Wall clock time and date at job start Tue Mar 31 2020 11:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47308 * 2 1 4 4 S 1.81404 * 109.47175 * 120.00243 * 2 1 3 5 5 C 1.76201 * 102.99829 * 175.00062 * 4 2 1 6 6 C 1.39646 * 120.07954 * 179.97438 * 5 4 2 7 7 C 1.38327 * 117.96434 * 180.02562 * 6 5 4 8 8 C 1.39606 * 117.97279 * 359.97438 * 7 6 5 9 9 N 1.39459 * 120.06381 * 180.02562 * 8 7 6 10 10 C 1.38325 * 120.00028 * 356.72116 * 9 8 7 11 11 C 1.38998 * 119.99930 * 298.66254 * 10 9 8 12 12 H 1.07998 * 119.99959 * 154.56533 * 11 10 9 13 13 C 1.40833 * 120.00102 * 334.57454 * 11 10 9 14 14 N 1.30333 * 120.00179 * 163.15934 * 13 11 10 15 15 Si 1.86804 * 119.99907 * 343.15703 * 13 11 10 16 16 H 1.48500 * 109.46885 * 88.48004 * 15 13 11 17 17 H 1.48499 * 109.47102 * 208.47817 * 15 13 11 18 18 H 1.48500 * 109.47177 * 328.48129 * 15 13 11 19 19 C 1.41151 * 119.99976 * 118.66757 * 10 9 8 20 20 C 1.43207 * 120.00024 * 184.87755 * 19 10 9 21 21 N 9.51671 * 154.81717 * 336.38598 * 4 1 2 22 22 C 1.43202 * 120.00406 * 4.87189 * 19 10 9 23 23 N 8.84105 * 155.71040 * 201.41224 * 2 1 3 24 24 N 1.32282 * 119.86785 * 0.02562 * 8 7 6 25 25 N 1.28346 * 122.19096 * 359.97438 * 24 8 7 26 26 H 1.08996 * 109.47162 * 300.00040 * 1 2 3 27 27 H 1.09005 * 109.46920 * 59.99822 * 1 2 3 28 28 H 1.09004 * 109.47041 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47055 * 239.99694 * 2 1 3 30 30 H 1.09005 * 109.47313 * 59.99851 * 3 2 1 31 31 H 1.08998 * 109.47552 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.47276 * 299.99960 * 3 2 1 33 33 H 1.08001 * 121.01509 * 0.03436 * 6 5 4 34 34 H 1.07999 * 121.01370 * 180.02562 * 7 6 5 35 35 H 0.96997 * 120.00112 * 176.71904 * 9 8 7 36 36 H 0.97007 * 120.00059 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 16 2.1347 -0.8552 1.4811 5 6 3.8793 -0.8865 1.2361 6 6 4.7096 -1.4782 2.1905 7 6 6.0725 -1.4778 1.9541 8 6 6.5327 -0.8865 0.7762 9 7 7.8982 -0.8622 0.4938 10 6 8.8033 -1.3633 1.4119 11 6 8.8988 -0.7931 2.6760 12 1 9.2615 -1.3799 3.5070 13 6 8.5223 0.5495 2.8732 14 7 8.2948 0.9925 4.0776 15 14 8.3491 1.6958 1.4083 16 1 6.9657 1.6120 0.8752 17 1 8.6318 3.0899 1.8345 18 1 9.3122 1.2965 0.3508 19 6 9.6301 -2.4535 1.0651 20 6 10.4921 -3.0393 2.0473 21 7 11.1757 -3.5046 2.8257 22 6 9.6069 -2.9739 -0.2688 23 7 9.5884 -3.3857 -1.3277 24 7 5.6709 -0.3493 -0.0716 25 7 4.4062 -0.3493 0.1471 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 4.3000 -1.9226 3.0856 34 1 6.7596 -1.9222 2.6589 35 1 8.2132 -0.4939 -0.3465 36 1 8.0359 1.9174 4.2135 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158214013.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:52 Heat of formation + Delta-G solvation = 112.220656 kcal Electronic energy + Delta-G solvation = -22818.515022 eV Core-core repulsion = 19429.445218 eV Total energy + Delta-G solvation = -3389.069805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.79421 -38.00538 -35.54039 -34.91045 -34.87054 -34.23309 -32.85217 -31.99281 -29.52218 -27.53824 -27.32162 -24.51330 -24.00498 -21.88219 -21.43375 -19.40919 -18.39205 -17.68396 -17.50666 -16.56542 -16.47946 -15.93949 -15.53303 -14.97019 -14.60368 -13.89591 -13.48739 -13.44334 -13.28440 -13.17470 -12.90281 -12.73531 -12.43321 -12.35748 -12.19222 -11.86474 -11.78332 -11.70179 -11.56198 -11.51801 -11.32478 -11.14323 -10.89477 -10.79354 -10.58471 -10.28477 -10.12085 -10.02667 -9.40722 -8.93796 -8.17191 -7.97108 -7.23659 -5.62780 1.09299 1.15165 1.43960 1.81629 2.19671 2.63678 2.71482 2.76286 3.22050 3.33836 3.69146 3.77690 3.90427 4.01499 4.15429 4.66136 4.68640 4.75193 4.82716 4.92482 4.96730 5.14636 5.23506 5.32781 5.42724 5.51485 5.68664 5.74802 5.79061 5.89633 5.95678 5.99066 6.20940 6.23626 6.28841 6.78419 6.99736 7.25733 7.46620 7.65131 7.91391 8.76335 8.93135 8.95109 8.97067 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015880 B = 0.004383 C = 0.004027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.767035 B = 6386.278005 C = 6950.554286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 C -0.149 4.149 4 S -0.072 6.072 5 C 0.010 3.990 6 C -0.070 4.070 7 C -0.127 4.127 8 C 0.350 3.650 9 N -0.661 5.661 10 C 0.333 3.667 11 C -0.355 4.355 12 H 0.128 0.872 13 C 0.075 3.925 14 N -0.716 5.716 15 Si 0.911 3.089 16 H -0.244 1.244 17 H -0.280 1.280 18 H -0.246 1.246 19 C -0.291 4.291 20 C 0.322 3.678 21 N -0.520 5.520 22 C 0.304 3.696 23 N -0.523 5.523 24 N -0.293 5.293 25 N -0.215 5.215 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.151 0.849 34 H 0.169 0.831 35 H 0.411 0.589 36 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.927 6.029 -0.764 16.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.199 4.199 3 C -0.208 4.208 4 S 0.162 5.838 5 C -0.250 4.250 6 C -0.102 4.102 7 C -0.160 4.160 8 C 0.108 3.892 9 N -0.293 5.293 10 C 0.230 3.770 11 C -0.382 4.382 12 H 0.145 0.855 13 C -0.159 4.159 14 N -0.333 5.333 15 Si 0.734 3.266 16 H -0.168 1.168 17 H -0.206 1.206 18 H -0.169 1.169 19 C -0.309 4.309 20 C 0.013 3.987 21 N -0.201 5.201 22 C -0.003 4.003 23 N -0.205 5.205 24 N -0.144 5.144 25 N -0.059 5.059 26 H 0.083 0.917 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.169 0.831 34 H 0.187 0.813 35 H 0.250 0.750 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.810 5.160 -1.399 15.746 hybrid contribution 0.930 0.823 -0.256 1.268 sum -13.880 5.983 -1.655 15.205 Atomic orbital electron populations 1.21653 0.91929 1.02853 1.02925 1.23186 0.98766 0.99675 0.98257 1.22094 1.03387 0.93347 1.01958 1.85250 0.94201 1.73378 1.30932 1.24207 1.00053 1.03752 0.97029 1.21748 0.92428 0.97040 0.98993 1.22164 0.96188 0.99988 0.97701 1.19750 0.86127 0.91735 0.91610 1.41832 1.01285 1.64671 1.21535 1.16807 0.85766 0.88134 0.86273 1.20161 1.26916 0.95598 0.95558 0.85471 1.26706 0.90674 0.99812 0.98660 1.69394 1.20494 1.19447 1.23991 0.86179 0.82479 0.77725 0.80175 1.16824 1.20631 1.16926 1.12722 1.18869 1.13245 0.86052 1.24555 0.90887 0.91402 0.91856 1.81081 1.14956 1.13173 1.10915 1.25159 0.91605 0.91655 0.91929 1.81116 1.13625 1.12831 1.12889 1.72674 0.96559 1.18784 1.26338 1.73158 1.04068 1.12959 1.15730 0.91734 0.90832 0.91712 0.88383 0.92189 0.90463 0.91993 0.83119 0.81327 0.74985 0.88046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 9.20 37.16 0.34 -0.72 16 2 C -0.07 -0.74 2.90 -26.73 -0.08 -0.82 16 3 C -0.15 -1.64 9.03 37.15 0.34 -1.30 16 4 S -0.07 -0.88 21.35 -107.50 -2.30 -3.17 16 5 C 0.01 0.15 6.92 -16.79 -0.12 0.03 16 6 C -0.07 -1.02 9.96 -39.02 -0.39 -1.41 16 7 C -0.13 -2.08 8.82 -39.04 -0.34 -2.42 16 8 C 0.35 6.22 5.41 -154.50 -0.84 5.39 16 9 N -0.66 -11.86 2.27 -9.57 -0.02 -11.89 16 10 C 0.33 6.26 4.50 -83.55 -0.38 5.89 16 11 C -0.36 -6.87 7.18 -38.32 -0.28 -7.15 16 12 H 0.13 2.66 7.29 -52.49 -0.38 2.28 16 13 C 0.07 1.41 5.12 -17.21 -0.09 1.32 16 14 N -0.72 -13.78 13.90 55.59 0.77 -13.01 16 15 Si 0.91 15.83 24.45 -169.99 -4.16 11.68 16 16 H -0.24 -4.40 5.86 56.52 0.33 -4.07 16 17 H -0.28 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.25 -4.23 6.87 56.52 0.39 -3.84 16 19 C -0.29 -5.88 5.88 -104.94 -0.62 -6.49 16 20 C 0.32 6.94 13.95 -22.48 -0.31 6.63 16 21 N -0.52 -11.84 18.54 41.83 0.78 -11.07 16 22 C 0.30 6.46 14.82 -22.46 -0.33 6.13 16 23 N -0.52 -11.73 18.54 41.85 0.78 -10.95 16 24 N -0.29 -5.39 10.97 31.31 0.34 -5.05 16 25 N -0.21 -3.66 8.64 31.48 0.27 -3.39 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 1.14 8.14 -51.92 -0.42 0.72 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 1.06 5.98 -51.93 -0.31 0.75 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.17 2.74 6.18 -52.49 -0.32 2.42 16 35 H 0.41 7.13 8.03 -40.82 -0.33 6.80 16 36 H 0.31 5.34 8.29 -40.82 -0.34 5.00 16 LS Contribution 334.84 15.07 5.05 5.05 Total: -1.00 -24.16 334.84 -5.10 -29.25 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -3.52 Total: 7.48 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -3.09 Total: 5.06 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 2.92 Total: -55.35 kcal Atomic # 14 Polarization: 15.83 SS G_CDS: -4.16 Total: 11.68 kcal Atomic # 16 Polarization: -0.88 SS G_CDS: -2.30 Total: -3.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -24.16 -5.10 -29.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214013.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.475 kcal (2) G-P(sol) polarization free energy of solvation -24.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds