Wall clock time and date at job start Tue Mar 31 2020 10:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38690 * 119.27087 * 2 1 4 4 C 1.38003 * 119.62222 * 180.02562 * 3 2 1 5 5 C 1.41005 * 118.28584 * 359.97438 * 4 3 2 6 6 C 1.41018 * 120.70802 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00113 * 152.68397 * 6 5 4 8 8 C 1.39945 * 119.99699 * 332.67868 * 6 5 4 9 9 N 1.30871 * 119.99729 * 160.90498 * 8 6 5 10 10 Si 1.86806 * 120.00273 * 340.91244 * 8 6 5 11 11 H 1.48492 * 109.47249 * 91.98602 * 10 8 6 12 12 H 1.48500 * 109.46769 * 211.98643 * 10 8 6 13 13 H 1.48501 * 109.46870 * 331.98206 * 10 8 6 14 14 C 1.41708 * 118.58324 * 359.97438 * 5 4 3 15 15 N 1.38089 * 119.90008 * 180.02562 * 14 5 4 16 16 C 1.48098 * 111.00549 * 78.52134 * 15 14 5 17 17 C 1.51002 * 105.71546 * 146.82091 * 16 15 14 18 18 C 1.37979 * 132.64652 * 162.63661 * 17 16 15 19 19 N 1.31975 * 120.60053 * 179.97438 * 18 17 16 20 20 C 1.31987 * 121.83212 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.63220 * 180.02562 * 20 19 18 22 22 C 1.38495 * 120.73748 * 0.02986 * 20 19 18 23 23 C 1.38239 * 118.92311 * 359.95272 * 22 20 19 24 24 C 1.48129 * 110.99768 * 193.61928 * 15 14 5 25 25 N 1.31965 * 119.27738 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47327 * 90.00383 * 1 2 3 27 27 H 1.09003 * 109.46746 * 209.99337 * 1 2 3 28 28 H 1.08997 * 109.47370 * 329.99778 * 1 2 3 29 29 H 1.07997 * 120.18500 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.85486 * 179.72901 * 4 3 2 31 31 H 0.97005 * 119.99933 * 180.02562 * 9 8 6 32 32 H 1.08995 * 110.20348 * 265.88356 * 16 15 14 33 33 H 1.09001 * 110.19624 * 27.68317 * 16 15 14 34 34 H 1.08010 * 119.70416 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.53884 * 179.97438 * 22 20 19 36 36 H 1.09000 * 110.20767 * 332.25060 * 24 15 14 37 37 H 1.08999 * 110.20790 * 94.15524 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2098 0.0000 4 6 3.5651 1.2183 -0.0005 5 6 4.2409 -0.0193 -0.0005 6 6 5.6502 -0.0702 -0.0016 7 1 6.1602 -0.9200 0.4276 8 6 6.3879 0.9803 -0.5589 9 7 7.6491 1.1329 -0.2449 10 14 5.5722 2.1650 -1.7509 11 1 5.0320 3.3276 -1.0016 12 1 6.5723 2.6364 -2.7423 13 1 4.4642 1.4725 -2.4566 14 6 3.4737 -1.2107 0.0006 15 7 4.1075 -2.4376 0.0012 16 6 4.5961 -2.7820 1.3561 17 6 4.4825 -4.2840 1.4623 18 6 5.0459 -5.2057 2.3208 19 7 4.7764 -6.4917 2.1967 20 6 3.9665 -6.9459 1.2587 21 17 3.6515 -8.6495 1.1480 22 6 3.3653 -6.0786 0.3618 23 6 3.6257 -4.7249 0.4639 24 6 3.1569 -3.5262 -0.3233 25 7 2.1524 -1.1511 0.0005 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6363 2.1399 0.0004 30 1 4.1133 2.1488 -0.0049 31 1 8.1604 1.8613 -0.6309 32 1 5.6354 -2.4741 1.4711 33 1 3.9759 -2.3020 2.1132 34 1 5.7135 -4.8718 3.1014 35 1 2.7035 -6.4539 -0.4047 36 1 2.1478 -3.2480 -0.0194 37 1 3.1830 -3.7430 -1.3912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001158758182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:20 Heat of formation + Delta-G solvation = 82.978698 kcal Electronic energy + Delta-G solvation = -23151.769638 eV Core-core repulsion = 19727.095350 eV Total energy + Delta-G solvation = -3424.674288 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.96320 -39.23664 -37.24656 -36.42925 -34.32636 -32.70959 -31.76569 -31.66693 -29.61328 -28.27103 -27.50819 -25.36205 -23.56836 -22.28839 -21.91903 -21.12255 -20.38550 -17.63971 -17.17854 -16.66520 -16.05969 -15.77894 -15.24616 -15.08336 -14.51399 -14.12423 -13.93452 -13.75779 -13.55379 -13.25114 -12.98180 -12.77214 -12.14741 -11.98965 -11.94045 -11.82316 -11.68541 -11.60309 -11.41548 -11.32553 -11.10107 -10.86010 -10.46552 -10.01879 -9.75556 -9.71223 -9.56904 -9.09230 -8.67637 -8.47749 -8.13045 -7.39438 -7.19609 -4.63112 0.92556 1.16650 1.74496 2.18909 2.44556 2.94513 3.05987 3.16662 3.61606 3.78339 4.19531 4.27567 4.45797 4.59223 4.71684 4.97996 5.08597 5.15132 5.39453 5.63412 5.65165 5.75993 5.83211 5.91465 5.98908 6.07828 6.12628 6.17537 6.26113 6.32022 6.34925 6.48060 6.51451 6.69029 6.82714 6.93791 7.29521 7.34126 7.60840 7.69513 7.88249 8.12815 8.44805 8.51304 9.19103 9.79717 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.003924 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.259145 B = 7133.690413 C = 8308.078174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.011 4.011 3 C -0.119 4.119 4 C -0.214 4.214 5 C 0.061 3.939 6 C -0.402 4.402 7 H 0.103 0.897 8 C 0.082 3.918 9 N -0.787 5.787 10 Si 0.914 3.086 11 H -0.268 1.268 12 H -0.288 1.288 13 H -0.246 1.246 14 C 0.172 3.828 15 N -0.415 5.415 16 C 0.087 3.913 17 C -0.141 4.141 18 C 0.134 3.866 19 N -0.479 5.479 20 C 0.170 3.830 21 Cl -0.038 7.038 22 C -0.139 4.139 23 C -0.038 4.038 24 C 0.071 3.929 25 N -0.482 5.482 26 H 0.051 0.949 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.104 0.896 30 H 0.114 0.886 31 H 0.290 0.710 32 H 0.105 0.895 33 H 0.067 0.933 34 H 0.166 0.834 35 H 0.144 0.856 36 H 0.104 0.896 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.310 -7.145 1.151 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.148 4.148 3 C -0.139 4.139 4 C -0.239 4.239 5 C 0.054 3.946 6 C -0.430 4.430 7 H 0.121 0.879 8 C -0.140 4.140 9 N -0.409 5.409 10 Si 0.740 3.260 11 H -0.194 1.194 12 H -0.215 1.215 13 H -0.170 1.170 14 C -0.064 4.064 15 N -0.135 5.135 16 C -0.040 4.040 17 C -0.144 4.144 18 C -0.023 4.023 19 N -0.190 5.190 20 C 0.006 3.994 21 Cl -0.010 7.010 22 C -0.160 4.160 23 C -0.046 4.046 24 C -0.056 4.056 25 N -0.194 5.194 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.122 0.878 30 H 0.131 0.869 31 H 0.100 0.900 32 H 0.123 0.877 33 H 0.085 0.915 34 H 0.183 0.817 35 H 0.162 0.838 36 H 0.122 0.878 37 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.711 -8.488 1.327 10.316 hybrid contribution -0.614 1.764 -0.577 1.954 sum -6.325 -6.724 0.750 9.262 Atomic orbital electron populations 1.20278 0.91181 1.01017 1.00632 1.19987 0.94708 0.87829 1.12249 1.21314 0.94650 0.97419 1.00542 1.21322 0.93834 0.97305 1.11465 1.17991 0.94281 0.89947 0.92371 1.19459 0.89306 1.04121 1.30078 0.87926 1.26265 0.94766 0.96878 0.96047 1.69693 1.09053 1.27940 1.34246 0.86308 0.79627 0.79972 0.80067 1.19412 1.21483 1.16963 1.19380 0.87026 0.89438 1.10522 1.62642 1.29919 0.99315 1.21588 1.21679 1.03372 0.87978 0.90985 1.21848 0.97864 0.98072 0.96629 1.21932 0.97100 0.85688 0.97550 1.67074 1.14634 1.16589 1.20727 1.21424 0.96789 0.86893 0.94325 1.98385 1.93838 1.11503 1.97232 1.21029 1.02619 0.91515 1.00836 1.21062 0.93986 0.93986 0.95607 1.21654 0.98222 0.86005 0.99759 1.66539 1.09855 1.30276 1.12702 0.93052 0.92608 0.92713 0.87762 0.86868 0.89952 0.87697 0.91532 0.81661 0.83845 0.87835 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.15 36.01 0.37 -0.79 16 2 C -0.01 -0.22 6.79 -82.37 -0.56 -0.77 16 3 C -0.12 -2.42 9.69 -39.50 -0.38 -2.80 16 4 C -0.21 -4.79 7.40 -38.62 -0.29 -5.07 16 5 C 0.06 1.43 5.14 -106.47 -0.55 0.88 16 6 C -0.40 -9.84 9.04 -37.89 -0.34 -10.18 16 7 H 0.10 2.59 6.04 -52.49 -0.32 2.27 16 8 C 0.08 1.97 5.42 -17.32 -0.09 1.88 16 9 N -0.79 -19.15 13.93 55.55 0.77 -18.38 16 10 Si 0.91 19.38 24.53 -169.99 -4.17 15.21 16 11 H -0.27 -5.45 6.50 56.52 0.37 -5.08 16 12 H -0.29 -5.90 7.11 56.52 0.40 -5.50 16 13 H -0.25 -5.49 6.98 56.52 0.39 -5.09 16 14 C 0.17 3.81 5.80 -155.03 -0.90 2.91 16 15 N -0.42 -8.29 4.91 -173.12 -0.85 -9.14 16 16 C 0.09 1.54 5.93 -4.17 -0.02 1.51 16 17 C -0.14 -2.22 6.31 -104.38 -0.66 -2.88 16 18 C 0.13 1.91 11.19 -17.58 -0.20 1.71 16 19 N -0.48 -7.26 10.34 -10.35 -0.11 -7.37 16 20 C 0.17 2.42 7.28 -17.39 -0.13 2.30 16 21 Cl -0.04 -0.46 29.11 -51.86 -1.51 -1.97 16 22 C -0.14 -1.90 9.89 -39.49 -0.39 -2.29 16 23 C -0.04 -0.58 6.33 -104.35 -0.66 -1.24 16 24 C 0.07 1.21 6.38 -4.21 -0.03 1.18 16 25 N -0.48 -10.25 8.06 -8.11 -0.07 -10.32 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 29 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 30 H 0.11 2.49 4.43 -52.49 -0.23 2.26 16 31 H 0.29 6.39 8.30 -40.82 -0.34 6.05 16 32 H 0.11 1.88 6.74 -51.93 -0.35 1.53 16 33 H 0.07 1.21 7.78 -51.93 -0.40 0.81 16 34 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.10 1.85 6.40 -51.93 -0.33 1.52 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 320.56 15.07 4.83 4.83 Total: -1.00 -26.12 320.56 -9.69 -35.81 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.77 Total: 4.97 kcal Atomic # 6 Polarization: -8.83 SS G_CDS: -4.83 Total: -13.66 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.25 Total: -45.19 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -4.17 Total: 15.21 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -1.51 Total: -1.97 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.12 -9.69 -35.81 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158758182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.794 kcal (2) G-P(sol) polarization free energy of solvation -26.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds