36 H 0.056 0.944 37 H 0.177 0.823 38 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.351 -24.979 2.937 35.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.316 3.684 12 O -0.395 6.395 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.167 4.167 16 C -0.066 4.066 17 N -0.313 5.313 18 C 0.002 3.998 19 C -0.226 4.226 20 N -0.172 5.172 21 C -0.112 4.112 22 C -0.396 4.396 23 S 0.370 5.630 24 H 0.081 0.919 25 H 0.115 0.885 26 H 0.115 0.885 27 H 0.234 0.766 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.161 0.839 35 H 0.123 0.877 36 H 0.074 0.926 37 H 0.194 0.806 38 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 25.353 -22.906 2.804 34.283 hybrid contribution -0.807 -1.334 0.164 1.568 sum 24.546 -24.240 2.967 34.626 Atomic orbital electron populations 1.69939 1.05919 1.27754 1.48078 1.24713 0.94448 0.98961 0.93169 0.86731 0.81886 0.83268 0.79942 1.19201 1.19945 1.15935 1.22325 0.88285 0.97551 1.58786 0.89379 1.84783 1.09269 1.00134 1.97429 1.23281 0.94033 1.04339 1.05834 1.20286 0.90597 0.82294 0.75230 1.90698 1.58810 1.42241 1.47766 1.45941 1.07446 1.08085 1.77686 1.21183 0.81689 0.94830 1.02469 1.21738 0.95869 0.95481 1.03649 1.21882 0.96106 0.86957 1.01668 1.60386 1.08959 1.11495 1.50494 1.20460 0.90172 0.85992 1.03134 1.26989 1.03581 1.01188 0.90845 1.66243 1.14333 1.05037 1.31568 1.21898 1.01477 0.91437 0.96417 1.27139 1.12533 1.03420 0.96511 1.84100 1.66170 0.99760 1.12972 0.91950 0.88456 0.88462 0.76602 0.91680 0.91421 0.90070 0.91239 0.94324 0.89967 0.83937 0.87655 0.92597 0.80570 0.80445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.60 13.97 55.49 0.78 -25.82 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.83 27.74 -169.99 -4.72 17.11 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.39 6.16 36.01 0.22 -2.17 16 11 C 0.53 9.35 7.85 -10.98 -0.09 9.27 16 12 O -0.52 -11.23 15.86 5.56 0.09 -11.14 16 13 N -0.74 -9.08 5.56 -60.29 -0.33 -9.41 16 14 C 0.12 1.26 5.67 -4.04 -0.02 1.24 16 15 C -0.13 -0.91 5.59 -26.73 -0.15 -1.06 16 16 C 0.06 0.40 5.69 -3.82 -0.02 0.38 16 17 N -0.68 -4.53 6.49 -115.05 -0.75 -5.28 16 18 C 0.13 0.84 6.26 -4.97 -0.03 0.81 16 19 C 0.05 0.39 6.90 -13.46 -0.09 0.30 16 20 N -0.46 -4.20 10.54 -11.86 -0.13 -4.33 16 21 C 0.04 0.27 11.35 -19.18 -0.22 0.05 16 22 C -0.26 -1.39 11.37 29.12 0.33 -1.06 16 23 S 0.12 0.66 23.18 -107.50 -2.49 -1.83 16 24 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 25 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 26 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 27 H 0.40 3.78 8.47 -40.82 -0.35 3.44 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.34 1.99 8.72 -39.29 -0.34 1.65 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.18 0.81 8.06 -52.48 -0.42 0.38 16 38 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 356.28 15.07 5.37 5.37 Total: -1.00 -35.64 356.28 -9.37 -45.01 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -5.34 Total: 0.25 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: 0.15 Total: -4.30 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: -0.43 Total: -44.84 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.72 Total: 17.11 kcal Atomic # 16 Polarization: -2.97 SS G_CDS: -4.49 Total: -7.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.64 -9.37 -45.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154803061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.481 kcal (2) G-P(sol) polarization free energy of solvation -35.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds