Wall clock time and date at job start Tue Mar 31 2020 11:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47386 * 2 1 4 4 S 1.81402 * 109.47174 * 180.02562 * 3 2 1 5 5 C 1.76201 * 102.99900 * 179.97438 * 4 3 2 6 6 C 1.39269 * 120.04830 * 179.97438 * 5 4 3 7 7 N 1.32005 * 120.06136 * 179.97438 * 6 5 4 8 8 C 1.32096 * 120.18331 * 359.97438 * 7 6 5 9 9 C 1.39105 * 120.09605 * 359.97438 * 8 7 6 10 10 N 1.39146 * 120.03543 * 179.97438 * 9 8 7 11 11 C 1.38383 * 119.99741 * 353.53364 * 10 9 8 12 12 C 1.38971 * 119.99620 * 299.39387 * 11 10 9 13 13 H 1.08002 * 119.99620 * 153.65336 * 12 11 10 14 14 C 1.40843 * 120.00031 * 333.64756 * 12 11 10 15 15 N 1.30337 * 119.99891 * 167.58331 * 14 12 11 16 16 Si 1.86794 * 120.00286 * 347.58037 * 14 12 11 17 17 H 1.48499 * 109.47190 * 85.59555 * 16 14 12 18 18 H 1.48497 * 109.47433 * 205.59414 * 16 14 12 19 19 H 1.48503 * 109.47297 * 325.59768 * 16 14 12 20 20 C 1.41140 * 120.00030 * 119.39643 * 11 10 9 21 21 C 1.43209 * 119.99867 * 174.62199 * 20 11 10 22 22 N 9.69356 * 130.47766 * 175.71663 * 3 1 2 23 23 C 1.43196 * 120.00338 * 354.61975 * 20 11 10 24 24 N 8.30042 * 90.00145 * 338.16756 * 2 1 3 25 25 N 1.32757 * 119.93178 * 0.26702 * 9 8 7 26 26 H 1.09003 * 109.46946 * 299.99820 * 1 2 3 27 27 H 1.08999 * 109.47151 * 59.99936 * 1 2 3 28 28 H 1.08992 * 109.47061 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47253 * 239.99863 * 2 1 3 30 30 H 1.09008 * 109.47178 * 119.99866 * 2 1 3 31 31 H 1.08997 * 109.47036 * 59.99730 * 3 2 1 32 32 H 1.08995 * 109.46611 * 299.99862 * 3 2 1 33 33 H 1.07994 * 119.96863 * 0.02562 * 6 5 4 34 34 H 1.07996 * 119.95735 * 179.97438 * 8 7 6 35 35 H 0.97000 * 120.00191 * 173.79923 * 10 9 8 36 36 H 0.96999 * 120.00029 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 16 3.8541 1.4424 -0.0008 5 6 4.2505 3.1593 -0.0014 6 6 5.5820 3.5676 -0.0016 7 7 5.8792 4.8537 -0.0026 8 6 4.9163 5.7579 -0.0040 9 6 3.5839 5.3581 -0.0049 10 7 2.5706 6.3116 -0.0059 11 6 2.8827 7.6530 0.1291 12 6 3.5313 8.1038 1.2725 13 1 4.1428 8.9930 1.2312 14 6 3.3910 7.4011 2.4850 15 7 4.1769 7.6708 3.4892 16 14 2.0787 6.0826 2.6541 17 1 2.6063 4.7909 2.1459 18 1 1.7050 5.9365 4.0838 19 1 0.8812 6.4722 1.8669 20 6 2.5422 8.5632 -0.8944 21 6 2.7602 9.9661 -0.7067 22 7 2.9328 11.0792 -0.5507 23 6 1.9788 8.0840 -2.1206 24 7 1.5302 7.7051 -3.0869 25 7 3.2802 4.0657 0.0009 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 6.3720 2.8313 -0.0017 34 1 5.1636 6.8092 -0.0044 35 1 1.6451 6.0358 -0.0973 36 1 4.0806 7.1866 4.3242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158214515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:54 Heat of formation + Delta-G solvation = 87.809464 kcal Electronic energy + Delta-G solvation = -22804.284036 eV Core-core repulsion = 19414.155683 eV Total energy + Delta-G solvation = -3390.128353 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.085 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.16926 -39.41801 -37.23837 -36.67996 -35.89561 -35.62291 -35.05546 -32.88754 -30.58309 -29.14993 -28.27181 -25.91535 -25.15053 -23.14360 -22.45485 -21.04207 -19.52909 -19.39310 -18.48341 -18.04661 -17.69535 -17.17010 -16.88513 -16.49607 -16.05559 -15.58212 -14.96622 -14.72372 -14.60502 -14.45665 -14.40523 -14.04823 -13.78178 -13.60214 -13.55752 -13.49442 -13.26309 -12.94126 -12.89714 -12.74725 -12.66633 -12.57324 -12.20441 -12.15065 -11.86441 -11.69186 -11.50310 -11.33279 -10.37223 -10.18179 -9.50725 -9.25593 -8.49062 -7.28343 -0.29166 0.06745 0.29556 0.37090 1.09556 1.18949 1.31045 1.37266 1.78312 1.89658 2.02500 2.18580 2.42839 2.48076 2.67289 3.27609 3.39623 3.44561 3.64059 3.70938 3.87578 3.92201 4.08651 4.33889 4.35395 4.43481 4.52470 4.64766 4.71931 4.85544 5.00949 5.12248 5.17551 5.33209 5.37192 5.39533 5.66474 5.83443 6.06699 6.19492 6.49981 6.80816 7.06520 7.25382 7.50516 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.013129 B = 0.004756 C = 0.004481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.100869 B = 5886.483379 C = 6246.928580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.099 4.099 4 S -0.037 6.037 5 C 0.097 3.903 6 C 0.012 3.988 7 N -0.406 5.406 8 C 0.001 3.999 9 C 0.366 3.634 10 N -0.661 5.661 11 C 0.347 3.653 12 C -0.350 4.350 13 H 0.108 0.892 14 C 0.055 3.945 15 N -0.736 5.736 16 Si 0.953 3.047 17 H -0.244 1.244 18 H -0.281 1.281 19 H -0.244 1.244 20 C -0.293 4.293 21 C 0.327 3.673 22 N -0.545 5.545 23 C 0.317 3.683 24 N -0.542 5.542 25 N -0.504 5.504 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.197 0.803 34 H 0.172 0.828 35 H 0.414 0.586 36 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -19.060 3.127 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.248 4.248 4 S 0.203 5.797 5 C -0.156 4.156 6 C -0.155 4.155 7 N -0.120 5.120 8 C -0.167 4.167 9 C 0.128 3.872 10 N -0.293 5.293 11 C 0.244 3.756 12 C -0.377 4.377 13 H 0.126 0.874 14 C -0.176 4.176 15 N -0.354 5.354 16 Si 0.776 3.224 17 H -0.169 1.169 18 H -0.208 1.208 19 H -0.167 1.167 20 C -0.311 4.311 21 C 0.020 3.980 22 N -0.228 5.228 23 C 0.010 3.990 24 N -0.225 5.225 25 N -0.231 5.231 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.093 0.907 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.103 0.897 33 H 0.213 0.787 34 H 0.189 0.811 35 H 0.254 0.746 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.502 -18.780 2.161 18.964 hybrid contribution -1.387 0.986 0.564 1.793 sum -2.889 -17.795 2.725 18.233 Atomic orbital electron populations 1.21745 0.93653 1.02928 1.02182 1.21324 0.97094 0.92065 1.03891 1.23680 0.92164 1.02766 1.06160 1.85244 1.08836 0.95063 1.90532 1.24319 0.93135 0.99810 0.98301 1.23533 0.95005 0.93527 1.03483 1.68315 1.35217 1.01884 1.06555 1.23338 0.87641 1.01388 1.04328 1.18973 0.88708 0.87364 0.92172 1.41876 1.08116 1.03209 1.76124 1.16537 0.88826 0.79519 0.90730 1.20107 1.18237 1.08096 0.91244 0.87435 1.27166 0.97715 0.98277 0.94478 1.69366 1.29064 1.32614 1.04328 0.85583 0.79480 0.78909 0.78455 1.16866 1.20771 1.16707 1.12717 1.39637 0.84291 0.94485 1.24801 0.90381 0.91360 0.91472 1.81125 1.18317 1.12800 1.10538 1.24954 0.90497 0.92154 0.91412 1.80866 1.18826 1.09644 1.13129 1.68228 1.35396 0.99840 1.19668 0.92564 0.92664 0.90657 0.90282 0.90235 0.89784 0.89725 0.78665 0.81106 0.74610 0.87011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.10 -1.44 5.94 30.59 0.18 -1.25 16 3 C -0.10 -1.92 5.22 71.98 0.38 -1.55 16 4 S -0.04 -0.79 21.92 -56.49 -1.24 -2.03 16 5 C 0.10 2.78 7.00 84.80 0.59 3.38 16 6 C 0.01 0.34 10.97 84.91 0.93 1.28 16 7 N -0.41 -13.76 10.48 -194.05 -2.03 -15.80 16 8 C 0.00 0.05 9.96 84.86 0.85 0.90 16 9 C 0.37 12.74 5.12 132.90 0.68 13.42 16 10 N -0.66 -22.98 2.26 -184.48 -0.42 -23.39 16 11 C 0.35 13.11 4.45 39.00 0.17 13.28 16 12 C -0.35 -13.94 7.21 23.08 0.17 -13.77 16 13 H 0.11 4.74 7.45 -2.91 -0.02 4.72 16 14 C 0.06 2.11 5.28 85.55 0.45 2.56 16 15 N -0.74 -29.15 13.90 21.98 0.31 -28.84 16 16 Si 0.95 31.33 24.31 68.60 1.67 33.00 16 17 H -0.24 -8.10 5.27 99.48 0.52 -7.58 16 18 H -0.28 -9.10 7.11 99.48 0.71 -8.40 16 19 H -0.24 -7.74 6.74 99.48 0.67 -7.07 16 20 C -0.29 -11.87 5.88 -20.07 -0.12 -11.99 16 21 C 0.33 14.37 14.04 88.32 1.24 15.61 16 22 N -0.55 -25.39 18.54 19.02 0.35 -25.04 16 23 C 0.32 13.29 14.80 88.39 1.31 14.60 16 24 N -0.54 -23.86 18.50 18.94 0.35 -23.51 16 25 N -0.50 -16.29 8.62 -188.90 -1.63 -17.92 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 31 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.20 4.20 8.06 -2.91 -0.02 4.18 16 34 H 0.17 6.40 6.20 -2.91 -0.02 6.39 16 35 H 0.41 13.46 7.94 -92.71 -0.74 12.73 16 36 H 0.32 11.18 8.29 -92.71 -0.77 10.41 16 Total: -1.00 -50.27 338.36 5.10 -45.17 By element: Atomic # 1 Polarization: 22.78 SS G_CDS: 0.20 Total: 22.98 kcal Atomic # 6 Polarization: 27.84 SS G_CDS: 7.54 Total: 35.39 kcal Atomic # 7 Polarization: -131.44 SS G_CDS: -3.07 Total: -134.51 kcal Atomic # 14 Polarization: 31.33 SS G_CDS: 1.67 Total: 33.00 kcal Atomic # 16 Polarization: -0.79 SS G_CDS: -1.24 Total: -2.03 kcal Total: -50.27 5.10 -45.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158214515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.975 kcal (2) G-P(sol) polarization free energy of solvation -50.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds