Wall clock time and date at job start Tue Mar 31 2020 10:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00086 * 2 1 4 4 H 1.48503 * 109.47038 * 269.99600 * 3 2 1 5 5 H 1.48499 * 109.47415 * 29.99456 * 3 2 1 6 6 H 1.48497 * 109.47415 * 150.00083 * 3 2 1 7 7 C 1.38804 * 120.00225 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99655 * 0.02562 * 7 2 1 9 9 S 1.76201 * 120.00212 * 180.02562 * 7 2 1 10 10 C 1.80996 * 99.99731 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.46914 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00080 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00125 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00189 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.46884 * 179.97438 * 14 13 11 16 16 C 1.53004 * 109.46700 * 179.97438 * 15 14 13 17 17 N 1.46901 * 109.46916 * 179.97438 * 16 15 14 18 18 C 1.46905 * 110.99870 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47066 * 180.02562 * 18 17 16 20 20 N 1.29029 * 124.91415 * 89.69936 * 19 18 17 21 21 C 1.31785 * 117.12192 * 179.81769 * 20 19 18 22 22 C 1.33637 * 114.50243 * 0.46251 * 21 20 19 23 23 S 1.70972 * 124.91937 * 270.00172 * 19 18 17 24 24 H 0.97002 * 119.99671 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47463 * 59.99871 * 10 9 7 26 26 H 1.09005 * 109.47601 * 300.00003 * 10 9 7 27 27 H 0.97006 * 119.99601 * 359.97438 * 13 11 10 28 28 H 1.08993 * 109.46962 * 59.99400 * 14 13 11 29 29 H 1.09005 * 109.46850 * 300.00153 * 14 13 11 30 30 H 1.08995 * 109.47485 * 60.00430 * 15 14 13 31 31 H 1.08996 * 109.47010 * 299.99222 * 15 14 13 32 32 H 1.09004 * 109.46889 * 60.00145 * 16 15 14 33 33 H 1.08995 * 109.47384 * 299.99786 * 16 15 14 34 34 H 1.00901 * 111.00067 * 303.95263 * 17 16 15 35 35 H 1.09001 * 109.46798 * 300.00327 * 18 17 16 36 36 H 1.08998 * 109.46961 * 60.00043 * 18 17 16 37 37 H 1.08004 * 122.74610 * 180.22701 * 21 20 19 38 38 H 1.08001 * 126.03862 * 179.72281 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6528 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2020 0.0012 10 6 4.0865 -2.9845 0.0009 11 6 5.5730 -3.2325 0.0021 12 8 6.3440 -2.2963 0.0025 13 7 6.0457 -4.4947 0.0016 14 6 7.4907 -4.7358 0.0021 15 6 7.7563 -6.2426 0.0020 16 6 9.2655 -6.4943 0.0020 17 7 9.5205 -7.9410 0.0025 18 6 10.9626 -8.2213 0.0031 19 6 11.1846 -9.7119 0.0029 20 7 11.2883 -10.4430 -1.0552 21 6 11.4852 -11.7337 -0.8766 22 6 11.5415 -12.1140 0.4033 23 16 11.3281 -10.6801 1.4048 24 1 -0.4850 0.8401 -0.0004 25 1 3.6439 -3.4314 -0.8893 26 1 3.6433 -3.4318 0.8907 27 1 5.4290 -5.2435 0.0009 28 1 7.9332 -4.2893 0.8925 29 1 7.9341 -4.2882 -0.8874 30 1 7.3138 -6.6895 -0.8882 31 1 7.3131 -6.6897 0.8918 32 1 9.7084 -6.0473 0.8920 33 1 9.7084 -6.0473 -0.8880 34 1 9.0653 -8.3882 0.7841 35 1 11.4176 -7.7865 -0.8869 36 1 11.4170 -7.7860 0.8931 37 1 11.5886 -12.4280 -1.6975 38 1 11.6907 -13.1222 0.7606 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154803061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:56 Heat of formation + Delta-G solvation = -24.268178 kcal Electronic energy + Delta-G solvation = -19549.256112 eV Core-core repulsion = 16257.418908 eV Total energy + Delta-G solvation = -3291.837204 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 315.082 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66047 -40.58794 -37.95963 -36.06610 -34.66822 -33.27851 -31.51983 -30.28387 -28.00705 -27.77270 -25.33598 -23.95681 -22.59840 -21.71763 -20.93985 -19.86569 -18.95504 -17.82347 -17.41080 -17.22105 -17.04269 -16.75151 -16.33391 -16.09920 -15.71232 -15.47124 -14.97587 -14.88152 -14.81484 -14.51357 -14.45378 -13.80809 -13.34553 -13.27022 -13.06863 -12.98990 -12.86518 -12.53156 -12.45348 -12.44232 -11.85894 -11.84739 -11.16627 -11.01162 -10.59957 -10.53151 -10.38747 -10.11963 -9.93384 -9.47081 -8.99126 -8.51071 -6.21958 -0.27806 0.41124 0.77900 0.99988 1.32159 1.47577 1.56797 1.57681 1.84820 2.23219 2.27492 2.72237 2.87240 3.03543 3.33916 3.85922 3.98168 4.05649 4.13872 4.20249 4.24795 4.35158 4.41869 4.48466 4.54449 4.57355 4.64550 4.70616 4.79722 5.17016 5.19419 5.20627 5.45023 5.71146 5.85608 6.11864 6.30182 6.48908 6.81094 6.94163 7.20925 8.61271 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.051055 B = 0.001567 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.291722 B =17860.408975 C =18076.689241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.112 4.112 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.712 5.712 14 C 0.122 3.878 15 C -0.114 4.114 16 C 0.067 3.933 17 N -0.690 5.690 18 C 0.136 3.864 19 C 0.034 3.966 20 N -0.494 5.494 21 C 0.016 3.984 22 C -0.251 4.251 23 S 0.145 5.855 24 H 0.277 0.723 25 H 0.113 0.887 26 H 0.115 0.885 27 H 0.417 0.583 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.048 0.952 33 H 0.077 0.923 34 H 0.348 0.652 35 H 0.096 0.904 36 H 0.074 0.926 37 H 0.191 0.809 38 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.724 -26.336 3.716 37.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.263 4.263 11 C 0.319 3.681 12 O -0.443 6.443 13 N -0.366 5.366 14 C -0.002 4.002 15 C -0.153 4.153 16 C -0.062 4.062 17 N -0.323 5.323 18 C 0.004 3.996 19 C -0.244 4.244 20 N -0.210 5.210 21 C -0.134 4.134 22 C -0.391 4.391 23 S 0.398 5.602 24 H 0.086 0.914 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.254 0.746 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.208 0.792 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 26.720 -24.324 3.587 36.311 hybrid contribution -1.190 -1.135 -0.059 1.645 sum 25.530 -25.459 3.528 36.227 Atomic orbital electron populations 1.70016 1.07308 1.29017 1.49123 1.25565 0.95270 1.02258 0.92857 0.85861 0.80679 0.79581 0.80207 1.18732 1.18298 1.16063 1.22474 0.90281 0.96721 1.58309 0.91944 1.84706 1.06404 1.06350 1.97593 1.23281 0.95981 0.99518 1.07505 1.19959 0.89374 0.83459 0.75317 1.90688 1.59346 1.43919 1.50378 1.45741 1.08956 1.06737 1.75166 1.21325 0.79807 0.97068 1.01971 1.21599 0.96548 0.92842 1.04283 1.21811 0.95462 0.87003 1.01970 1.60330 1.09415 1.11535 1.51001 1.20469 0.89972 0.85636 1.03557 1.27169 1.04011 1.01767 0.91483 1.66247 1.15509 1.06238 1.32990 1.22199 1.02383 0.91169 0.97674 1.27511 1.10924 1.04596 0.96029 1.83952 1.65312 0.99254 1.11705 0.91372 0.86872 0.86722 0.74576 0.91934 0.92269 0.90187 0.89804 0.93336 0.90459 0.83353 0.88550 0.90823 0.79207 0.77866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.85 13.97 21.65 0.30 -55.55 16 2 C 0.05 2.70 5.50 84.86 0.47 3.17 16 3 Si 0.91 45.05 27.74 68.60 1.90 46.96 16 4 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.24 -11.63 6.74 99.48 0.67 -10.96 16 7 C -0.53 -30.92 10.04 67.96 0.68 -30.24 16 8 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 9 S -0.18 -8.95 18.55 -56.49 -1.05 -10.00 16 10 C -0.11 -4.16 6.16 71.24 0.44 -3.72 16 11 C 0.53 18.01 7.85 87.66 0.69 18.69 16 12 O -0.56 -23.96 15.86 -3.03 -0.05 -24.01 16 13 N -0.71 -15.88 5.56 -463.06 -2.57 -18.45 16 14 C 0.12 2.26 5.67 86.38 0.49 2.75 16 15 C -0.11 -1.33 5.59 30.59 0.17 -1.16 16 16 C 0.07 0.72 5.69 86.30 0.49 1.21 16 17 N -0.69 -8.05 6.49 -517.92 -3.36 -11.42 16 18 C 0.14 1.54 6.26 85.55 0.54 2.08 16 19 C 0.03 0.47 6.90 88.52 0.61 1.08 16 20 N -0.49 -8.87 10.54 -191.45 -2.02 -10.88 16 21 C 0.02 0.21 11.35 83.66 0.95 1.16 16 22 C -0.25 -2.27 11.37 66.78 0.76 -1.51 16 23 S 0.14 1.38 23.18 -56.49 -1.31 0.07 16 24 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 26 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 27 H 0.42 6.60 8.47 -92.70 -0.79 5.81 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.35 3.34 8.72 -89.69 -0.78 2.55 16 35 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 38 H 0.20 0.58 8.06 -2.91 -0.02 0.56 16 Total: -1.00 -77.40 356.28 -2.39 -79.79 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -0.52 Total: 9.98 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: 6.28 Total: -6.49 kcal Atomic # 7 Polarization: -88.65 SS G_CDS: -7.65 Total: -96.30 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.05 Total: -24.01 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.96 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -2.36 Total: -9.93 kcal Total: -77.40 -2.39 -79.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154803061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.526 kcal (2) G-P(sol) polarization free energy of solvation -77.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds