Wall clock time and date at job start Tue Mar 31 2020 10:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31488 * 119.81753 * 2 1 4 4 C 1.32736 * 121.73000 * 179.97438 * 3 2 1 5 5 N 1.38369 * 119.42991 * 179.97438 * 4 3 2 6 6 C 1.48106 * 111.00021 * 120.12428 * 5 4 3 7 7 C 1.51003 * 105.71335 * 213.17447 * 6 5 4 8 8 C 1.37983 * 132.64690 * 197.37550 * 7 6 5 9 9 N 1.31976 * 120.59690 * 180.02562 * 8 7 6 10 10 C 1.31986 * 121.83372 * 359.73658 * 9 8 7 11 11 Cl 1.73605 * 119.63023 * 180.27050 * 10 9 8 12 12 C 1.38487 * 120.73687 * 0.55386 * 10 9 8 13 13 C 1.38240 * 118.92592 * 359.44127 * 12 10 9 14 14 C 1.48125 * 111.00050 * 5.03119 * 5 4 3 15 15 C 1.39710 * 121.14261 * 0.24634 * 4 3 2 16 16 C 1.36564 * 119.48833 * 359.48736 * 15 4 3 17 17 C 1.40754 * 119.81463 * 179.97438 * 2 1 3 18 18 C 1.41199 * 120.57010 * 0.02562 * 17 2 1 19 19 H 1.08003 * 119.99859 * 24.88712 * 18 17 2 20 20 C 1.39870 * 120.00429 * 204.88424 * 18 17 2 21 21 N 1.30906 * 119.99528 * 14.71098 * 20 18 17 22 22 Si 1.86796 * 120.00340 * 194.71182 * 20 18 17 23 23 H 1.48506 * 109.46927 * 90.00199 * 22 20 18 24 24 H 1.48502 * 109.47266 * 209.99601 * 22 20 18 25 25 H 1.48497 * 109.47286 * 330.00229 * 22 20 18 26 26 H 1.08998 * 109.47245 * 90.00328 * 1 2 3 27 27 H 1.08992 * 109.47728 * 210.00786 * 1 2 3 28 28 H 1.09005 * 109.47551 * 330.00704 * 1 2 3 29 29 H 1.08998 * 110.20556 * 94.10830 * 6 5 4 30 30 H 1.09001 * 110.26761 * 332.26324 * 6 5 4 31 31 H 1.08004 * 119.70294 * 0.03119 * 8 7 6 32 32 H 1.08007 * 120.53723 * 179.72016 * 12 10 9 33 33 H 1.08995 * 110.21042 * 27.74403 * 14 5 4 34 34 H 1.09002 * 110.20313 * 265.84161 * 14 5 4 35 35 H 1.07994 * 120.25656 * 179.72736 * 15 4 3 36 36 H 1.08003 * 120.79572 * 180.26010 * 16 15 4 37 37 H 0.97002 * 119.99593 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1607 1.1408 0.0000 4 6 3.4874 1.1851 0.0005 5 7 4.1267 2.4123 -0.0001 6 6 4.9868 2.5632 1.1961 7 6 4.9449 4.0312 1.5474 8 6 5.7507 4.8272 2.3355 9 7 5.4888 6.1124 2.4813 10 6 4.4613 6.6857 1.8832 11 17 4.1741 8.3829 2.1094 12 6 3.6064 5.9474 1.0821 13 6 3.8521 4.5982 0.9075 14 6 3.1502 3.5196 0.1201 15 6 4.2494 0.0141 -0.0041 16 6 3.6198 -1.1977 0.0015 17 6 2.2068 -1.2212 0.0005 18 6 1.5090 -2.4488 0.0006 19 1 0.5046 -2.4990 -0.3934 20 6 2.1184 -3.5997 0.5107 21 7 3.1998 -3.4985 1.2415 22 14 1.3893 -5.2811 0.1493 23 1 1.9844 -5.8205 -1.0998 24 1 1.6854 -6.2017 1.2763 25 1 -0.0813 -5.1579 -0.0161 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8898 0.5139 28 1 -0.3634 0.8901 0.5137 29 1 6.0083 2.2602 0.9660 30 1 4.5949 1.9676 2.0206 31 1 6.6035 4.3945 2.8375 32 1 2.7639 6.4189 0.5979 33 1 2.2617 3.1819 0.6536 34 1 2.8786 3.8908 -0.8681 35 1 5.3281 0.0669 -0.0080 36 1 4.1881 -2.1161 0.0023 37 1 3.6226 -4.2967 1.5950 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158756414.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:17 Heat of formation + Delta-G solvation = 77.673262 kcal Electronic energy + Delta-G solvation = -22652.728225 eV Core-core repulsion = 19227.823876 eV Total energy + Delta-G solvation = -3424.904349 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.05089 -39.12722 -37.34416 -36.54328 -34.17980 -32.68519 -31.74731 -31.22982 -29.83809 -28.00348 -26.87602 -25.80495 -23.76830 -22.20875 -22.03424 -20.69428 -20.24879 -17.47457 -17.27927 -16.73436 -16.09406 -15.61930 -15.30276 -14.87294 -14.72722 -14.18012 -13.97790 -13.89157 -13.29922 -13.02334 -12.82514 -12.42138 -12.06254 -11.94388 -11.79958 -11.73637 -11.57358 -11.50493 -11.43556 -11.25599 -11.11413 -11.00604 -10.71421 -10.05251 -9.81921 -9.77368 -9.50090 -9.12924 -8.63076 -8.35704 -8.15252 -7.28051 -6.94889 -4.54298 0.80697 1.05608 1.65740 2.41462 2.80880 2.95108 2.98020 3.01378 3.50097 3.75251 4.11890 4.21983 4.44110 4.54483 4.60895 4.86062 5.00481 5.38736 5.45123 5.54322 5.59689 5.72141 5.82901 5.92938 6.06155 6.19751 6.20569 6.32867 6.39944 6.46822 6.56089 6.63872 6.81060 6.86173 7.07279 7.16376 7.23022 7.58189 7.66411 7.83648 7.97477 8.32044 8.55215 8.61661 9.41008 9.93860 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.033426 B = 0.002737 C = 0.002608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.468482 B =10229.215124 C =10733.143460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.017 3.983 3 N -0.486 5.486 4 C 0.141 3.859 5 N -0.430 5.430 6 C 0.084 3.916 7 C -0.147 4.147 8 C 0.134 3.866 9 N -0.479 5.479 10 C 0.172 3.828 11 Cl -0.035 7.035 12 C -0.138 4.138 13 C -0.039 4.039 14 C 0.081 3.919 15 C -0.140 4.140 16 C -0.119 4.119 17 C 0.062 3.938 18 C -0.439 4.439 19 H 0.086 0.914 20 C 0.072 3.928 21 N -0.790 5.790 22 Si 0.914 3.086 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.260 1.260 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.095 0.905 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.145 0.855 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.132 0.868 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.889 10.217 1.042 10.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.125 4.125 3 N -0.198 5.198 4 C -0.089 4.089 5 N -0.149 5.149 6 C -0.043 4.043 7 C -0.149 4.149 8 C -0.023 4.023 9 N -0.190 5.190 10 C 0.007 3.993 11 Cl -0.007 7.007 12 C -0.159 4.159 13 C -0.048 4.048 14 C -0.046 4.046 15 C -0.163 4.163 16 C -0.145 4.145 17 C 0.057 3.943 18 C -0.469 4.469 19 H 0.104 0.896 20 C -0.147 4.147 21 N -0.415 5.415 22 Si 0.738 3.262 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.184 1.184 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.183 0.817 32 H 0.163 0.837 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.150 0.850 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.433 11.517 1.230 11.835 hybrid contribution -0.595 -1.924 0.114 2.017 sum 1.838 9.593 1.344 9.860 Atomic orbital electron populations 1.20249 0.91008 1.01175 1.00405 1.20818 0.94890 0.87525 1.09286 1.66521 1.08162 1.31227 1.13917 1.18820 0.88558 0.88488 1.13045 1.62761 1.16812 1.01036 1.34304 1.21725 1.00188 0.89743 0.92668 1.21817 0.96683 0.98101 0.98335 1.21922 0.98191 0.86909 0.95228 1.67081 1.17930 1.12200 1.21821 1.21453 0.93721 0.87540 0.96577 1.98392 1.94756 1.11353 1.96195 1.21062 1.01248 0.92840 1.00760 1.21145 0.94952 0.93575 0.95092 1.21542 0.95631 0.87368 1.00053 1.20805 0.98491 0.92350 1.04615 1.21383 0.94824 0.96533 1.01750 1.18320 0.92413 0.93123 0.90462 1.19573 1.01513 0.91832 1.33969 0.89594 1.26005 0.94368 1.01815 0.92511 1.69801 1.16891 1.32032 1.22747 0.86200 0.80589 0.80359 0.79049 1.19110 1.20150 1.18369 0.93298 0.91340 0.93381 0.88650 0.91002 0.81705 0.83701 0.88220 0.88798 0.88028 0.85043 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.39 9.58 36.00 0.34 -1.04 16 2 C 0.02 0.40 6.86 -81.79 -0.56 -0.16 16 3 N -0.49 -10.93 8.09 -8.05 -0.07 -10.99 16 4 C 0.14 3.02 6.12 -155.13 -0.95 2.07 16 5 N -0.43 -7.82 5.49 -173.57 -0.95 -8.77 16 6 C 0.08 1.30 5.97 -4.16 -0.02 1.28 16 7 C -0.15 -2.08 6.31 -104.38 -0.66 -2.74 16 8 C 0.13 1.72 11.19 -17.58 -0.20 1.52 16 9 N -0.48 -6.73 10.34 -10.35 -0.11 -6.84 16 10 C 0.17 2.29 7.28 -17.39 -0.13 2.16 16 11 Cl -0.04 -0.41 29.11 -51.86 -1.51 -1.92 16 12 C -0.14 -1.77 9.88 -39.49 -0.39 -2.16 16 13 C -0.04 -0.56 6.33 -104.35 -0.66 -1.22 16 14 C 0.08 1.33 6.17 -4.22 -0.03 1.30 16 15 C -0.14 -3.07 9.31 -39.64 -0.37 -3.44 16 16 C -0.12 -2.85 8.73 -39.01 -0.34 -3.20 16 17 C 0.06 1.51 5.59 -106.65 -0.60 0.92 16 18 C -0.44 -10.52 8.16 -37.85 -0.31 -10.83 16 19 H 0.09 1.95 6.84 -52.48 -0.36 1.60 16 20 C 0.07 1.64 5.22 -17.34 -0.09 1.55 16 21 N -0.79 -18.65 10.83 55.54 0.60 -18.05 16 22 Si 0.91 17.14 29.58 -169.99 -5.03 12.11 16 23 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 24 H -0.28 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.26 -4.81 7.11 56.52 0.40 -4.41 16 26 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 1.32 6.75 -51.93 -0.35 0.97 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.20 7.79 -51.93 -0.40 0.79 16 31 H 0.17 1.61 8.06 -52.48 -0.42 1.19 16 32 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 33 H 0.10 1.80 6.66 -51.93 -0.35 1.45 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.10 1.99 7.98 -52.49 -0.42 1.57 16 36 H 0.13 3.22 6.17 -52.48 -0.32 2.89 16 37 H 0.28 6.11 8.30 -40.82 -0.34 5.77 16 LS Contribution 326.63 15.07 4.92 4.92 Total: -1.00 -26.09 326.63 -10.97 -37.06 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -3.87 Total: 6.48 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -4.95 Total: -14.00 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -0.52 Total: -44.66 kcal Atomic # 14 Polarization: 17.14 SS G_CDS: -5.03 Total: 12.11 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -26.09 -10.97 -37.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158756414.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.731 kcal (2) G-P(sol) polarization free energy of solvation -26.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds