Wall clock time and date at job start Tue Mar 31 2020 11:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46555 * 2 1 4 4 C 1.52999 * 109.47039 * 120.00062 * 2 1 3 5 5 C 1.50709 * 109.46775 * 185.00039 * 4 2 1 6 6 C 1.38236 * 119.98613 * 269.72702 * 5 4 2 7 7 C 1.38216 * 120.00969 * 179.72773 * 6 5 4 8 8 C 1.38352 * 119.98731 * 0.54622 * 7 6 5 9 9 Cl 1.73597 * 120.01068 * 179.70225 * 8 7 6 10 10 C 1.38355 * 119.97083 * 359.72910 * 8 7 6 11 11 C 1.38208 * 119.98885 * 359.97438 * 10 8 7 12 12 N 1.46506 * 109.46911 * 240.00369 * 2 1 3 13 13 C 1.38222 * 120.00037 * 84.67987 * 12 2 1 14 14 C 1.38992 * 120.00220 * 5.25446 * 13 12 2 15 15 H 1.07999 * 120.00066 * 46.89570 * 14 13 12 16 16 C 1.40819 * 119.99843 * 226.89583 * 14 13 12 17 17 N 1.30334 * 120.00177 * 16.17129 * 16 14 13 18 18 Si 1.86795 * 119.99677 * 196.16940 * 16 14 13 19 19 H 1.48504 * 109.47308 * 60.00088 * 18 16 14 20 20 H 1.48499 * 109.47267 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47483 * 299.99951 * 18 16 14 22 22 C 1.41150 * 119.99958 * 185.25921 * 13 12 2 23 23 C 1.43197 * 120.00218 * 186.34579 * 22 13 12 24 24 N 5.93750 * 104.12425 * 276.14887 * 2 1 3 25 25 C 1.43203 * 119.99981 * 6.33598 * 22 13 12 26 26 N 4.95292 * 103.63833 * 227.49449 * 2 1 3 27 27 H 1.09002 * 109.47077 * 299.99724 * 1 2 3 28 28 H 1.09005 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47163 * 60.00093 * 1 2 3 30 30 H 1.08999 * 109.47192 * 304.99798 * 4 2 1 31 31 H 1.08990 * 109.46957 * 65.00336 * 4 2 1 32 32 H 1.08007 * 119.99418 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.00409 * 180.26814 * 7 6 5 34 34 H 1.08001 * 120.00177 * 180.02562 * 10 8 7 35 35 H 1.08003 * 119.99395 * 179.97438 * 11 10 8 36 36 H 0.96999 * 119.99336 * 264.66978 * 12 2 1 37 37 H 0.97006 * 120.00065 * 184.93002 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.3289 -1.5846 0.7201 7 6 5.7064 -1.4846 0.7731 8 6 6.2977 -0.4196 1.4291 9 17 8.0278 -0.2975 1.5027 10 6 5.5095 0.5476 2.0269 11 6 4.1321 0.4498 1.9679 12 7 2.0183 -0.6906 -1.1963 13 6 2.1440 -0.0026 -2.3885 14 6 1.9123 1.3673 -2.4282 15 1 2.3528 2.0113 -1.6815 16 6 1.1032 1.9155 -3.4420 17 7 0.3243 1.1414 -4.1441 18 14 1.1464 3.7520 -3.7807 19 1 2.5238 4.1523 -4.1652 20 1 0.2098 4.0734 -4.8874 21 1 0.7393 4.4905 -2.5583 22 6 2.5076 -0.6912 -3.5658 23 6 2.7705 0.0381 -4.7697 24 7 2.9789 0.6168 -5.7249 25 6 2.6137 -2.1193 -3.5561 26 7 2.6979 -3.2521 -3.5484 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2055 32 1 3.8673 -2.4181 0.2114 33 1 6.3212 -2.2400 0.3064 34 1 5.9705 1.3794 2.5388 35 1 3.5167 1.2046 2.4349 36 1 2.2535 -1.6305 -1.1515 37 1 -0.1789 1.5065 -4.8887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168153135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:32 Heat of formation + Delta-G solvation = 59.442787 kcal Electronic energy + Delta-G solvation = -23005.484884 eV Core-core repulsion = 19579.790002 eV Total energy + Delta-G solvation = -3425.694882 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.59737 -37.75504 -36.51611 -35.49869 -34.69126 -33.80011 -32.51209 -31.06625 -30.69051 -28.34483 -26.82792 -26.22223 -22.87612 -22.15220 -21.14657 -20.59982 -18.31897 -17.25735 -16.97417 -16.20757 -15.72618 -15.32693 -15.27174 -14.62510 -13.91514 -13.64651 -13.53076 -13.22163 -13.02800 -12.69134 -12.51629 -12.35465 -12.16106 -12.00596 -11.79823 -11.70874 -11.43475 -11.37960 -11.31220 -11.30477 -11.15220 -10.95225 -10.81822 -10.72095 -10.66214 -10.50033 -10.10212 -9.71268 -9.10410 -9.00806 -8.50523 -7.12161 -6.46157 -5.10158 1.14912 1.30907 2.12764 2.70632 3.02178 3.02751 3.15031 3.62266 3.78612 3.98200 4.05329 4.26471 4.58904 4.66426 4.73804 4.77282 4.88208 5.18731 5.23550 5.32375 5.44550 5.53839 5.58171 5.77902 5.80152 5.85735 5.93329 5.94432 6.09672 6.21742 6.25064 6.37900 6.56142 6.64391 6.74430 6.81430 6.82770 7.15650 7.42906 7.84515 8.31198 8.49570 8.66679 9.07424 9.49116 9.86786 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.004419 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.002668 B = 6334.919543 C = 6495.078349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.161 3.839 3 H 0.089 0.911 4 C -0.095 4.095 5 C -0.066 4.066 6 C -0.095 4.095 7 C -0.105 4.105 8 C -0.040 4.040 9 Cl -0.081 7.081 10 C -0.110 4.110 11 C -0.105 4.105 12 N -0.729 5.729 13 C 0.461 3.539 14 C -0.493 4.493 15 H 0.097 0.903 16 C 0.103 3.897 17 N -0.750 5.750 18 Si 0.904 3.096 19 H -0.258 1.258 20 H -0.275 1.275 21 H -0.263 1.263 22 C -0.292 4.292 23 C 0.353 3.647 24 N -0.544 5.544 25 C 0.306 3.694 26 N -0.545 5.545 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.382 0.618 37 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 1.688 16.477 16.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.056 3.944 3 H 0.107 0.893 4 C -0.133 4.133 5 C -0.066 4.066 6 C -0.113 4.113 7 C -0.123 4.123 8 C -0.066 4.066 9 Cl -0.052 7.052 10 C -0.128 4.128 11 C -0.123 4.123 12 N -0.355 5.355 13 C 0.346 3.654 14 C -0.526 4.526 15 H 0.114 0.886 16 C -0.125 4.125 17 N -0.372 5.372 18 Si 0.727 3.273 19 H -0.182 1.182 20 H -0.200 1.200 21 H -0.187 1.187 22 C -0.312 4.312 23 C 0.044 3.956 24 N -0.227 5.227 25 C 0.000 4.000 26 N -0.229 5.229 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.216 0.784 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.073 0.935 15.052 15.391 hybrid contribution 0.073 0.666 -0.025 0.671 sum 3.146 1.601 15.027 15.436 Atomic orbital electron populations 1.22190 0.95537 1.01722 1.02529 1.20743 0.93630 0.97222 0.82821 0.89266 1.21061 0.90699 1.02296 0.99208 1.19942 0.95994 0.94343 0.96350 1.21008 0.92617 0.99210 0.98485 1.21034 0.95232 0.97334 0.98728 1.20882 0.84123 0.98317 1.03299 1.98357 1.11409 1.98017 1.97418 1.20977 0.93588 0.98220 1.00052 1.20968 0.93766 0.97947 0.99625 1.45271 1.69917 1.11435 1.08882 1.16987 0.77548 0.90164 0.80738 1.18892 1.29060 0.91181 1.13425 0.88554 1.25734 0.92398 1.00825 0.93528 1.69480 1.15585 1.38956 1.13158 0.86389 0.80142 0.81828 0.78962 1.18184 1.19968 1.18698 1.12675 1.44982 0.81740 0.91774 1.24353 0.89020 0.91407 0.90845 1.80946 1.19434 1.09986 1.12302 1.25498 0.90075 0.92109 0.92327 1.81055 1.20001 1.12426 1.09375 0.92896 0.93213 0.90471 0.89572 0.90540 0.85405 0.85161 0.85272 0.85147 0.78376 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 9.49 37.16 0.35 -1.75 16 2 C 0.16 2.14 2.44 -67.93 -0.17 1.98 16 3 H 0.09 1.25 6.58 -51.93 -0.34 0.91 16 4 C -0.09 -0.98 4.89 -27.88 -0.14 -1.11 16 5 C -0.07 -0.76 4.95 -104.62 -0.52 -1.27 16 6 C -0.09 -1.17 9.10 -39.59 -0.36 -1.53 16 7 C -0.10 -1.31 9.83 -39.55 -0.39 -1.69 16 8 C -0.04 -0.49 6.32 -39.50 -0.25 -0.74 16 9 Cl -0.08 -0.94 28.96 -51.86 -1.50 -2.44 16 10 C -0.11 -1.22 9.83 -39.55 -0.39 -1.61 16 11 C -0.10 -1.12 9.70 -39.59 -0.38 -1.50 16 12 N -0.73 -12.09 4.57 -51.91 -0.24 -12.33 16 13 C 0.46 9.47 6.12 -83.60 -0.51 8.96 16 14 C -0.49 -10.28 7.22 -38.33 -0.28 -10.55 16 15 H 0.10 1.88 7.03 -52.49 -0.37 1.51 16 16 C 0.10 2.23 4.18 -17.21 -0.07 2.16 16 17 N -0.75 -17.33 11.51 55.59 0.64 -16.69 16 18 Si 0.90 17.49 29.60 -169.99 -5.03 12.45 16 19 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 20 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 C -0.29 -6.72 5.39 -104.94 -0.57 -7.28 16 23 C 0.35 8.88 12.00 -22.47 -0.27 8.61 16 24 N -0.54 -14.24 18.54 41.84 0.78 -13.46 16 25 C 0.31 7.01 14.12 -22.47 -0.32 6.69 16 26 N -0.54 -12.68 18.54 41.84 0.78 -11.90 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.24 8.04 -51.93 -0.42 0.83 16 30 H 0.09 0.71 8.09 -51.93 -0.42 0.29 16 31 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 32 H 0.13 1.54 7.58 -52.48 -0.40 1.14 16 33 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 34 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 36 H 0.38 6.25 6.71 -40.82 -0.27 5.98 16 37 H 0.29 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 349.46 15.07 5.27 5.27 Total: -1.00 -26.42 349.46 -7.45 -33.87 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -3.89 Total: 5.89 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.25 Total: -0.66 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 1.95 Total: -54.38 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.42 -7.45 -33.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168153135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.317 kcal (2) G-P(sol) polarization free energy of solvation -26.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds