Wall clock time and date at job start Tue Mar 31 2020 10:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 120.00377 * 2 1 4 4 H 1.48498 * 109.47178 * 269.99935 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99550 * 3 2 1 6 6 H 1.48496 * 109.47191 * 149.99441 * 3 2 1 7 7 C 1.37884 * 120.00132 * 179.97438 * 2 1 3 8 8 C 1.51260 * 120.85280 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53917 * 231.32755 * 8 7 2 10 10 C 1.52961 * 109.40365 * 305.37305 * 9 8 7 11 11 H 1.08999 * 109.41376 * 303.48969 * 10 9 8 12 12 N 1.46900 * 109.41289 * 183.69977 * 10 9 8 13 13 C 1.46901 * 110.99914 * 84.64699 * 12 10 9 14 14 H 1.08998 * 109.46850 * 315.00035 * 13 12 10 15 15 F 1.39905 * 109.47025 * 74.99699 * 13 12 10 16 16 O 1.42901 * 109.47287 * 194.99591 * 13 12 10 17 17 C 1.35673 * 117.00205 * 300.00317 * 16 13 12 18 18 C 1.39073 * 120.06461 * 179.97438 * 17 16 13 19 19 N 1.31991 * 119.95200 * 179.97438 * 18 17 16 20 20 C 1.32201 * 120.08198 * 0.02562 * 19 18 17 21 21 C 1.38372 * 120.12493 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 119.97448 * 179.97438 * 21 20 19 23 23 N 1.32325 * 120.04662 * 359.70730 * 21 20 19 24 24 C 1.52966 * 109.81494 * 63.59567 * 10 9 8 25 25 C 1.51270 * 120.84496 * 0.02562 * 7 2 1 26 26 H 0.97000 * 119.99756 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.62703 * 351.04265 * 8 7 2 28 28 H 1.08997 * 109.62844 * 111.42178 * 8 7 2 29 29 H 1.08994 * 109.48658 * 185.38961 * 9 8 7 30 30 H 1.09008 * 109.48138 * 65.35034 * 9 8 7 31 31 H 1.00899 * 110.99825 * 208.59833 * 12 10 9 32 32 H 1.08002 * 120.02507 * 359.95679 * 18 17 16 33 33 H 1.08001 * 119.93968 * 180.02562 * 20 19 18 34 34 H 1.08997 * 109.48191 * 56.38593 * 24 10 9 35 35 H 1.09001 * 109.48001 * 176.40844 * 24 10 9 36 36 H 1.08999 * 109.63158 * 8.95697 * 25 7 2 37 37 H 1.09000 * 109.62411 * 248.38769 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9911 -2.1318 -1.1327 10 6 3.3402 -3.5077 -0.9811 11 1 3.5738 -3.9124 0.0037 12 7 3.8619 -4.4112 -2.0151 13 6 5.1277 -5.0234 -1.5895 14 1 5.7716 -4.2601 -1.1528 15 9 4.8689 -6.0156 -0.6376 16 8 5.7788 -5.6063 -2.7201 17 6 5.1072 -6.5811 -3.3830 18 6 5.6813 -7.1916 -4.4928 19 7 5.0261 -8.1401 -5.1357 20 6 3.8247 -8.5099 -4.7262 21 6 3.2500 -7.9039 -3.6230 22 17 1.6719 -8.3922 -3.0891 23 7 3.9046 -6.9562 -2.9716 24 6 1.8232 -3.3832 -1.1328 25 6 1.2676 -2.5152 0.0005 26 1 -0.4850 0.8401 -0.0004 27 1 3.8982 -0.2080 -0.1588 28 1 3.8772 -1.5967 0.9571 29 1 5.0751 -2.2354 -1.0872 30 1 3.7071 -1.6990 -2.0921 31 1 3.1818 -5.1168 -2.2554 32 1 6.6624 -6.8897 -4.8286 33 1 3.2908 -9.2865 -5.2538 34 1 1.5906 -2.9210 -2.0921 35 1 1.3709 -4.3739 -1.0876 36 1 0.2037 -2.3410 -0.1597 37 1 1.4192 -3.0189 0.9552 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:03 Heat of formation + Delta-G solvation = -68.968559 kcal Electronic energy + Delta-G solvation = -24322.943562 eV Core-core repulsion = 20460.911121 eV Total energy + Delta-G solvation = -3862.032441 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 315.089 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.98416 -42.48123 -39.78129 -38.95996 -37.93131 -35.49745 -35.32036 -33.20761 -31.95572 -31.50868 -28.87771 -26.76374 -25.69543 -24.64095 -23.37750 -23.20338 -21.05920 -19.98444 -19.61748 -18.30048 -18.02177 -17.95580 -17.50781 -16.94112 -16.74299 -16.40228 -15.91634 -15.59048 -15.19022 -14.61744 -14.44444 -14.38773 -14.18190 -14.00173 -13.90736 -13.39313 -13.31837 -13.11644 -12.96044 -12.73462 -12.71557 -12.53976 -12.33029 -12.01357 -11.87291 -11.84418 -11.40409 -10.89176 -10.61385 -10.56186 -10.54343 -10.04313 -9.94309 -8.16768 -6.11211 -0.54892 -0.23746 0.45736 1.39986 1.42490 1.43855 1.51408 2.30650 2.41654 2.68233 2.86759 3.11661 3.16806 3.20566 3.43284 3.78452 3.88083 4.05081 4.11319 4.24214 4.45597 4.72256 4.76376 4.87487 4.94771 4.97562 5.09158 5.16330 5.26058 5.54307 5.59026 5.60371 5.72737 5.75171 5.79802 5.87713 6.10303 6.34378 6.35870 6.95015 7.46924 8.94595 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.020681 B = 0.003630 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1353.584894 B = 7712.605323 C = 8458.975594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.019 3.981 3 Si 0.944 3.056 4 H -0.274 1.274 5 H -0.295 1.295 6 H -0.249 1.249 7 C -0.500 4.500 8 C -0.019 4.019 9 C -0.089 4.089 10 C 0.112 3.888 11 H 0.043 0.957 12 N -0.706 5.706 13 C 0.409 3.591 14 H 0.182 0.818 15 F -0.233 7.233 16 O -0.289 6.289 17 C 0.283 3.717 18 C 0.060 3.940 19 N -0.394 5.394 20 C 0.043 3.957 21 C 0.153 3.847 22 Cl -0.005 7.005 23 N -0.512 5.512 24 C -0.095 4.095 25 C 0.010 3.990 26 H 0.262 0.738 27 H 0.036 0.964 28 H 0.023 0.977 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.359 0.641 32 H 0.216 0.784 33 H 0.214 0.786 34 H 0.043 0.957 35 H 0.040 0.960 36 H 0.025 0.975 37 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.780 -16.481 -9.314 22.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.179 4.179 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.221 1.221 6 H -0.173 1.173 7 C -0.519 4.519 8 C -0.057 4.057 9 C -0.127 4.127 10 C 0.004 3.996 11 H 0.061 0.939 12 N -0.349 5.349 13 C 0.246 3.754 14 H 0.199 0.801 15 F -0.215 7.215 16 O -0.194 6.194 17 C 0.101 3.899 18 C -0.103 4.103 19 N -0.109 5.109 20 C -0.116 4.116 21 C -0.013 4.013 22 Cl 0.023 6.977 23 N -0.244 5.244 24 C -0.133 4.133 25 C -0.028 4.028 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.184 0.816 32 H 0.233 0.767 33 H 0.231 0.769 34 H 0.062 0.938 35 H 0.059 0.941 36 H 0.044 0.956 37 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 12.057 -15.857 -9.633 22.127 hybrid contribution -1.113 0.395 1.201 1.684 sum 10.944 -15.463 -8.432 20.736 Atomic orbital electron populations 1.69985 1.07849 1.27471 1.52094 1.25667 0.95362 1.02026 0.94828 0.85753 0.79296 0.79296 0.78622 1.19947 1.22149 1.17342 1.20651 0.91478 0.91548 1.48208 1.19788 0.94419 0.96328 0.95163 1.21528 0.98144 0.93735 0.99337 1.21228 0.94802 0.92509 0.91040 0.93912 1.61367 1.07662 1.23496 1.42383 1.24012 0.92557 0.83270 0.75540 0.80119 1.92987 1.94939 1.67039 1.66514 1.86711 1.42809 1.47922 1.41994 1.21111 0.87824 0.89159 0.91836 1.23543 1.02965 0.93209 0.90567 1.68732 1.06388 1.09716 1.26020 1.23930 0.92472 1.01125 0.94024 1.22888 0.90767 0.93867 0.93756 1.98457 1.20330 1.88595 1.90272 1.67219 1.08652 1.15998 1.32487 1.21571 0.93903 0.97891 0.99977 1.19288 0.97065 0.93751 0.92688 0.92879 0.94587 0.95893 0.91597 0.93213 0.81577 0.76708 0.76913 0.93778 0.94093 0.95598 0.98295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 12.73 21.45 0.27 -54.95 16 2 C 0.02 1.04 5.46 84.66 0.46 1.51 16 3 Si 0.94 42.83 27.27 68.60 1.87 44.70 16 4 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 6 H -0.25 -10.48 6.46 99.48 0.64 -9.84 16 7 C -0.50 -26.06 5.51 -16.17 -0.09 -26.15 16 8 C -0.02 -0.82 5.59 30.10 0.17 -0.66 16 9 C -0.09 -3.30 5.44 30.66 0.17 -3.14 16 10 C 0.11 4.10 2.33 44.89 0.10 4.21 16 11 H 0.04 1.60 7.68 -2.39 -0.02 1.58 16 12 N -0.71 -22.34 6.17 -605.63 -3.74 -26.08 16 13 C 0.41 10.99 4.36 127.69 0.56 11.55 16 14 H 0.18 3.98 7.12 -2.39 -0.02 3.97 16 15 F -0.23 -7.09 16.27 44.97 0.73 -6.35 16 16 O -0.29 -6.98 10.39 -89.90 -0.93 -7.92 16 17 C 0.28 6.63 7.12 84.79 0.60 7.24 16 18 C 0.06 1.06 11.18 84.87 0.95 2.01 16 19 N -0.39 -7.00 10.49 -194.71 -2.04 -9.04 16 20 C 0.04 0.72 11.00 84.67 0.93 1.65 16 21 C 0.15 3.30 7.28 84.65 0.62 3.91 16 22 Cl 0.00 -0.10 29.13 -2.72 -0.08 -0.18 16 23 N -0.51 -13.29 6.81 -299.05 -2.04 -15.33 16 24 C -0.10 -4.06 5.24 30.65 0.16 -3.90 16 25 C 0.01 0.51 5.97 30.09 0.18 0.69 16 26 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 27 H 0.04 1.53 4.78 -2.38 -0.01 1.52 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 1.98 7.27 -2.39 -0.02 1.97 16 30 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.36 11.91 6.08 -89.69 -0.54 11.37 16 32 H 0.22 2.32 8.06 -2.91 -0.02 2.30 16 33 H 0.21 1.97 8.06 -2.91 -0.02 1.95 16 34 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.63 8.05 -2.39 -0.02 1.61 16 36 H 0.03 1.46 7.07 -2.39 -0.02 1.44 16 37 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -63.18 321.45 -0.63 -63.81 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.52 Total: 12.42 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 4.81 Total: -1.08 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -7.54 Total: -105.40 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -0.93 Total: -7.92 kcal Atomic # 9 Polarization: -7.09 SS G_CDS: 0.73 Total: -6.35 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 1.87 Total: 44.70 kcal Atomic # 17 Polarization: -0.10 SS G_CDS: -0.08 Total: -0.18 kcal Total: -63.18 -0.63 -63.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.162 kcal (2) G-P(sol) polarization free energy of solvation -63.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds