Wall clock time and date at job start Tue Mar 31 2020 10:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38690 * 119.27087 * 2 1 4 4 C 1.38003 * 119.62222 * 180.02562 * 3 2 1 5 5 C 1.41005 * 118.28584 * 359.97438 * 4 3 2 6 6 C 1.41018 * 120.70802 * 179.97438 * 5 4 3 7 7 H 1.07999 * 120.00113 * 152.68397 * 6 5 4 8 8 C 1.39945 * 119.99699 * 332.67868 * 6 5 4 9 9 N 1.30871 * 119.99729 * 160.90498 * 8 6 5 10 10 Si 1.86806 * 120.00273 * 340.91244 * 8 6 5 11 11 H 1.48492 * 109.47249 * 91.98602 * 10 8 6 12 12 H 1.48500 * 109.46769 * 211.98643 * 10 8 6 13 13 H 1.48501 * 109.46870 * 331.98206 * 10 8 6 14 14 C 1.41708 * 118.58324 * 359.97438 * 5 4 3 15 15 N 1.38089 * 119.90008 * 180.02562 * 14 5 4 16 16 C 1.48098 * 111.00549 * 78.52134 * 15 14 5 17 17 C 1.51002 * 105.71546 * 146.82091 * 16 15 14 18 18 C 1.37979 * 132.64652 * 162.63661 * 17 16 15 19 19 N 1.31975 * 120.60053 * 179.97438 * 18 17 16 20 20 C 1.31987 * 121.83212 * 359.97438 * 19 18 17 21 21 Cl 1.73604 * 119.63220 * 180.02562 * 20 19 18 22 22 C 1.38495 * 120.73748 * 0.02986 * 20 19 18 23 23 C 1.38239 * 118.92311 * 359.95272 * 22 20 19 24 24 C 1.48129 * 110.99768 * 193.61928 * 15 14 5 25 25 N 1.31965 * 119.27738 * 179.97438 * 2 1 3 26 26 H 1.09002 * 109.47327 * 90.00383 * 1 2 3 27 27 H 1.09003 * 109.46746 * 209.99337 * 1 2 3 28 28 H 1.08997 * 109.47370 * 329.99778 * 1 2 3 29 29 H 1.07997 * 120.18500 * 0.02562 * 3 2 1 30 30 H 1.08000 * 120.85486 * 179.72901 * 4 3 2 31 31 H 0.97005 * 119.99933 * 180.02562 * 9 8 6 32 32 H 1.08995 * 110.20348 * 265.88356 * 16 15 14 33 33 H 1.09001 * 110.19624 * 27.68317 * 16 15 14 34 34 H 1.08010 * 119.70416 * 359.97438 * 18 17 16 35 35 H 1.08001 * 120.53884 * 179.97438 * 22 20 19 36 36 H 1.09000 * 110.20767 * 332.25060 * 24 15 14 37 37 H 1.08999 * 110.20790 * 94.15524 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1851 1.2098 0.0000 4 6 3.5651 1.2183 -0.0005 5 6 4.2409 -0.0193 -0.0005 6 6 5.6502 -0.0702 -0.0016 7 1 6.1602 -0.9200 0.4276 8 6 6.3879 0.9803 -0.5589 9 7 7.6491 1.1329 -0.2449 10 14 5.5722 2.1650 -1.7509 11 1 5.0320 3.3276 -1.0016 12 1 6.5723 2.6364 -2.7423 13 1 4.4642 1.4725 -2.4566 14 6 3.4737 -1.2107 0.0006 15 7 4.1075 -2.4376 0.0012 16 6 4.5961 -2.7820 1.3561 17 6 4.4825 -4.2840 1.4623 18 6 5.0459 -5.2057 2.3208 19 7 4.7764 -6.4917 2.1967 20 6 3.9665 -6.9459 1.2587 21 17 3.6515 -8.6495 1.1480 22 6 3.3653 -6.0786 0.3618 23 6 3.6257 -4.7249 0.4639 24 6 3.1569 -3.5262 -0.3233 25 7 2.1524 -1.1511 0.0005 26 1 -0.3634 -0.0001 -1.0277 27 1 -0.3633 -0.8901 0.5138 28 1 -0.3634 0.8899 0.5138 29 1 1.6363 2.1399 0.0004 30 1 4.1133 2.1488 -0.0049 31 1 8.1604 1.8613 -0.6309 32 1 5.6354 -2.4741 1.4711 33 1 3.9759 -2.3020 2.1132 34 1 5.7135 -4.8718 3.1014 35 1 2.7035 -6.4539 -0.4047 36 1 2.1478 -3.2480 -0.0194 37 1 3.1830 -3.7430 -1.3912 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158758182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:19 Heat of formation + Delta-G solvation = 68.727388 kcal Electronic energy + Delta-G solvation = -23152.387621 eV Core-core repulsion = 19727.095350 eV Total energy + Delta-G solvation = -3425.292272 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.26460 -40.75684 -38.59914 -37.56178 -36.04575 -34.10024 -33.43228 -32.91560 -31.04585 -29.78409 -28.89982 -26.78407 -25.11435 -23.71441 -23.21685 -22.59033 -21.96260 -19.39095 -18.51945 -17.89773 -17.61939 -17.18492 -16.77880 -16.37395 -15.90347 -15.54210 -15.29558 -15.22057 -15.01317 -14.65545 -14.53377 -14.25438 -13.69933 -13.46812 -13.38312 -13.26583 -13.04615 -12.72055 -12.68355 -12.61735 -12.47552 -12.38807 -12.10396 -11.73661 -11.31035 -11.05738 -10.87327 -10.49120 -10.20007 -10.00376 -9.68799 -9.00876 -8.95157 -6.42819 -0.24021 -0.00712 0.51083 0.66259 0.72688 1.23906 1.37287 1.46049 2.06898 2.44913 2.55600 2.84794 3.11458 3.26399 3.45513 3.60118 3.77642 3.82565 4.03999 4.22200 4.36318 4.42163 4.50053 4.54816 4.58090 4.64788 4.73667 4.79401 4.85309 4.97772 4.99314 5.09730 5.15550 5.24553 5.32211 5.41035 5.62282 5.75966 5.98344 6.14925 6.33779 6.54778 6.70069 6.78207 7.51514 8.09558 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.003924 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.259145 B = 7133.690413 C = 8308.078174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.004 4.004 3 C -0.128 4.128 4 C -0.223 4.223 5 C 0.040 3.960 6 C -0.433 4.433 7 H 0.078 0.922 8 C 0.052 3.948 9 N -0.827 5.827 10 Si 0.960 3.040 11 H -0.252 1.252 12 H -0.278 1.278 13 H -0.264 1.264 14 C 0.170 3.830 15 N -0.437 5.437 16 C 0.098 3.902 17 C -0.153 4.153 18 C 0.139 3.861 19 N -0.492 5.492 20 C 0.166 3.834 21 Cl -0.017 7.017 22 C -0.130 4.130 23 C -0.043 4.043 24 C 0.077 3.923 25 N -0.492 5.492 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.115 0.885 31 H 0.297 0.703 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.190 0.810 35 H 0.171 0.829 36 H 0.098 0.902 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.756 -7.594 0.867 11.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.141 4.141 3 C -0.148 4.148 4 C -0.249 4.249 5 C 0.034 3.966 6 C -0.462 4.462 7 H 0.096 0.904 8 C -0.166 4.166 9 N -0.451 5.451 10 Si 0.784 3.216 11 H -0.177 1.177 12 H -0.204 1.204 13 H -0.188 1.188 14 C -0.065 4.065 15 N -0.157 5.157 16 C -0.029 4.029 17 C -0.156 4.156 18 C -0.017 4.017 19 N -0.203 5.203 20 C 0.001 3.999 21 Cl 0.011 6.989 22 C -0.151 4.151 23 C -0.052 4.052 24 C -0.050 4.050 25 N -0.204 5.204 26 H 0.086 0.914 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.158 0.842 30 H 0.132 0.868 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.074 0.926 34 H 0.206 0.794 35 H 0.189 0.811 36 H 0.116 0.884 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.151 -8.954 1.050 12.154 hybrid contribution -0.080 1.747 -0.457 1.808 sum -8.231 -7.207 0.594 10.956 Atomic orbital electron populations 1.20382 0.87627 1.02660 1.02173 1.20933 0.97155 0.87444 1.08608 1.21726 0.93969 0.99217 0.99862 1.21533 0.95092 0.96940 1.11339 1.18200 0.94168 0.91204 0.93055 1.19357 0.90015 1.04263 1.32551 0.90358 1.26776 0.95090 0.97875 0.96815 1.69712 1.10020 1.29373 1.36011 0.85614 0.78487 0.78835 0.78657 1.17738 1.20432 1.18827 1.19599 0.87451 0.89987 1.09434 1.62510 1.30736 0.99566 1.22842 1.21427 1.02205 0.89621 0.89670 1.21690 0.99198 0.96828 0.97878 1.22254 0.96721 0.85245 0.97511 1.67176 1.15147 1.16658 1.21281 1.21702 0.96231 0.88014 0.93950 1.98394 1.93633 1.09735 1.97122 1.21232 1.02371 0.90436 1.01060 1.20976 0.94383 0.94417 0.95428 1.21576 0.97260 0.85865 1.00299 1.66738 1.09312 1.30973 1.13396 0.91405 0.92083 0.90039 0.84178 0.86773 0.89269 0.89045 0.92637 0.79360 0.81106 0.88438 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.95 10.15 71.24 0.72 -1.23 16 2 C 0.00 -0.14 6.79 42.65 0.29 0.15 16 3 C -0.13 -4.90 9.69 22.32 0.22 -4.68 16 4 C -0.22 -9.88 7.40 22.89 0.17 -9.71 16 5 C 0.04 1.93 5.14 -21.06 -0.11 1.82 16 6 C -0.43 -22.28 9.04 23.37 0.21 -22.07 16 7 H 0.08 4.26 6.04 -2.91 -0.02 4.25 16 8 C 0.05 2.58 5.42 85.25 0.46 3.04 16 9 N -0.83 -41.91 13.93 21.83 0.30 -41.60 16 10 Si 0.96 40.20 24.53 68.60 1.68 41.88 16 11 H -0.25 -9.78 6.50 99.48 0.65 -9.13 16 12 H -0.28 -11.02 7.11 99.48 0.71 -10.32 16 13 H -0.26 -11.67 6.98 99.48 0.69 -10.97 16 14 C 0.17 7.61 5.80 134.05 0.78 8.39 16 15 N -0.44 -17.89 4.91 -701.64 -3.45 -21.34 16 16 C 0.10 3.60 5.93 85.42 0.51 4.11 16 17 C -0.15 -4.81 6.31 -19.71 -0.12 -4.93 16 18 C 0.14 3.86 11.19 84.61 0.95 4.80 16 19 N -0.49 -14.14 10.34 -186.67 -1.93 -16.07 16 20 C 0.17 4.38 7.28 84.73 0.62 5.00 16 21 Cl -0.02 -0.38 29.11 -2.72 -0.08 -0.46 16 22 C -0.13 -3.30 9.89 22.33 0.22 -3.08 16 23 C -0.04 -1.31 6.33 -19.69 -0.12 -1.43 16 24 C 0.08 2.61 6.38 85.37 0.54 3.16 16 25 N -0.49 -20.43 8.06 -179.57 -1.45 -21.88 16 26 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.08 1.84 8.07 -2.39 -0.02 1.82 16 29 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 30 H 0.11 4.95 4.43 -2.91 -0.01 4.94 16 31 H 0.30 13.53 8.30 -92.70 -0.77 12.76 16 32 H 0.09 3.55 6.74 -2.39 -0.02 3.53 16 33 H 0.06 2.12 7.78 -2.39 -0.02 2.10 16 34 H 0.19 4.16 8.06 -2.91 -0.02 4.14 16 35 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 36 H 0.10 3.42 6.40 -2.39 -0.02 3.41 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -57.08 320.56 1.46 -55.62 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 1.05 Total: 20.50 kcal Atomic # 6 Polarization: -21.98 SS G_CDS: 5.33 Total: -16.66 kcal Atomic # 7 Polarization: -94.37 SS G_CDS: -6.52 Total: -100.89 kcal Atomic # 14 Polarization: 40.20 SS G_CDS: 1.68 Total: 41.88 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -0.08 Total: -0.46 kcal Total: -57.08 1.46 -55.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158758182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.351 kcal (2) G-P(sol) polarization free energy of solvation -57.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds