Wall clock time and date at job start Tue Mar 31 2020 11:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46555 * 2 1 4 4 C 1.52999 * 109.47039 * 120.00062 * 2 1 3 5 5 C 1.50709 * 109.46775 * 185.00039 * 4 2 1 6 6 C 1.38236 * 119.98613 * 269.72702 * 5 4 2 7 7 C 1.38216 * 120.00969 * 179.72773 * 6 5 4 8 8 C 1.38352 * 119.98731 * 0.54622 * 7 6 5 9 9 Cl 1.73597 * 120.01068 * 179.70225 * 8 7 6 10 10 C 1.38355 * 119.97083 * 359.72910 * 8 7 6 11 11 C 1.38208 * 119.98885 * 359.97438 * 10 8 7 12 12 N 1.46506 * 109.46911 * 240.00369 * 2 1 3 13 13 C 1.38222 * 120.00037 * 84.67987 * 12 2 1 14 14 C 1.38992 * 120.00220 * 5.25446 * 13 12 2 15 15 H 1.07999 * 120.00066 * 46.89570 * 14 13 12 16 16 C 1.40819 * 119.99843 * 226.89583 * 14 13 12 17 17 N 1.30334 * 120.00177 * 16.17129 * 16 14 13 18 18 Si 1.86795 * 119.99677 * 196.16940 * 16 14 13 19 19 H 1.48504 * 109.47308 * 60.00088 * 18 16 14 20 20 H 1.48499 * 109.47267 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47483 * 299.99951 * 18 16 14 22 22 C 1.41150 * 119.99958 * 185.25921 * 13 12 2 23 23 C 1.43197 * 120.00218 * 186.34579 * 22 13 12 24 24 N 5.93750 * 104.12425 * 276.14887 * 2 1 3 25 25 C 1.43203 * 119.99981 * 6.33598 * 22 13 12 26 26 N 4.95292 * 103.63833 * 227.49449 * 2 1 3 27 27 H 1.09002 * 109.47077 * 299.99724 * 1 2 3 28 28 H 1.09005 * 109.47116 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47163 * 60.00093 * 1 2 3 30 30 H 1.08999 * 109.47192 * 304.99798 * 4 2 1 31 31 H 1.08990 * 109.46957 * 65.00336 * 4 2 1 32 32 H 1.08007 * 119.99418 * 0.02562 * 6 5 4 33 33 H 1.07999 * 120.00409 * 180.26814 * 7 6 5 34 34 H 1.08001 * 120.00177 * 180.02562 * 10 8 7 35 35 H 1.08003 * 119.99395 * 179.97438 * 11 10 8 36 36 H 0.96999 * 119.99336 * 264.66978 * 12 2 1 37 37 H 0.97006 * 120.00065 * 184.93002 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.6149 1.3127 6 6 4.3289 -1.5846 0.7201 7 6 5.7064 -1.4846 0.7731 8 6 6.2977 -0.4196 1.4291 9 17 8.0278 -0.2975 1.5027 10 6 5.5095 0.5476 2.0269 11 6 4.1321 0.4498 1.9679 12 7 2.0183 -0.6906 -1.1963 13 6 2.1440 -0.0026 -2.3885 14 6 1.9123 1.3673 -2.4282 15 1 2.3528 2.0113 -1.6815 16 6 1.1032 1.9155 -3.4420 17 7 0.3243 1.1414 -4.1441 18 14 1.1464 3.7520 -3.7807 19 1 2.5238 4.1523 -4.1652 20 1 0.2098 4.0734 -4.8874 21 1 0.7393 4.4905 -2.5583 22 6 2.5076 -0.6912 -3.5658 23 6 2.7705 0.0381 -4.7697 24 7 2.9789 0.6168 -5.7249 25 6 2.6137 -2.1193 -3.5561 26 7 2.6979 -3.2521 -3.5484 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 -0.8900 30 1 1.6054 -0.2617 2.1370 31 1 1.7517 -1.7714 1.2055 32 1 3.8673 -2.4181 0.2114 33 1 6.3212 -2.2400 0.3064 34 1 5.9705 1.3794 2.5388 35 1 3.5167 1.2046 2.4349 36 1 2.2535 -1.6305 -1.1515 37 1 -0.1789 1.5065 -4.8887 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168153135.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:31 Heat of formation + Delta-G solvation = 48.104785 kcal Electronic energy + Delta-G solvation = -23005.976537 eV Core-core repulsion = 19579.790002 eV Total energy + Delta-G solvation = -3426.186535 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.52134 -39.13363 -37.55047 -36.99413 -36.52775 -35.45690 -33.90076 -31.93097 -31.81874 -29.79667 -28.50484 -27.16406 -23.76832 -23.39832 -22.41387 -21.75655 -20.08659 -18.74293 -17.98696 -17.61959 -17.09111 -16.51530 -16.19476 -15.86063 -14.97132 -14.81514 -14.61755 -14.45953 -14.37039 -14.22905 -13.95737 -13.74411 -13.63224 -13.40865 -13.23938 -13.07081 -12.97127 -12.84357 -12.76572 -12.56836 -12.43786 -12.27732 -12.13467 -11.99258 -11.80064 -11.68815 -11.49788 -11.21580 -10.64766 -9.89876 -9.40591 -8.79582 -8.09841 -6.81831 0.25727 0.43597 1.07638 1.22995 1.44637 1.50876 1.58161 2.13896 2.20130 2.37524 2.49066 2.73971 2.83437 3.03861 3.62499 3.86621 3.91305 4.02671 4.04146 4.21420 4.39454 4.47704 4.60009 4.67713 4.78067 4.86436 4.87107 5.05522 5.10514 5.12096 5.13326 5.33108 5.36186 5.36346 5.62515 5.67852 5.68060 5.86099 5.96644 6.24834 6.64506 6.92914 7.13292 7.28194 7.57340 8.19768 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.011807 B = 0.004419 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.002668 B = 6334.919543 C = 6495.078349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 H 0.088 0.912 4 C -0.085 4.085 5 C -0.072 4.072 6 C -0.109 4.109 7 C -0.122 4.122 8 C -0.053 4.053 9 Cl -0.082 7.082 10 C -0.114 4.114 11 C -0.102 4.102 12 N -0.717 5.717 13 C 0.469 3.531 14 C -0.496 4.496 15 H 0.113 0.887 16 C 0.077 3.923 17 N -0.779 5.779 18 Si 0.944 3.056 19 H -0.276 1.276 20 H -0.282 1.282 21 H -0.233 1.233 22 C -0.315 4.315 23 C 0.352 3.648 24 N -0.575 5.575 25 C 0.310 3.690 26 N -0.557 5.557 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.043 0.957 30 H 0.119 0.881 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.384 0.616 37 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 2.840 19.092 19.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.053 3.947 3 H 0.106 0.894 4 C -0.122 4.122 5 C -0.073 4.073 6 C -0.127 4.127 7 C -0.140 4.140 8 C -0.079 4.079 9 Cl -0.053 7.053 10 C -0.132 4.132 11 C -0.120 4.120 12 N -0.340 5.340 13 C 0.350 3.650 14 C -0.529 4.529 15 H 0.131 0.869 16 C -0.147 4.147 17 N -0.402 5.402 18 Si 0.766 3.234 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.156 1.156 22 C -0.336 4.336 23 C 0.045 3.955 24 N -0.259 5.259 25 C 0.005 3.995 26 N -0.241 5.241 27 H 0.104 0.896 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.138 0.862 31 H 0.100 0.900 32 H 0.142 0.858 33 H 0.147 0.853 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.218 0.782 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.439 2.071 17.726 18.013 hybrid contribution 0.280 0.295 -0.757 0.859 sum 2.719 2.366 16.970 17.348 Atomic orbital electron populations 1.22111 0.95004 1.01732 1.02487 1.21005 0.93921 0.97265 0.82527 0.89383 1.21023 0.89907 1.02609 0.98657 1.20110 0.96534 0.94327 0.96291 1.21109 0.92751 0.99774 0.99084 1.21140 0.95605 0.97849 0.99441 1.21057 0.84313 0.98746 1.03780 1.98353 1.11522 1.98018 1.97437 1.21275 0.93990 0.98305 0.99669 1.21318 0.93820 0.98012 0.98822 1.45390 1.68239 1.11509 1.08899 1.16989 0.76490 0.90252 0.81313 1.19144 1.28593 0.91520 1.13654 0.86905 1.26290 0.92023 1.03230 0.93190 1.69547 1.16692 1.40153 1.13765 0.85779 0.78757 0.79140 0.79723 1.20074 1.20765 1.15566 1.12893 1.46835 0.81746 0.92128 1.24776 0.88510 0.91127 0.91038 1.80916 1.21115 1.10837 1.13038 1.25495 0.89804 0.92049 0.92127 1.81045 1.20846 1.12572 1.09638 0.89604 0.93196 0.93808 0.86244 0.90008 0.85786 0.85323 0.83502 0.82267 0.78169 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.60 9.49 71.98 0.68 -2.92 16 2 C 0.16 3.70 2.44 44.99 0.11 3.81 16 3 H 0.09 2.16 6.58 -2.39 -0.02 2.14 16 4 C -0.08 -1.43 4.89 29.85 0.15 -1.28 16 5 C -0.07 -1.45 4.95 -19.86 -0.10 -1.55 16 6 C -0.11 -2.56 9.10 22.26 0.20 -2.35 16 7 C -0.12 -2.97 9.83 22.29 0.22 -2.75 16 8 C -0.05 -1.22 6.32 22.32 0.14 -1.08 16 9 Cl -0.08 -1.84 28.96 -2.72 -0.08 -1.92 16 10 C -0.11 -2.24 9.83 22.29 0.22 -2.02 16 11 C -0.10 -1.81 9.70 22.26 0.22 -1.59 16 12 N -0.72 -22.66 4.57 -318.16 -1.45 -24.12 16 13 C 0.47 18.85 6.12 39.03 0.24 19.08 16 14 C -0.50 -20.02 7.22 23.08 0.17 -19.85 16 15 H 0.11 4.13 7.03 -2.91 -0.02 4.11 16 16 C 0.08 3.30 4.18 85.55 0.36 3.66 16 17 N -0.78 -36.07 11.51 21.97 0.25 -35.82 16 18 Si 0.94 34.80 29.60 68.60 2.03 36.83 16 19 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 20 H -0.28 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.23 -7.45 7.11 99.48 0.71 -6.74 16 22 C -0.32 -14.55 5.39 -20.07 -0.11 -14.65 16 23 C 0.35 17.95 12.00 88.33 1.06 19.01 16 24 N -0.58 -30.52 18.54 19.00 0.35 -30.17 16 25 C 0.31 14.24 14.12 88.33 1.25 15.49 16 26 N -0.56 -25.85 18.54 19.00 0.35 -25.49 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.04 1.33 8.04 -2.38 -0.02 1.31 16 30 H 0.12 1.30 8.09 -2.39 -0.02 1.28 16 31 H 0.08 1.34 8.08 -2.39 -0.02 1.33 16 32 H 0.12 2.91 7.58 -2.91 -0.02 2.89 16 33 H 0.13 3.03 8.06 -2.91 -0.02 3.00 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 35 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 36 H 0.38 12.10 6.71 -92.71 -0.62 11.48 16 37 H 0.29 13.12 8.29 -92.70 -0.77 12.35 16 Total: -1.00 -56.86 349.46 6.76 -50.10 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: 0.51 Total: 19.58 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 4.80 Total: 11.00 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -0.50 Total: -115.60 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 17 Polarization: -1.84 SS G_CDS: -0.08 Total: -1.92 kcal Total: -56.86 6.76 -50.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168153135.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.204 kcal (2) G-P(sol) polarization free energy of solvation -56.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds