Wall clock time and date at job start Tue Mar 31 2020 11:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00205 * 2 1 4 4 O 1.21577 * 119.99553 * 0.02562 * 3 2 1 5 5 C 1.47694 * 120.00340 * 180.02562 * 3 2 1 6 6 C 1.39934 * 120.53763 * 0.02562 * 5 3 2 7 7 C 1.38984 * 118.24894 * 180.02562 * 6 5 3 8 8 N 1.39922 * 120.38621 * 179.97438 * 7 6 5 9 9 C 1.38277 * 119.99969 * 170.92351 * 8 7 6 10 10 C 1.39009 * 119.99758 * 300.38320 * 9 8 7 11 11 H 1.08004 * 120.00023 * 158.44551 * 10 9 8 12 12 C 1.40826 * 120.00269 * 338.44615 * 10 9 8 13 13 N 1.30337 * 120.00040 * 356.94856 * 12 10 9 14 14 Si 1.86798 * 120.00123 * 176.95001 * 12 10 9 15 15 H 1.48504 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47221 * 119.99710 * 14 12 10 17 17 H 1.48501 * 109.47330 * 240.00124 * 14 12 10 18 18 C 1.41168 * 119.99910 * 120.38344 * 9 8 7 19 19 C 1.43196 * 119.99847 * 185.16077 * 18 9 8 20 20 N 9.88789 * 171.70178 * 157.41595 * 2 1 3 21 21 C 1.43198 * 120.00008 * 5.16448 * 18 9 8 22 22 N 7.45550 * 147.52176 * 134.12694 * 2 1 3 23 23 C 1.39000 * 119.22852 * 359.97438 * 7 6 5 24 24 N 1.31869 * 121.02129 * 0.02562 * 23 7 6 25 25 C 1.31911 * 121.92822 * 359.97438 * 24 23 7 26 26 F 1.35108 * 119.67095 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47305 * 299.99503 * 1 2 3 28 28 H 1.08997 * 109.47583 * 60.00019 * 1 2 3 29 29 H 1.09007 * 109.47100 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.07996 * 120.87940 * 0.04202 * 6 5 3 32 32 H 0.96998 * 120.00531 * 350.92064 * 8 7 6 33 33 H 0.96994 * 120.00039 * 185.01930 * 13 12 10 34 34 H 1.08002 * 119.48683 * 179.72558 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2200 0.0005 5 6 3.6158 1.1672 -0.0006 6 6 4.3268 -0.0381 -0.0017 7 6 5.7156 0.0175 -0.0016 8 7 6.4710 -1.1603 -0.0021 9 6 7.8396 -1.1037 -0.1910 10 6 8.3580 -0.5571 -1.3593 11 1 9.3740 -0.1913 -1.3798 12 6 7.5584 -0.4802 -2.5160 13 7 6.3528 -0.9753 -2.5089 14 14 8.2258 0.3312 -4.0605 15 1 9.6096 0.8087 -3.8104 16 1 8.2357 -0.6533 -5.1721 17 1 7.3629 1.4830 -4.4269 18 6 8.7104 -1.6011 0.8026 19 6 10.1263 -1.4432 0.6580 20 7 11.2493 -1.3176 0.5481 21 6 8.1778 -2.2636 1.9550 22 7 7.7544 -2.7874 2.8737 23 6 6.3453 1.2567 -0.0010 24 7 5.6457 2.3745 0.0000 25 6 4.3266 2.3719 0.0000 26 9 3.6555 3.5445 0.0015 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.8102 -0.9864 -0.0028 32 1 6.0347 -2.0165 0.1300 33 1 5.8289 -0.9881 -3.3251 34 1 7.4242 1.3047 0.0035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169082678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:55 Heat of formation + Delta-G solvation = 22.905767 kcal Electronic energy + Delta-G solvation = -25083.615949 eV Core-core repulsion = 21124.459984 eV Total energy + Delta-G solvation = -3959.155965 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.43612 -40.38602 -39.16489 -37.43812 -35.44233 -34.85623 -34.72726 -33.89369 -32.53332 -31.18526 -28.35325 -27.40903 -27.05596 -24.38216 -22.87576 -21.81829 -20.67125 -19.33557 -18.18832 -17.74887 -17.44665 -16.96604 -16.45987 -15.85311 -15.80119 -15.59620 -15.06936 -14.96388 -14.31290 -13.99578 -13.44518 -13.17241 -12.97518 -12.95623 -12.82617 -12.71558 -12.68959 -12.43859 -12.38584 -11.95211 -11.83500 -11.71042 -11.68872 -11.19703 -11.05980 -10.89782 -10.41634 -10.31917 -10.25563 -9.58175 -9.40417 -9.21747 -8.41782 -7.92548 -7.00907 -5.65416 0.75580 1.41507 2.03439 2.62136 2.69658 2.74537 2.96865 3.05931 3.28922 3.58557 3.70071 3.90182 3.97599 4.00746 4.05688 4.21303 4.60963 4.78155 4.96975 5.00511 5.06111 5.34777 5.36006 5.43658 5.56832 5.64664 5.90219 6.02952 6.13802 6.21807 6.25136 6.68304 6.86094 7.04707 7.31893 7.41814 7.55720 7.83865 8.03972 8.13154 8.19715 8.79331 8.97105 9.00468 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.004929 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.577174 B = 5679.739419 C = 6598.987591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.732 5.732 3 C 0.566 3.434 4 O -0.525 6.525 5 C -0.174 4.174 6 C -0.097 4.097 7 C 0.203 3.797 8 N -0.646 5.646 9 C 0.373 3.627 10 C -0.378 4.378 11 H 0.115 0.885 12 C 0.070 3.930 13 N -0.724 5.724 14 Si 0.924 3.076 15 H -0.246 1.246 16 H -0.262 1.262 17 H -0.260 1.260 18 C -0.304 4.304 19 C 0.322 3.678 20 N -0.526 5.526 21 C 0.307 3.693 22 N -0.530 5.530 23 C 0.107 3.893 24 N -0.480 5.480 25 C 0.287 3.713 26 F -0.104 7.104 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.403 0.597 31 H 0.140 0.860 32 H 0.405 0.595 33 H 0.302 0.698 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.572 -0.288 -4.725 11.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.384 5.384 3 C 0.353 3.647 4 O -0.402 6.402 5 C -0.182 4.182 6 C -0.128 4.128 7 C 0.096 3.904 8 N -0.266 5.266 9 C 0.269 3.731 10 C -0.405 4.405 11 H 0.133 0.867 12 C -0.161 4.161 13 N -0.343 5.343 14 Si 0.745 3.255 15 H -0.168 1.168 16 H -0.186 1.186 17 H -0.185 1.185 18 C -0.323 4.323 19 C 0.014 3.986 20 N -0.208 5.208 21 C 0.000 4.000 22 N -0.212 5.212 23 C -0.057 4.057 24 N -0.193 5.193 25 C 0.132 3.868 26 F -0.083 7.083 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.238 0.762 31 H 0.158 0.842 32 H 0.242 0.758 33 H 0.114 0.886 34 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -9.698 0.729 -3.595 10.368 hybrid contribution -0.658 -1.098 -1.135 1.711 sum -10.356 -0.369 -4.730 11.391 Atomic orbital electron populations 1.21532 0.79242 1.02217 1.02421 1.45647 1.07784 1.08590 1.76409 1.17951 0.86557 0.83899 0.76288 1.90824 1.69617 1.30907 1.48840 1.20260 0.93732 0.93382 1.10784 1.20882 0.92163 0.96947 1.02789 1.18311 0.90239 0.88219 0.93635 1.41308 1.05110 1.05568 1.74619 1.16794 0.79816 0.87539 0.88991 1.20440 1.00352 1.27793 0.91947 0.86727 1.26497 0.93747 0.93088 1.02776 1.69485 1.07791 1.25306 1.31682 0.85879 0.81517 0.79847 0.78264 1.16815 1.18604 1.18458 1.12906 0.84199 1.35207 0.99954 1.24637 0.91238 0.90935 0.91800 1.81066 1.12137 1.16688 1.10866 1.25302 0.92566 0.90805 0.91363 1.81231 1.09288 1.18006 1.12714 1.22626 1.00742 0.84636 0.97666 1.67014 1.05999 1.32304 1.14003 1.17795 0.86695 0.80604 1.01747 1.91639 1.78087 1.45224 1.93303 0.92126 0.92147 0.90580 0.76242 0.84222 0.75804 0.88556 0.80505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.70 59.84 0.64 1.41 16 2 N -0.73 -7.78 5.67 -68.10 -0.39 -8.17 16 3 C 0.57 8.48 7.78 -12.40 -0.10 8.39 16 4 O -0.53 -9.66 15.36 5.30 0.08 -9.58 16 5 C -0.17 -2.69 5.89 -104.79 -0.62 -3.31 16 6 C -0.10 -1.32 9.52 -38.67 -0.37 -1.69 16 7 C 0.20 3.13 4.87 -83.61 -0.41 2.73 16 8 N -0.65 -10.03 3.36 -8.10 -0.03 -10.05 16 9 C 0.37 6.52 4.97 -83.56 -0.42 6.11 16 10 C -0.38 -6.62 7.02 -38.32 -0.27 -6.89 16 11 H 0.11 2.08 7.01 -52.48 -0.37 1.71 16 12 C 0.07 1.15 4.99 -17.21 -0.09 1.06 16 13 N -0.72 -11.57 10.63 55.59 0.59 -10.97 16 14 Si 0.92 13.65 29.57 -169.99 -5.03 8.62 16 15 H -0.25 -3.76 7.11 56.52 0.40 -3.36 16 16 H -0.26 -3.85 7.11 56.52 0.40 -3.45 16 17 H -0.26 -4.01 7.11 56.52 0.40 -3.61 16 18 C -0.30 -5.83 5.88 -104.94 -0.62 -6.45 16 19 C 0.32 6.68 13.91 -22.50 -0.31 6.37 16 20 N -0.53 -11.57 18.53 41.81 0.77 -10.80 16 21 C 0.31 6.17 14.81 -22.37 -0.33 5.83 16 22 N -0.53 -11.28 18.56 41.96 0.78 -10.50 16 23 C 0.11 1.80 9.82 -17.25 -0.17 1.63 16 24 N -0.48 -8.66 10.35 -13.07 -0.14 -8.80 16 25 C 0.29 5.14 8.41 -16.90 -0.14 5.00 16 26 F -0.10 -1.98 15.58 2.25 0.04 -1.94 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16 30 H 0.40 3.26 6.93 -40.82 -0.28 2.97 16 31 H 0.14 1.41 6.52 -52.49 -0.34 1.07 16 32 H 0.40 5.80 8.82 -40.82 -0.36 5.44 16 33 H 0.30 4.47 8.29 -40.82 -0.34 4.13 16 34 H 0.18 2.96 6.33 -52.49 -0.33 2.62 16 LS Contribution 325.81 15.07 4.91 4.91 Total: -1.00 -25.63 325.81 -3.68 -29.31 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -2.09 Total: 7.78 kcal Atomic # 6 Polarization: 23.37 SS G_CDS: -3.19 Total: 20.18 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 1.60 Total: -59.29 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 13.65 SS G_CDS: -5.03 Total: 8.62 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -25.63 -3.68 -29.31 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.217 kcal (2) G-P(sol) polarization free energy of solvation -25.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds