Wall clock time and date at job start Tue Mar 31 2020 10:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38375 * 119.61580 * 2 1 4 4 C 1.38099 * 118.99117 * 179.97438 * 3 2 1 5 5 C 1.38959 * 118.67461 * 359.97438 * 4 3 2 6 6 C 1.37964 * 119.13463 * 0.04428 * 5 4 3 7 7 N 1.31865 * 119.61801 * 179.97438 * 2 1 3 8 8 C 1.51006 * 108.19788 * 180.02562 * 5 4 3 9 9 N 1.48105 * 105.71145 * 342.64068 * 8 5 4 10 10 C 1.38401 * 110.99621 * 146.81813 * 9 8 5 11 11 N 1.32755 * 119.43743 * 244.89847 * 10 9 8 12 12 C 1.31467 * 121.74546 * 179.97438 * 11 10 9 13 13 C 1.40801 * 120.38475 * 359.97438 * 12 11 10 14 14 C 1.41194 * 120.56038 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99944 * 23.64981 * 14 13 12 16 16 C 1.39867 * 119.99902 * 203.64626 * 14 13 12 17 17 N 1.30902 * 119.99605 * 17.63594 * 16 14 13 18 18 Si 1.86794 * 119.99903 * 197.63091 * 16 14 13 19 19 H 1.48497 * 109.47255 * 60.00519 * 18 16 14 20 20 H 1.48502 * 109.47084 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47408 * 299.99780 * 18 16 14 22 22 C 1.41280 * 118.87077 * 359.97438 * 13 12 11 23 23 C 1.36665 * 118.40176 * 359.75148 * 22 13 12 24 24 Cl 1.73601 * 120.26317 * 180.26119 * 23 22 13 25 25 C 1.48120 * 103.96331 * 27.40813 * 9 8 5 26 26 H 1.09000 * 109.46915 * 270.02098 * 1 2 3 27 27 H 1.08993 * 109.47266 * 30.01903 * 1 2 3 28 28 H 1.09005 * 109.47276 * 150.02576 * 1 2 3 29 29 H 1.08000 * 120.53221 * 0.02562 * 3 2 1 30 30 H 1.08000 * 119.71319 * 179.97438 * 6 5 4 31 31 H 1.08998 * 110.19808 * 223.57475 * 8 5 4 32 32 H 1.09001 * 110.26095 * 101.73424 * 8 5 4 33 33 H 1.07997 * 119.80965 * 179.97438 * 12 11 10 34 34 H 0.97006 * 119.99726 * 180.02562 * 17 16 14 35 35 H 1.07999 * 120.79361 * 180.02562 * 22 13 12 36 36 H 1.09000 * 110.20739 * 91.66103 * 25 9 8 37 37 H 1.08998 * 110.21069 * 213.47955 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1908 1.2030 0.0000 4 6 3.5717 1.1879 0.0005 5 6 4.2251 -0.0384 0.0016 6 6 3.4775 -1.1979 0.0012 7 7 2.1587 -1.1464 0.0005 8 6 5.7129 0.2199 0.0027 9 7 5.8756 1.6291 -0.4232 10 6 6.9668 2.2119 0.1972 11 7 6.7764 3.2167 1.0437 12 6 7.7798 3.8029 1.6584 13 6 9.1018 3.3742 1.4324 14 6 10.1822 4.0008 2.0910 15 1 10.0174 4.5236 3.0216 16 6 11.4657 3.9444 1.5382 17 7 11.6220 3.6289 0.2775 18 14 12.9567 4.3195 2.5991 19 1 13.0118 3.3612 3.7321 20 1 14.1903 4.1920 1.7821 21 1 12.8537 5.7039 3.1262 22 6 9.3287 2.3057 0.5364 23 6 8.2502 1.7274 -0.0720 24 17 8.4728 0.4067 -1.1765 25 6 4.6139 2.2786 0.0013 26 1 -0.3633 0.0004 1.0277 27 1 -0.3633 0.8897 -0.5141 28 1 -0.3634 -0.8902 -0.5135 29 1 1.6532 2.1397 0.0004 30 1 3.9757 -2.1561 0.0016 31 1 6.2111 -0.4462 -0.7018 32 1 6.1196 0.0801 1.0042 33 1 7.5890 4.6181 2.3406 34 1 12.5123 3.5895 -0.1058 35 1 10.3300 1.9516 0.3404 36 1 4.7230 2.6945 1.0029 37 1 4.3385 3.0631 -0.7036 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167113154.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:27 Heat of formation + Delta-G solvation = 62.369942 kcal Electronic energy + Delta-G solvation = -22774.462079 eV Core-core repulsion = 19348.894127 eV Total energy + Delta-G solvation = -3425.567951 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.15989 -40.67642 -38.55259 -37.30162 -35.98947 -33.78600 -33.50377 -32.55574 -31.09476 -30.05965 -28.01166 -26.99333 -25.34872 -23.87695 -23.17882 -22.32030 -21.71226 -19.45603 -18.52884 -17.65749 -17.37863 -16.86092 -16.66722 -16.26619 -16.00567 -15.84754 -15.32124 -14.96354 -14.67917 -14.40114 -14.16471 -14.02489 -13.64089 -13.51601 -13.28442 -13.25162 -13.08359 -12.98227 -12.86444 -12.67598 -12.50279 -12.29729 -11.99930 -11.55799 -11.32444 -10.96810 -10.60408 -10.41315 -10.20220 -10.03024 -9.66915 -9.08825 -8.75333 -6.46571 0.06057 0.20368 0.47525 0.79733 1.37751 1.40444 1.49594 1.53546 2.15544 2.51081 2.70072 2.85385 3.17524 3.28518 3.48643 3.53991 3.95034 3.98476 4.11613 4.32271 4.39011 4.41831 4.55270 4.61437 4.66703 4.73143 4.77543 4.83297 4.85051 4.95928 5.08481 5.11100 5.15980 5.17751 5.27728 5.48751 5.66827 5.71616 5.84053 6.14537 6.37635 6.63279 6.64616 6.95858 7.41638 8.14633 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.028655 B = 0.003249 C = 0.003030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.922815 B = 8614.973458 C = 9237.491610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.120 3.880 3 C -0.153 4.153 4 C -0.061 4.061 5 C -0.174 4.174 6 C 0.119 3.881 7 N -0.501 5.501 8 C 0.092 3.908 9 N -0.438 5.438 10 C 0.143 3.857 11 N -0.476 5.476 12 C -0.016 4.016 13 C 0.042 3.958 14 C -0.462 4.462 15 H 0.097 0.903 16 C 0.035 3.965 17 N -0.809 5.809 18 Si 0.988 3.012 19 H -0.258 1.258 20 H -0.270 1.270 21 H -0.255 1.255 22 C -0.137 4.137 23 C -0.045 4.045 24 Cl -0.077 7.077 25 C 0.084 3.916 26 H 0.090 0.910 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.161 0.839 30 H 0.175 0.825 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.152 0.848 34 H 0.296 0.704 35 H 0.129 0.871 36 H 0.084 0.916 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.166 -4.690 0.463 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.018 4.018 3 C -0.173 4.173 4 C -0.069 4.069 5 C -0.176 4.176 6 C -0.037 4.037 7 N -0.211 5.211 8 C -0.035 4.035 9 N -0.157 5.157 10 C -0.088 4.088 11 N -0.187 5.187 12 C -0.178 4.178 13 C 0.037 3.963 14 C -0.490 4.490 15 H 0.115 0.885 16 C -0.183 4.183 17 N -0.433 5.433 18 Si 0.808 3.192 19 H -0.183 1.183 20 H -0.194 1.194 21 H -0.179 1.179 22 C -0.163 4.163 23 C -0.076 4.076 24 Cl -0.049 7.049 25 C -0.043 4.043 26 H 0.108 0.892 27 H 0.115 0.885 28 H 0.097 0.903 29 H 0.179 0.821 30 H 0.192 0.808 31 H 0.118 0.882 32 H 0.067 0.933 33 H 0.169 0.831 34 H 0.107 0.893 35 H 0.146 0.854 36 H 0.102 0.898 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.200 -5.291 -0.294 13.301 hybrid contribution 2.414 0.622 0.667 2.580 sum -9.786 -4.669 0.373 10.849 Atomic orbital electron populations 1.20778 0.85814 1.04608 1.04176 1.21898 0.98753 0.87526 0.93643 1.21520 0.91925 1.00894 1.02918 1.21087 0.94962 0.95666 0.95189 1.21632 0.96387 0.95715 1.03916 1.22292 0.88876 0.97698 0.94806 1.67691 1.09099 1.29997 1.14277 1.21585 0.91827 0.90288 0.99818 1.62508 1.00900 1.02382 1.49928 1.18887 0.89177 1.00104 1.00587 1.67004 1.36250 1.09089 1.06406 1.22650 0.88169 1.02534 1.04479 1.18734 0.94395 0.91114 0.92083 1.19842 0.92191 1.29293 1.07668 0.88460 1.26900 1.03663 0.91971 0.95733 1.69845 1.27199 1.33003 1.13289 0.85128 0.75261 0.80232 0.78545 1.18256 1.19404 1.17860 1.21297 0.97500 0.96827 1.00679 1.21033 0.94172 0.94390 0.97957 1.98250 1.97237 1.46888 1.62480 1.21424 0.85507 0.95041 1.02353 0.89152 0.88511 0.90296 0.82118 0.80772 0.88162 0.93257 0.83053 0.89305 0.85365 0.89789 0.88802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.17 71.23 0.72 -0.69 16 2 C 0.12 2.80 6.79 42.58 0.29 3.08 16 3 C -0.15 -3.69 9.74 22.27 0.22 -3.47 16 4 C -0.06 -1.83 6.34 -19.67 -0.12 -1.95 16 5 C -0.17 -5.35 6.31 -19.66 -0.12 -5.47 16 6 C 0.12 3.23 11.19 84.61 0.95 4.18 16 7 N -0.50 -13.46 10.27 -183.88 -1.89 -15.35 16 8 C 0.09 3.18 5.43 85.42 0.46 3.65 16 9 N -0.44 -17.13 5.17 -702.93 -3.63 -20.77 16 10 C 0.14 6.40 6.06 133.32 0.81 7.20 16 11 N -0.48 -21.76 8.11 -191.08 -1.55 -23.31 16 12 C -0.02 -0.74 10.97 85.37 0.94 0.20 16 13 C 0.04 2.09 5.59 -21.18 -0.12 1.97 16 14 C -0.46 -22.03 9.06 23.39 0.21 -21.82 16 15 H 0.10 4.31 7.90 -2.91 -0.02 4.28 16 16 C 0.04 1.59 5.17 85.23 0.44 2.03 16 17 N -0.81 -38.67 10.92 21.82 0.24 -38.43 16 18 Si 0.99 34.03 29.59 68.60 2.03 36.06 16 19 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 20 H -0.27 -8.94 7.11 99.48 0.71 -8.23 16 21 H -0.25 -8.43 7.11 99.48 0.71 -7.72 16 22 C -0.14 -6.78 8.53 22.65 0.19 -6.58 16 23 C -0.04 -2.07 6.13 22.28 0.14 -1.93 16 24 Cl -0.08 -3.04 26.13 -2.72 -0.07 -3.11 16 25 C 0.08 2.89 6.22 85.37 0.53 3.42 16 26 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.10 0.99 8.08 -2.39 -0.02 0.97 16 28 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.16 2.89 8.06 -2.91 -0.02 2.86 16 30 H 0.18 3.79 8.06 -2.91 -0.02 3.77 16 31 H 0.10 3.34 6.59 -2.39 -0.02 3.32 16 32 H 0.05 1.83 7.79 -2.39 -0.02 1.81 16 33 H 0.15 6.35 8.06 -2.91 -0.02 6.33 16 34 H 0.30 12.79 8.30 -92.70 -0.77 12.02 16 35 H 0.13 6.59 6.19 -2.91 -0.02 6.57 16 36 H 0.08 3.14 6.55 -2.39 -0.02 3.12 16 37 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -56.50 325.21 1.77 -54.73 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: 1.11 Total: 26.36 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.53 Total: -16.18 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -6.83 Total: -97.85 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 17 Polarization: -3.04 SS G_CDS: -0.07 Total: -3.11 kcal Total: -56.50 1.77 -54.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167113154.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.098 kcal (2) G-P(sol) polarization free energy of solvation -56.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds