Wall clock time and date at job start Tue Mar 31 2020 10:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38375 * 119.61580 * 2 1 4 4 C 1.38099 * 118.99117 * 179.97438 * 3 2 1 5 5 C 1.38959 * 118.67461 * 359.97438 * 4 3 2 6 6 C 1.37964 * 119.13463 * 0.04428 * 5 4 3 7 7 N 1.31865 * 119.61801 * 179.97438 * 2 1 3 8 8 C 1.51006 * 108.19788 * 180.02562 * 5 4 3 9 9 N 1.48105 * 105.71145 * 342.64068 * 8 5 4 10 10 C 1.38401 * 110.99621 * 146.81813 * 9 8 5 11 11 N 1.32755 * 119.43743 * 244.89847 * 10 9 8 12 12 C 1.31467 * 121.74546 * 179.97438 * 11 10 9 13 13 C 1.40801 * 120.38475 * 359.97438 * 12 11 10 14 14 C 1.41194 * 120.56038 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99944 * 23.64981 * 14 13 12 16 16 C 1.39867 * 119.99902 * 203.64626 * 14 13 12 17 17 N 1.30902 * 119.99605 * 17.63594 * 16 14 13 18 18 Si 1.86794 * 119.99903 * 197.63091 * 16 14 13 19 19 H 1.48497 * 109.47255 * 60.00519 * 18 16 14 20 20 H 1.48502 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47408 * 299.99780 * 18 16 14 22 22 C 1.41280 * 118.87077 * 359.97438 * 13 12 11 23 23 C 1.36665 * 118.40176 * 359.75148 * 22 13 12 24 24 Cl 1.73601 * 120.26317 * 180.26119 * 23 22 13 25 25 C 1.48120 * 103.96331 * 27.40813 * 9 8 5 26 26 H 1.09000 * 109.46915 * 270.02098 * 1 2 3 27 27 H 1.08993 * 109.47266 * 30.01903 * 1 2 3 28 28 H 1.09005 * 109.47276 * 150.02576 * 1 2 3 29 29 H 1.08000 * 120.53221 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.71319 * 179.97438 * 6 5 4 31 31 H 1.08998 * 110.19808 * 223.57475 * 8 5 4 32 32 H 1.09001 * 110.26095 * 101.73424 * 8 5 4 33 33 H 1.07997 * 119.80965 * 179.97438 * 12 11 10 34 34 H 0.97006 * 119.99726 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.79361 * 180.02562 * 22 13 12 36 36 H 1.09000 * 110.20739 * 91.66103 * 25 9 8 37 37 H 1.08998 * 110.21069 * 213.47955 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1908 1.2030 0.0000 4 6 3.5717 1.1879 0.0005 5 6 4.2251 -0.0384 0.0016 6 6 3.4775 -1.1979 0.0012 7 7 2.1587 -1.1464 0.0005 8 6 5.7129 0.2199 0.0027 9 7 5.8756 1.6291 -0.4232 10 6 6.9668 2.2119 0.1972 11 7 6.7764 3.2167 1.0437 12 6 7.7798 3.8029 1.6584 13 6 9.1018 3.3742 1.4324 14 6 10.1822 4.0008 2.0910 15 1 10.0174 4.5236 3.0216 16 6 11.4657 3.9444 1.5382 17 7 11.6220 3.6289 0.2775 18 14 12.9567 4.3195 2.5991 19 1 13.0118 3.3612 3.7321 20 1 14.1903 4.1920 1.7821 21 1 12.8537 5.7039 3.1262 22 6 9.3287 2.3057 0.5364 23 6 8.2502 1.7274 -0.0720 24 17 8.4728 0.4067 -1.1765 25 6 4.6139 2.2786 0.0013 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6532 2.1397 0.0004 30 1 3.9757 -2.1561 0.0016 31 1 6.2111 -0.4462 -0.7018 32 1 6.1196 0.0801 1.0042 33 1 7.5890 4.6181 2.3406 34 1 12.5123 3.5895 -0.1058 35 1 10.3300 1.9516 0.3404 36 1 4.7230 2.6945 1.0029 37 1 4.3385 3.0631 -0.7036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167113154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:28 Heat of formation + Delta-G solvation = 75.187760 kcal Electronic energy + Delta-G solvation = -22773.906256 eV Core-core repulsion = 19348.894127 eV Total energy + Delta-G solvation = -3425.012129 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.89976 -39.13706 -37.10182 -35.62126 -34.32200 -32.67553 -32.20206 -30.81224 -29.53041 -28.81142 -26.68147 -25.60906 -23.92546 -22.23070 -21.80771 -20.80303 -20.45220 -17.70548 -17.11857 -16.18917 -15.88755 -15.52617 -15.36904 -14.81310 -14.61879 -14.39021 -14.14533 -13.60023 -13.25773 -12.85432 -12.80660 -12.59546 -12.36623 -12.27407 -12.04220 -11.91767 -11.76235 -11.55813 -11.34668 -11.29016 -11.01246 -10.79252 -10.44826 -9.91338 -9.79624 -9.52616 -9.47650 -9.00153 -8.58236 -8.44151 -8.22119 -7.40429 -7.06592 -4.68204 1.14925 1.33972 2.21802 2.58772 2.90246 2.91520 2.96683 3.12032 3.68230 3.78746 4.15665 4.26131 4.33922 4.51557 4.71117 5.05402 5.16666 5.26098 5.28377 5.43606 5.48324 5.61409 5.72466 5.82688 5.88668 5.94662 6.03705 6.11341 6.17835 6.33975 6.42289 6.46438 6.70585 6.75539 6.81515 6.91178 7.00592 7.42656 7.60974 7.85136 8.02723 8.11799 8.39397 8.39786 9.19082 9.81083 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.003249 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.922815 B = 8614.973458 C = 9237.491610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.120 3.880 3 C -0.155 4.155 4 C -0.048 4.048 5 C -0.156 4.156 6 C 0.118 3.882 7 N -0.487 5.487 8 C 0.084 3.916 9 N -0.427 5.427 10 C 0.142 3.858 11 N -0.472 5.472 12 C -0.007 4.007 13 C 0.066 3.934 14 C -0.437 4.437 15 H 0.089 0.911 16 C 0.072 3.928 17 N -0.777 5.777 18 Si 0.917 3.083 19 H -0.260 1.260 20 H -0.275 1.275 21 H -0.262 1.262 22 C -0.120 4.120 23 C -0.034 4.034 24 Cl -0.099 7.099 25 C 0.079 3.921 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.133 0.867 30 H 0.154 0.846 31 H 0.098 0.902 32 H 0.064 0.936 33 H 0.136 0.864 34 H 0.289 0.711 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.817 -4.473 0.218 10.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.018 4.018 3 C -0.176 4.176 4 C -0.057 4.057 5 C -0.159 4.159 6 C -0.038 4.038 7 N -0.197 5.197 8 C -0.044 4.044 9 N -0.146 5.146 10 C -0.088 4.088 11 N -0.183 5.183 12 C -0.169 4.169 13 C 0.061 3.939 14 C -0.465 4.465 15 H 0.107 0.893 16 C -0.149 4.149 17 N -0.401 5.401 18 Si 0.740 3.260 19 H -0.185 1.185 20 H -0.200 1.200 21 H -0.186 1.186 22 C -0.146 4.146 23 C -0.064 4.064 24 Cl -0.071 7.071 25 C -0.048 4.048 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.151 0.849 30 H 0.172 0.828 31 H 0.116 0.884 32 H 0.082 0.918 33 H 0.154 0.846 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.116 0.884 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.825 -5.068 -0.531 11.965 hybrid contribution 2.150 0.620 0.827 2.385 sum -8.675 -4.448 0.295 9.754 Atomic orbital electron populations 1.20649 0.88805 1.03264 1.02882 1.21205 0.96815 0.88150 0.95652 1.21201 0.92928 0.99362 1.04076 1.21124 0.94095 0.96624 0.93813 1.21742 0.97497 0.94816 1.01821 1.21973 0.88742 0.97315 0.95779 1.67568 1.09207 1.29152 1.13748 1.21746 0.90290 0.91668 1.00667 1.62587 1.00702 1.01183 1.50122 1.18604 0.88408 1.00501 1.01310 1.66920 1.36423 1.08766 1.06216 1.22361 0.88373 1.02097 1.04112 1.18433 0.93476 0.90576 0.91445 1.19533 0.91399 1.28480 1.07117 0.89301 1.26056 1.01283 0.92711 0.94848 1.69794 1.26157 1.32334 1.11771 0.86198 0.78979 0.80298 0.80486 1.18480 1.20004 1.18608 1.21339 0.97652 0.96068 0.99559 1.20919 0.94172 0.93705 0.97645 1.98259 1.97261 1.48179 1.63414 1.21514 0.85732 0.94372 1.03147 0.90605 0.90813 0.90624 0.84912 0.82838 0.88379 0.91818 0.84628 0.89948 0.84134 0.88382 0.89154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.17 36.00 0.37 -0.53 16 2 C 0.12 1.56 6.79 -82.53 -0.56 1.00 16 3 C -0.16 -2.06 9.74 -39.58 -0.39 -2.45 16 4 C -0.05 -0.75 6.34 -104.33 -0.66 -1.41 16 5 C -0.16 -2.46 6.31 -104.31 -0.66 -3.12 16 6 C 0.12 1.69 11.19 -17.59 -0.20 1.49 16 7 N -0.49 -7.07 10.27 -9.47 -0.10 -7.17 16 8 C 0.08 1.44 5.43 -4.16 -0.02 1.42 16 9 N -0.43 -8.30 5.17 -173.53 -0.90 -9.19 16 10 C 0.14 3.12 6.06 -155.05 -0.94 2.18 16 11 N -0.47 -10.60 8.11 -11.75 -0.10 -10.70 16 12 C -0.01 -0.15 10.97 -16.74 -0.18 -0.33 16 13 C 0.07 1.59 5.59 -106.65 -0.60 1.00 16 14 C -0.44 -10.25 9.06 -37.85 -0.34 -10.59 16 15 H 0.09 1.95 7.90 -52.49 -0.41 1.54 16 16 C 0.07 1.61 5.17 -17.34 -0.09 1.52 16 17 N -0.78 -18.25 10.92 55.54 0.61 -17.64 16 18 Si 0.92 16.76 29.59 -169.99 -5.03 11.73 16 19 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 20 H -0.28 -4.95 7.11 56.52 0.40 -4.55 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 C -0.12 -2.88 8.53 -38.99 -0.33 -3.21 16 23 C -0.03 -0.76 6.13 -39.57 -0.24 -1.00 16 24 Cl -0.10 -1.95 26.13 -51.86 -1.36 -3.30 16 25 C 0.08 1.38 6.22 -4.22 -0.03 1.35 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.53 8.08 -51.93 -0.42 0.11 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 30 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 31 H 0.10 1.63 6.59 -51.93 -0.34 1.29 16 32 H 0.06 1.15 7.79 -51.93 -0.40 0.75 16 33 H 0.14 2.81 8.06 -52.49 -0.42 2.38 16 34 H 0.29 6.18 8.30 -40.82 -0.34 5.84 16 35 H 0.14 3.48 6.19 -52.49 -0.32 3.15 16 36 H 0.10 1.82 6.55 -51.93 -0.34 1.48 16 37 H 0.09 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 325.21 15.07 4.90 4.90 Total: -1.00 -26.10 325.21 -10.76 -36.86 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -3.92 Total: 7.21 kcal Atomic # 6 Polarization: -7.82 SS G_CDS: -4.87 Total: -12.69 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: -0.48 Total: -44.70 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 17 Polarization: -1.95 SS G_CDS: -1.36 Total: -3.30 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -26.10 -10.76 -36.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167113154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.048 kcal (2) G-P(sol) polarization free energy of solvation -26.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds