Wall clock time and date at job start Tue Mar 31 2020 10:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48498 * 109.47178 * 269.99935 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99550 * 3 2 1 6 6 H 1.48496 * 109.47191 * 149.99441 * 3 2 1 7 7 C 1.37884 * 120.00132 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85280 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53917 * 231.32755 * 8 7 2 10 10 C 1.52961 * 109.40365 * 305.37305 * 9 8 7 11 11 H 1.08999 * 109.41376 * 303.48969 * 10 9 8 12 12 N 1.46900 * 109.41289 * 183.69977 * 10 9 8 13 13 C 1.46901 * 110.99914 * 84.64699 * 12 10 9 14 14 H 1.08998 * 109.46850 * 315.00035 * 13 12 10 15 15 F 1.39905 * 109.47025 * 74.99699 * 13 12 10 16 16 O 1.42901 * 109.47287 * 194.99591 * 13 12 10 17 17 C 1.35673 * 117.00205 * 300.00317 * 16 13 12 18 18 C 1.39073 * 120.06461 * 179.97438 * 17 16 13 19 19 N 1.31991 * 119.95200 * 179.97438 * 18 17 16 20 20 C 1.32201 * 120.08198 * 0.02562 * 19 18 17 21 21 C 1.38372 * 120.12493 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 119.97448 * 179.97438 * 21 20 19 23 23 N 1.32325 * 120.04662 * 359.70730 * 21 20 19 24 24 C 1.52966 * 109.81494 * 63.59567 * 10 9 8 25 25 C 1.51270 * 120.84496 * 0.02562 * 7 2 1 26 26 H 0.97000 * 119.99756 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.62703 * 351.04265 * 8 7 2 28 28 H 1.08997 * 109.62844 * 111.42178 * 8 7 2 29 29 H 1.08994 * 109.48658 * 185.38961 * 9 8 7 30 30 H 1.09008 * 109.48138 * 65.35034 * 9 8 7 31 31 H 1.00899 * 110.99825 * 208.59833 * 12 10 9 32 32 H 1.08002 * 120.02507 * 359.95679 * 18 17 16 33 33 H 1.08001 * 119.93968 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.48191 * 56.38593 * 24 10 9 35 35 H 1.09001 * 109.48001 * 176.40844 * 24 10 9 36 36 H 1.08999 * 109.63158 * 8.95697 * 25 7 2 37 37 H 1.09000 * 109.62411 * 248.38769 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9911 -2.1318 -1.1327 10 6 3.3402 -3.5077 -0.9811 11 1 3.5738 -3.9124 0.0037 12 7 3.8619 -4.4112 -2.0151 13 6 5.1277 -5.0234 -1.5895 14 1 5.7716 -4.2601 -1.1528 15 9 4.8689 -6.0156 -0.6376 16 8 5.7788 -5.6063 -2.7201 17 6 5.1072 -6.5811 -3.3830 18 6 5.6813 -7.1916 -4.4928 19 7 5.0261 -8.1401 -5.1357 20 6 3.8247 -8.5099 -4.7262 21 6 3.2500 -7.9039 -3.6230 22 17 1.6719 -8.3922 -3.0891 23 7 3.9046 -6.9562 -2.9716 24 6 1.8232 -3.3832 -1.1328 25 6 1.2676 -2.5152 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 3.8982 -0.2080 -0.1588 28 1 3.8772 -1.5967 0.9571 29 1 5.0751 -2.2354 -1.0872 30 1 3.7071 -1.6990 -2.0921 31 1 3.1818 -5.1168 -2.2554 32 1 6.6624 -6.8897 -4.8286 33 1 3.2908 -9.2865 -5.2538 34 1 1.5906 -2.9210 -2.0921 35 1 1.3709 -4.3739 -1.0876 36 1 0.2037 -2.3410 -0.1597 37 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:03 Heat of formation + Delta-G solvation = -47.686551 kcal Electronic energy + Delta-G solvation = -24322.020705 eV Core-core repulsion = 20460.911121 eV Total energy + Delta-G solvation = -3861.109584 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -47.80434 -41.62821 -38.73865 -37.41592 -37.09324 -34.45955 -33.80398 -31.52451 -30.97451 -29.73747 -27.23526 -25.65139 -24.83502 -23.48769 -21.60376 -21.51825 -19.45486 -18.89596 -18.65535 -17.30741 -17.05158 -16.46643 -16.12376 -15.96507 -15.73421 -14.82773 -14.46491 -14.26042 -13.54694 -13.49682 -13.36220 -12.95454 -12.70904 -12.52676 -12.39880 -12.28678 -12.15670 -11.81730 -11.70858 -11.48537 -11.04465 -10.97248 -10.89123 -10.52562 -10.29380 -10.01527 -9.75213 -9.59363 -9.15673 -8.98336 -8.82823 -8.52655 -8.47455 -6.12123 -4.03140 0.26368 0.61647 1.27814 2.39759 3.13821 3.25768 3.34548 3.35388 3.63329 3.86318 3.95875 4.17267 4.36526 4.50322 4.70196 4.88955 4.93881 5.16239 5.49362 5.61533 5.73637 6.07986 6.38032 6.47730 6.51937 6.61066 6.63752 6.68993 6.83896 6.99372 7.03004 7.16921 7.23312 7.39670 7.50814 7.62930 7.70964 7.81168 8.36009 8.94334 9.52402 10.97570 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003630 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.584894 B = 7712.605323 C = 8458.975594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.076 3.924 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.267 1.267 7 C -0.489 4.489 8 C -0.016 4.016 9 C -0.096 4.096 10 C 0.100 3.900 11 H 0.045 0.955 12 N -0.707 5.707 13 C 0.410 3.590 14 H 0.161 0.839 15 F -0.222 7.222 16 O -0.293 6.293 17 C 0.310 3.690 18 C 0.045 3.955 19 N -0.387 5.387 20 C 0.026 3.974 21 C 0.171 3.829 22 Cl -0.004 7.004 23 N -0.486 5.486 24 C -0.106 4.106 25 C 0.013 3.987 26 H 0.264 0.736 27 H 0.032 0.968 28 H 0.016 0.984 29 H 0.029 0.971 30 H 0.061 0.939 31 H 0.362 0.638 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.060 0.940 37 H 0.003 0.997 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.221 -15.695 -8.231 19.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.127 4.127 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.192 1.192 7 C -0.508 4.508 8 C -0.054 4.054 9 C -0.134 4.134 10 C -0.007 4.007 11 H 0.063 0.937 12 N -0.351 5.351 13 C 0.246 3.754 14 H 0.177 0.823 15 F -0.205 7.205 16 O -0.198 6.198 17 C 0.127 3.873 18 C -0.118 4.118 19 N -0.101 5.101 20 C -0.133 4.133 21 C 0.004 3.996 22 Cl 0.025 6.975 23 N -0.217 5.217 24 C -0.144 4.144 25 C -0.025 4.025 26 H 0.074 0.926 27 H 0.051 0.949 28 H 0.034 0.966 29 H 0.047 0.953 30 H 0.080 0.920 31 H 0.187 0.813 32 H 0.204 0.796 33 H 0.200 0.800 34 H 0.077 0.923 35 H 0.049 0.951 36 H 0.078 0.922 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 9.470 -15.043 -8.538 19.720 hybrid contribution -0.279 0.302 0.901 0.990 sum 9.192 -14.741 -7.637 18.977 Atomic orbital electron populations 1.69834 1.06186 1.26962 1.49711 1.24850 0.94717 0.98597 0.94496 0.86650 0.79904 0.83271 0.78459 1.20368 1.21657 1.19229 1.20006 0.89287 0.91447 1.50039 1.19759 0.96839 0.95193 0.93627 1.21653 0.95926 0.94437 1.01389 1.21537 0.96801 0.91977 0.90401 0.93728 1.61462 1.06860 1.23422 1.43331 1.23837 0.93439 0.82934 0.75181 0.82285 1.93006 1.94863 1.66554 1.66034 1.86725 1.43180 1.47500 1.42361 1.20812 0.87492 0.88308 0.90670 1.23062 1.02269 0.94438 0.92057 1.68592 1.06080 1.09489 1.25976 1.23420 0.92926 1.01734 0.95241 1.22675 0.90544 0.93428 0.92913 1.98460 1.20296 1.88637 1.90149 1.67359 1.07874 1.15067 1.31442 1.21792 0.91724 0.98391 1.02494 1.19344 0.98771 0.92833 0.91556 0.92567 0.94948 0.96587 0.95264 0.92034 0.81306 0.79630 0.80036 0.92290 0.95115 0.92172 0.97824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.45 12.73 55.43 0.71 -24.74 16 2 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 3 Si 0.89 20.92 27.27 -169.99 -4.64 16.29 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.27 -6.07 6.46 56.52 0.37 -5.71 16 7 C -0.49 -12.71 5.51 -98.92 -0.55 -13.25 16 8 C -0.02 -0.37 5.59 -27.49 -0.15 -0.52 16 9 C -0.10 -1.89 5.44 -26.63 -0.14 -2.03 16 10 C 0.10 1.90 2.33 -67.75 -0.16 1.75 16 11 H 0.04 0.87 7.68 -51.93 -0.40 0.48 16 12 N -0.71 -11.81 6.17 -111.10 -0.69 -12.50 16 13 C 0.41 5.97 4.36 60.07 0.26 6.24 16 14 H 0.16 2.03 7.12 -51.93 -0.37 1.66 16 15 F -0.22 -3.57 16.27 2.25 0.04 -3.54 16 16 O -0.29 -3.88 10.39 -18.72 -0.19 -4.07 16 17 C 0.31 3.94 7.12 -16.94 -0.12 3.82 16 18 C 0.05 0.46 11.18 -17.17 -0.19 0.27 16 19 N -0.39 -3.97 10.49 -12.90 -0.14 -4.11 16 20 C 0.03 0.25 11.00 -17.34 -0.19 0.06 16 21 C 0.17 1.96 7.28 -17.29 -0.13 1.84 16 22 Cl 0.00 -0.04 29.13 -51.86 -1.51 -1.55 16 23 N -0.49 -6.64 6.81 -10.24 -0.07 -6.71 16 24 C -0.11 -2.25 5.24 -26.65 -0.14 -2.39 16 25 C 0.01 0.32 5.97 -27.50 -0.16 0.15 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.03 0.73 4.78 -51.93 -0.25 0.48 16 28 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.03 0.50 7.27 -51.93 -0.38 0.12 16 30 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 31 H 0.36 6.20 6.08 -39.29 -0.24 5.96 16 32 H 0.19 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.18 1.13 8.06 -52.49 -0.42 0.70 16 34 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 35 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 36 H 0.06 1.63 7.07 -51.93 -0.37 1.27 16 37 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 LS Contribution 321.45 15.07 4.84 4.84 Total: -1.00 -28.95 321.45 -7.54 -36.49 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -4.13 Total: 1.71 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -1.77 Total: -2.11 kcal Atomic # 7 Polarization: -47.87 SS G_CDS: -0.18 Total: -48.06 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.19 Total: -4.07 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.04 Total: -3.54 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.64 Total: 16.29 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.51 Total: -1.55 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.95 -7.54 -36.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.201 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds