Wall clock time and date at job start Tue Mar 31 2020 11:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46905 * 109.46952 * 2 1 4 4 C 1.46898 * 111.00037 * 298.15517 * 3 2 1 5 5 C 1.50707 * 109.46785 * 291.82269 * 4 3 2 6 6 H 1.07998 * 120.00028 * 357.72509 * 5 4 3 7 7 C 1.37879 * 119.99664 * 177.44964 * 5 4 3 8 8 N 1.31509 * 119.99967 * 0.27103 * 7 5 4 9 9 Si 1.86801 * 119.99961 * 180.27551 * 7 5 4 10 10 H 1.48509 * 109.46697 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47237 * 119.99808 * 9 7 5 12 12 H 1.48499 * 109.47047 * 240.00343 * 9 7 5 13 13 C 1.38296 * 110.99818 * 62.10634 * 3 2 1 14 14 N 1.31558 * 119.33402 * 255.94440 * 13 3 2 15 15 C 1.33874 * 121.69313 * 179.97438 * 14 13 3 16 16 C 1.40519 * 120.70365 * 180.02562 * 15 14 13 17 17 C 1.36168 * 119.82712 * 179.97438 * 16 15 14 18 18 C 1.39288 * 121.06168 * 0.03939 * 17 16 15 19 19 C 1.36190 * 120.81520 * 359.97438 * 18 17 16 20 20 C 1.40463 * 119.65221 * 359.97438 * 19 18 17 21 21 C 1.40792 * 121.08656 * 180.02562 * 20 19 18 22 22 Cl 1.73594 * 120.97266 * 359.97438 * 21 20 19 23 23 C 1.39072 * 118.05952 * 179.67012 * 21 20 19 24 24 C 1.43203 * 120.32594 * 180.30193 * 23 21 20 25 25 N 3.62502 * 136.87979 * 88.31442 * 2 1 3 26 26 H 1.09004 * 109.47439 * 65.20442 * 1 2 3 27 27 H 1.09007 * 109.47061 * 185.19510 * 1 2 3 28 28 H 1.08995 * 109.47636 * 305.19526 * 1 2 3 29 29 H 1.09002 * 109.47542 * 240.00060 * 2 1 3 30 30 H 1.09000 * 109.46983 * 119.99816 * 2 1 3 31 31 H 1.08993 * 109.47167 * 171.82159 * 4 3 2 32 32 H 1.09004 * 109.47169 * 51.81891 * 4 3 2 33 33 H 0.97000 * 119.99941 * 179.97438 * 8 7 5 34 34 H 1.08000 * 120.08304 * 359.97438 * 16 15 14 35 35 H 1.08004 * 119.46436 * 180.02562 * 17 16 15 36 36 H 1.07997 * 119.58933 * 180.02562 * 18 17 16 37 37 H 1.08002 * 120.17696 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5850 2.0971 -1.2091 5 6 2.2843 1.5178 -2.4119 6 1 3.0091 0.7271 -2.2862 7 6 1.9945 1.9933 -3.6732 8 7 1.1118 2.9561 -3.8262 9 14 2.8556 1.2700 -5.1647 10 1 3.7967 0.2081 -4.7263 11 1 1.8461 0.6882 -6.0854 12 1 3.6091 2.3390 -5.8680 13 6 1.6153 2.0536 1.1411 14 7 0.6305 2.9225 1.0642 15 6 0.2009 3.5956 2.1388 16 6 -0.8533 4.5187 2.0330 17 6 -1.2764 5.1931 3.1376 18 6 -0.6800 4.9849 4.3790 19 6 0.3444 4.0987 4.5211 20 6 0.8057 3.3848 3.4029 21 6 1.8622 2.4610 3.5154 22 17 2.6355 2.1698 5.0420 23 6 2.2638 1.7837 2.3691 24 6 3.3292 0.8286 2.4294 25 7 4.1760 0.0729 2.4767 26 1 -0.3634 0.4310 -0.9329 27 1 -0.3633 -1.0235 0.0931 28 1 -0.3634 0.5923 0.8397 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.8346 3.1541 -1.1178 32 1 0.5070 1.9872 -1.3278 33 1 0.9082 3.2909 -4.7135 34 1 -1.3266 4.6928 1.0779 35 1 -2.0873 5.9010 3.0497 36 1 -1.0348 5.5324 5.2397 37 1 0.7996 3.9457 5.4884 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166592024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:00 Heat of formation + Delta-G solvation = 95.577474 kcal Electronic energy + Delta-G solvation = -23380.831622 eV Core-core repulsion = 19956.703657 eV Total energy + Delta-G solvation = -3424.127965 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09531 -38.62498 -37.30235 -36.29499 -35.66380 -33.19424 -32.68002 -30.83061 -30.34440 -29.07022 -26.92649 -24.90381 -23.59466 -23.15310 -22.09886 -20.59057 -19.55730 -17.98509 -17.17852 -16.25808 -16.02210 -15.60689 -15.08942 -14.66500 -14.57839 -14.48105 -13.99546 -13.93239 -13.39513 -13.24241 -13.05267 -12.66986 -12.58179 -12.46119 -12.04831 -11.89604 -11.65766 -11.65320 -11.37597 -11.28226 -11.17471 -10.78057 -10.69316 -10.38284 -10.15076 -10.10517 -9.50363 -9.40994 -8.93679 -8.53737 -8.34452 -7.60839 -6.08213 -4.11025 -0.00869 0.62399 1.53938 1.67296 2.59399 2.80992 3.28208 3.36238 3.40628 3.40742 3.74540 3.95200 4.09102 4.38245 4.43166 4.66382 4.72058 4.82837 5.06719 5.14316 5.27244 5.33745 5.45437 5.50749 5.63854 5.69002 5.87859 5.91111 6.12431 6.17351 6.25878 6.33744 6.47181 6.66219 6.70302 7.01683 7.31483 7.59606 7.61477 7.73809 7.98066 8.09680 8.36134 8.95453 9.52850 11.01876 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.015022 B = 0.004642 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.516597 B = 6029.863306 C = 7306.258407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.069 3.931 3 N -0.481 5.481 4 C 0.199 3.801 5 C -0.519 4.519 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.891 5.891 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.402 3.598 14 N -0.491 5.491 15 C 0.187 3.813 16 C -0.098 4.098 17 C -0.086 4.086 18 C -0.128 4.128 19 C -0.081 4.081 20 C -0.129 4.129 21 C 0.075 3.925 22 Cl -0.033 7.033 23 C -0.068 4.068 24 C 0.270 3.730 25 N -0.398 5.398 26 H 0.078 0.922 27 H 0.056 0.944 28 H 0.047 0.953 29 H 0.101 0.899 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.143 0.857 35 H 0.131 0.869 36 H 0.128 0.872 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.727 2.701 17.542 18.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.056 4.056 3 N -0.198 5.198 4 C 0.076 3.924 5 C -0.557 4.557 6 H 0.082 0.918 7 C -0.141 4.141 8 N -0.529 5.529 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.154 3.846 14 N -0.205 5.205 15 C 0.062 3.938 16 C -0.117 4.117 17 C -0.106 4.106 18 C -0.146 4.146 19 C -0.100 4.100 20 C -0.132 4.132 21 C 0.037 3.963 22 Cl -0.003 7.003 23 C -0.077 4.077 24 C -0.046 4.046 25 N -0.073 5.073 26 H 0.097 0.903 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.120 0.880 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.161 0.839 35 H 0.149 0.851 36 H 0.146 0.854 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.342 1.749 16.747 17.389 hybrid contribution -0.062 -0.001 -0.078 0.099 sum -4.403 1.748 16.669 17.329 Atomic orbital electron populations 1.22388 0.97033 1.01406 1.03290 1.22087 0.93646 0.86967 1.02923 1.59591 1.54260 1.03797 1.02196 1.19871 0.96337 0.93707 0.82465 1.21164 1.23605 1.20607 0.90350 0.91817 1.24917 0.95187 0.95062 0.98910 1.69974 1.32938 1.27008 1.23004 0.86468 0.79458 0.79108 0.82575 1.19638 1.20994 1.20967 1.20116 0.85245 0.90149 0.89092 1.68547 1.11417 1.10602 1.29901 1.18895 0.94294 0.93785 0.86840 1.20900 0.95804 0.94919 1.00102 1.20993 0.99071 0.98328 0.92205 1.20847 0.96878 0.99010 0.97881 1.20966 0.96558 0.95282 0.97217 1.18407 0.98190 1.00362 0.96266 1.21324 0.93479 0.94848 0.86662 1.98397 1.79232 1.94569 1.28138 1.16539 0.97708 0.99964 0.93534 1.24730 0.92913 0.93243 0.93759 1.81152 1.09463 1.09518 1.07215 0.90343 0.92515 0.93438 0.88031 0.92523 0.94468 0.95347 0.92856 0.83874 0.85068 0.85369 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 9.26 37.16 0.34 -2.80 16 2 C 0.07 1.30 5.64 -3.82 -0.02 1.28 16 3 N -0.48 -10.18 4.18 -174.25 -0.73 -10.91 16 4 C 0.20 4.97 3.70 -4.97 -0.02 4.95 16 5 C -0.52 -14.01 8.47 -34.44 -0.29 -14.30 16 6 H 0.06 1.72 7.34 -52.49 -0.39 1.33 16 7 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -25.55 13.29 55.43 0.74 -24.82 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.40 7.60 4.71 -155.52 -0.73 6.86 16 14 N -0.49 -9.12 8.37 -9.98 -0.08 -9.20 16 15 C 0.19 2.87 6.61 -84.79 -0.56 2.31 16 16 C -0.10 -1.25 9.97 -39.47 -0.39 -1.64 16 17 C -0.09 -0.81 9.94 -39.94 -0.40 -1.21 16 18 C -0.13 -1.13 9.96 -39.93 -0.40 -1.52 16 19 C -0.08 -0.84 9.46 -39.48 -0.37 -1.22 16 20 C -0.13 -1.73 5.74 -106.77 -0.61 -2.35 16 21 C 0.07 1.05 6.42 -38.31 -0.25 0.81 16 22 Cl -0.03 -0.39 26.76 -51.86 -1.39 -1.77 16 23 C -0.07 -1.14 5.66 -106.43 -0.60 -1.74 16 24 C 0.27 4.67 12.37 -22.47 -0.28 4.39 16 25 N -0.40 -7.27 18.54 41.84 0.78 -6.49 16 26 H 0.08 1.53 6.55 -51.93 -0.34 1.19 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.81 6.78 -51.93 -0.35 0.45 16 29 H 0.10 2.00 7.01 -51.93 -0.36 1.63 16 30 H 0.06 0.97 6.60 -51.93 -0.34 0.63 16 31 H 0.04 1.03 7.83 -51.93 -0.41 0.62 16 32 H 0.03 0.75 6.00 -51.93 -0.31 0.44 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.14 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.13 1.12 7.03 -52.49 -0.37 0.75 16 LS Contribution 331.12 15.07 4.99 4.99 Total: -1.00 -29.65 331.12 -9.09 -38.74 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: -3.70 Total: -2.10 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -4.68 Total: -4.58 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: 0.70 Total: -51.42 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.39 Total: -1.77 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.65 -9.09 -38.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166592024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.319 kcal (2) G-P(sol) polarization free energy of solvation -29.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds