Wall clock time and date at job start Tue Mar 31 2020 10:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47241 * 2 1 4 4 H 1.08996 * 109.46994 * 304.99987 * 3 2 1 5 5 C 1.50696 * 109.47287 * 184.99996 * 3 2 1 6 6 H 1.08007 * 120.00263 * 239.99951 * 5 3 2 7 7 C 1.37875 * 120.00354 * 60.00295 * 5 3 2 8 8 N 1.31519 * 119.99836 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00415 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47382 * 119.99858 * 9 7 5 12 12 H 1.48499 * 109.47024 * 239.99765 * 9 7 5 13 13 N 1.46499 * 109.47122 * 65.00133 * 3 2 1 14 14 C 1.38295 * 119.99727 * 275.00441 * 13 3 2 15 15 N 1.31555 * 119.34222 * 359.97438 * 14 13 3 16 16 C 1.33864 * 121.70130 * 180.02562 * 15 14 13 17 17 C 1.40514 * 120.69775 * 180.02562 * 16 15 14 18 18 C 1.36169 * 119.82761 * 179.97438 * 17 16 15 19 19 C 1.39295 * 121.05727 * 359.97438 * 18 17 16 20 20 C 1.36188 * 120.81760 * 0.02790 * 19 18 17 21 21 C 1.40464 * 119.65181 * 359.97137 * 20 19 18 22 22 C 1.40796 * 121.09197 * 180.02562 * 21 20 19 23 23 Cl 1.73602 * 120.97361 * 359.96250 * 22 21 20 24 24 C 1.39066 * 118.05883 * 179.89670 * 22 21 20 25 25 C 1.43200 * 120.32294 * 180.02562 * 24 22 21 26 26 N 5.66495 * 91.66045 * 53.49599 * 2 1 3 27 27 H 1.09001 * 109.46717 * 59.99978 * 1 2 3 28 28 H 1.09003 * 109.46696 * 179.97438 * 1 2 3 29 29 H 1.08991 * 109.46928 * 299.99594 * 1 2 3 30 30 H 1.09001 * 109.47402 * 240.00197 * 2 1 3 31 31 H 1.08999 * 109.47617 * 120.00127 * 2 1 3 32 32 H 0.96992 * 120.00484 * 180.02562 * 8 7 5 33 33 H 0.96999 * 120.00138 * 94.99561 * 13 3 2 34 34 H 1.07992 * 120.08861 * 359.94911 * 17 16 15 35 35 H 1.08003 * 119.47214 * 180.28262 * 18 17 16 36 36 H 1.08000 * 119.58824 * 179.97438 * 19 18 17 37 37 H 1.08002 * 120.17809 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6523 7 6 4.1433 0.8785 -1.2279 8 7 3.4063 0.3367 -2.1729 9 14 6.0050 0.8801 -1.3811 10 1 6.5988 1.5452 -0.1936 11 1 6.4963 -0.5189 -1.4627 12 1 6.4000 1.6158 -2.6091 13 7 1.6525 2.0975 1.2518 14 6 0.4034 2.6791 1.3700 15 7 -0.4264 2.6371 0.3500 16 6 -1.6462 3.1850 0.4124 17 6 -2.5157 3.1274 -0.6898 18 6 -3.7529 3.6902 -0.6067 19 6 -4.1763 4.3260 0.5581 20 6 -3.3619 4.4021 1.6470 21 6 -2.0790 3.8323 1.5964 22 6 -1.2123 3.8929 2.7044 23 17 -1.6970 4.6758 4.1760 24 6 0.0428 3.3060 2.5859 25 6 0.9627 3.3387 3.6829 26 7 1.6941 3.3685 4.5517 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 3.8293 -0.0617 -2.9495 33 1 2.2720 2.1231 1.9978 34 1 -2.2036 2.6383 -1.6007 35 1 -4.4183 3.6385 -1.4558 36 1 -5.1624 4.7648 0.5978 37 1 -3.7009 4.8972 2.5450 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161053277.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:47:37 Heat of formation + Delta-G solvation = 82.332796 kcal Electronic energy + Delta-G solvation = -23296.962024 eV Core-core repulsion = 19872.259727 eV Total energy + Delta-G solvation = -3424.702297 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.81935 -38.09620 -37.20171 -36.32098 -35.44780 -33.05344 -32.80942 -31.27427 -30.21471 -29.24956 -26.82860 -24.77088 -23.46953 -22.52531 -22.08288 -20.00540 -19.55595 -18.44757 -17.24487 -16.55554 -15.90743 -15.25977 -15.13690 -14.90160 -14.49126 -14.23915 -13.90494 -13.68717 -13.41623 -13.16148 -13.10608 -12.79387 -12.59891 -12.34673 -11.91334 -11.75930 -11.49925 -11.42008 -11.33699 -11.21139 -10.97063 -10.89755 -10.44592 -10.26950 -10.01636 -9.72378 -9.45141 -9.15415 -8.99833 -8.54067 -8.33965 -7.14464 -6.20874 -4.30134 0.10112 0.99772 1.60639 1.81846 2.66418 2.81507 3.19786 3.28384 3.31378 3.40101 3.63626 3.85578 4.24146 4.29053 4.52592 4.80101 4.83536 4.97753 5.11286 5.14932 5.27253 5.40793 5.60890 5.76034 6.06409 6.30689 6.33126 6.35623 6.37540 6.50539 6.58172 6.83055 6.94673 7.04245 7.26303 7.36592 7.48681 7.58093 7.59062 7.80877 8.08745 8.15809 8.53479 8.78960 9.36566 10.84259 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.004524 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.144113 B = 6187.741997 C = 7524.785548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.128 4.128 3 C 0.273 3.727 4 H 0.063 0.937 5 C -0.539 4.539 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.880 5.880 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.282 1.282 12 H -0.282 1.282 13 N -0.672 5.672 14 C 0.474 3.526 15 N -0.522 5.522 16 C 0.228 3.772 17 C -0.116 4.116 18 C -0.075 4.075 19 C -0.151 4.151 20 C -0.066 4.066 21 C -0.168 4.168 22 C 0.107 3.893 23 Cl -0.038 7.038 24 C -0.132 4.132 25 C 0.259 3.741 26 N -0.406 5.406 27 H 0.057 0.943 28 H 0.022 0.978 29 H 0.033 0.967 30 H 0.102 0.898 31 H 0.030 0.970 32 H 0.265 0.735 33 H 0.400 0.600 34 H 0.140 0.860 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.027 6.497 4.750 17.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.167 4.167 3 C 0.172 3.828 4 H 0.081 0.919 5 C -0.577 4.577 6 H 0.079 0.921 7 C -0.133 4.133 8 N -0.517 5.517 9 Si 0.727 3.273 10 H -0.198 1.198 11 H -0.208 1.208 12 H -0.208 1.208 13 N -0.295 5.295 14 C 0.220 3.780 15 N -0.243 5.243 16 C 0.099 3.901 17 C -0.136 4.136 18 C -0.095 4.095 19 C -0.170 4.170 20 C -0.085 4.085 21 C -0.174 4.174 22 C 0.069 3.931 23 Cl -0.008 7.008 24 C -0.144 4.144 25 C -0.057 4.057 26 N -0.082 5.082 27 H 0.076 0.924 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.121 0.879 31 H 0.048 0.952 32 H 0.075 0.925 33 H 0.235 0.765 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.142 0.858 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.513 5.970 5.076 15.620 hybrid contribution 0.700 0.400 0.808 1.141 sum -12.813 6.370 5.884 15.471 Atomic orbital electron populations 1.21844 0.98180 0.98035 1.01055 1.21953 0.92818 0.99442 1.02462 1.19032 0.94394 0.89380 0.80037 0.91916 1.21242 0.90578 1.39416 1.06494 0.92140 1.24819 0.98637 0.94566 0.95248 1.69880 1.35082 1.37397 1.09314 0.86408 0.84774 0.77870 0.78202 1.19761 1.20780 1.20758 1.45775 1.10117 1.54325 1.19238 1.18268 0.87828 0.86261 0.85637 1.68024 1.03407 1.25452 1.27433 1.18688 0.90219 0.89782 0.91381 1.20758 0.93073 1.01751 0.97992 1.20936 0.95558 0.95297 0.97736 1.20711 1.00271 1.02483 0.93533 1.20898 0.91778 0.96879 0.98913 1.18255 0.96604 1.08611 0.93936 1.21221 0.91911 0.92131 0.87823 1.98394 1.91320 1.78165 1.32957 1.16353 0.92811 1.12767 0.92443 1.25086 0.93531 0.94101 0.92933 1.81218 1.08668 1.08531 1.09741 0.92424 0.95882 0.94827 0.87941 0.95151 0.92507 0.76456 0.84228 0.85466 0.85825 0.85470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 8.44 37.16 0.31 -2.34 16 2 C -0.13 -2.89 5.45 -26.73 -0.15 -3.04 16 3 C 0.27 6.36 2.24 -69.08 -0.15 6.20 16 4 H 0.06 1.62 7.51 -51.93 -0.39 1.23 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -23.37 11.29 55.43 0.63 -22.75 16 9 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 10 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.67 -13.49 5.06 -54.80 -0.28 -13.77 16 14 C 0.47 8.60 6.06 -155.52 -0.94 7.66 16 15 N -0.52 -9.37 6.26 -9.99 -0.06 -9.44 16 16 C 0.23 3.48 6.61 -84.80 -0.56 2.92 16 17 C -0.12 -1.49 9.97 -39.47 -0.39 -1.88 16 18 C -0.07 -0.75 9.94 -39.93 -0.40 -1.14 16 19 C -0.15 -1.43 9.96 -39.93 -0.40 -1.82 16 20 C -0.07 -0.71 9.46 -39.48 -0.37 -1.09 16 21 C -0.17 -2.30 5.74 -106.77 -0.61 -2.91 16 22 C 0.11 1.50 6.42 -38.31 -0.25 1.25 16 23 Cl -0.04 -0.45 26.76 -51.86 -1.39 -1.84 16 24 C -0.13 -2.12 5.77 -106.43 -0.61 -2.73 16 25 C 0.26 4.27 13.17 -22.47 -0.30 3.98 16 26 N -0.41 -7.09 18.54 41.84 0.78 -6.31 16 27 H 0.06 1.16 7.66 -51.93 -0.40 0.76 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.03 0.64 5.60 -51.93 -0.29 0.35 16 30 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 31 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 33 H 0.40 7.79 7.32 -40.82 -0.30 7.49 16 34 H 0.14 1.75 8.06 -52.49 -0.42 1.32 16 35 H 0.13 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 1.15 7.03 -52.49 -0.37 0.79 16 LS Contribution 329.59 15.07 4.97 4.97 Total: -1.00 -26.61 329.59 -9.31 -35.91 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -3.71 Total: 5.25 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -5.21 Total: -7.27 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 1.06 Total: -52.27 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 17 Polarization: -0.45 SS G_CDS: -1.39 Total: -1.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -26.61 -9.31 -35.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161053277.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.246 kcal (2) G-P(sol) polarization free energy of solvation -26.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds