Wall clock time and date at job start Tue Mar 31 2020 11:19:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.34773 * 120.00205 * 2 1
4 4 O 1.21577 * 119.99553 * 0.02562 * 3 2 1
5 5 C 1.47694 * 120.00340 * 180.02562 * 3 2 1
6 6 C 1.39934 * 120.53763 * 0.02562 * 5 3 2
7 7 C 1.38984 * 118.24894 * 180.02562 * 6 5 3
8 8 N 1.39922 * 120.38621 * 179.97438 * 7 6 5
9 9 C 1.38277 * 119.99969 * 170.92351 * 8 7 6
10 10 C 1.39009 * 119.99758 * 300.38320 * 9 8 7
11 11 H 1.08004 * 120.00023 * 158.44551 * 10 9 8
12 12 C 1.40826 * 120.00269 * 338.44615 * 10 9 8
13 13 N 1.30337 * 120.00040 * 356.94856 * 12 10 9
14 14 Si 1.86798 * 120.00123 * 176.95001 * 12 10 9
15 15 H 1.48504 * 109.46974 * 0.02562 * 14 12 10
16 16 H 1.48498 * 109.47221 * 119.99710 * 14 12 10
17 17 H 1.48501 * 109.47330 * 240.00124 * 14 12 10
18 18 C 1.41168 * 119.99910 * 120.38344 * 9 8 7
19 19 C 1.43196 * 119.99847 * 185.16077 * 18 9 8
20 20 N 9.88789 * 171.70178 * 157.41595 * 2 1 3
21 21 C 1.43198 * 120.00008 * 5.16448 * 18 9 8
22 22 N 7.45550 * 147.52176 * 134.12694 * 2 1 3
23 23 C 1.39000 * 119.22852 * 359.97438 * 7 6 5
24 24 N 1.31869 * 121.02129 * 0.02562 * 23 7 6
25 25 C 1.31911 * 121.92822 * 359.97438 * 24 23 7
26 26 F 1.35108 * 119.67095 * 179.97438 * 25 24 23
27 27 H 1.08997 * 109.47305 * 299.99503 * 1 2 3
28 28 H 1.08997 * 109.47583 * 60.00019 * 1 2 3
29 29 H 1.09007 * 109.47100 * 179.97438 * 1 2 3
30 30 H 0.97001 * 119.99901 * 179.97438 * 2 1 3
31 31 H 1.07996 * 120.87940 * 0.04202 * 6 5 3
32 32 H 0.96998 * 120.00531 * 350.92064 * 8 7 6
33 33 H 0.96994 * 120.00039 * 185.01930 * 13 12 10
34 34 H 1.08002 * 119.48683 * 179.72558 * 23 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1389 1.1671 0.0000
4 8 1.5309 2.2200 0.0005
5 6 3.6158 1.1672 -0.0006
6 6 4.3268 -0.0381 -0.0017
7 6 5.7156 0.0175 -0.0016
8 7 6.4710 -1.1603 -0.0021
9 6 7.8396 -1.1037 -0.1910
10 6 8.3580 -0.5571 -1.3593
11 1 9.3740 -0.1913 -1.3798
12 6 7.5584 -0.4802 -2.5160
13 7 6.3528 -0.9753 -2.5089
14 14 8.2258 0.3312 -4.0605
15 1 9.6096 0.8087 -3.8104
16 1 8.2357 -0.6533 -5.1721
17 1 7.3629 1.4830 -4.4269
18 6 8.7104 -1.6011 0.8026
19 6 10.1263 -1.4432 0.6580
20 7 11.2493 -1.3176 0.5481
21 6 8.1778 -2.2636 1.9550
22 7 7.7544 -2.7874 2.8737
23 6 6.3453 1.2567 -0.0010
24 7 5.6457 2.3745 0.0000
25 6 4.3266 2.3719 0.0000
26 9 3.6555 3.5445 0.0015
27 1 -0.3634 0.5137 0.8900
28 1 -0.3634 0.5138 -0.8899
29 1 -0.3634 -1.0277 -0.0005
30 1 1.9500 -0.8401 0.0004
31 1 3.8102 -0.9864 -0.0028
32 1 6.0347 -2.0165 0.1300
33 1 5.8289 -0.9881 -3.3251
34 1 7.4242 1.3047 0.0035
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001169082678.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:19:55
Heat of formation + Delta-G solvation = 22.905767 kcal
Electronic energy + Delta-G solvation = -25083.615949 eV
Core-core repulsion = 21124.459984 eV
Total energy + Delta-G solvation = -3959.155965 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 315.087 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-48.43612 -40.38602 -39.16489 -37.43812 -35.44233 -34.85623 -34.72726 -33.89369
-32.53332 -31.18526 -28.35325 -27.40903 -27.05596 -24.38216 -22.87576 -21.81829
-20.67125 -19.33557 -18.18832 -17.74887 -17.44665 -16.96604 -16.45987 -15.85311
-15.80119 -15.59620 -15.06936 -14.96388 -14.31290 -13.99578 -13.44518 -13.17241
-12.97518 -12.95623 -12.82617 -12.71558 -12.68959 -12.43859 -12.38584 -11.95211
-11.83500 -11.71042 -11.68872 -11.19703 -11.05980 -10.89782 -10.41634 -10.31917
-10.25563 -9.58175 -9.40417 -9.21747 -8.41782 -7.92548 -7.00907 -5.65416
0.75580 1.41507 2.03439 2.62136 2.69658 2.74537 2.96865 3.05931
3.28922 3.58557 3.70071 3.90182 3.97599 4.00746 4.05688 4.21303
4.60963 4.78155 4.96975 5.00511 5.06111 5.34777 5.36006 5.43658
5.56832 5.64664 5.90219 6.02952 6.13802 6.21807 6.25136 6.68304
6.86094 7.04707 7.31893 7.41814 7.55720 7.83865 8.03972 8.13154
8.19715 8.79331 8.97105 9.00468
Molecular weight = 315.09amu
Principal moments of inertia in cm(-1)
A = 0.012400 B = 0.004929 C = 0.004242
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2257.577174 B = 5679.739419 C = 6598.987591
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.090 3.910
2 N -0.732 5.732
3 C 0.566 3.434
4 O -0.525 6.525
5 C -0.174 4.174
6 C -0.097 4.097
7 C 0.203 3.797
8 N -0.646 5.646
9 C 0.373 3.627
10 C -0.378 4.378
11 H 0.115 0.885
12 C 0.070 3.930
13 N -0.724 5.724
14 Si 0.924 3.076
15 H -0.246 1.246
16 H -0.262 1.262
17 H -0.260 1.260
18 C -0.304 4.304
19 C 0.322 3.678
20 N -0.526 5.526
21 C 0.307 3.693
22 N -0.530 5.530
23 C 0.107 3.893
24 N -0.480 5.480
25 C 0.287 3.713
26 F -0.104 7.104
27 H 0.060 0.940
28 H 0.060 0.940
29 H 0.075 0.925
30 H 0.403 0.597
31 H 0.140 0.860
32 H 0.405 0.595
33 H 0.302 0.698
34 H 0.178 0.822
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.572 -0.288 -4.725 11.583
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.054 4.054
2 N -0.384 5.384
3 C 0.353 3.647
4 O -0.402 6.402
5 C -0.182 4.182
6 C -0.128 4.128
7 C 0.096 3.904
8 N -0.266 5.266
9 C 0.269 3.731
10 C -0.405 4.405
11 H 0.133 0.867
12 C -0.161 4.161
13 N -0.343 5.343
14 Si 0.745 3.255
15 H -0.168 1.168
16 H -0.186 1.186
17 H -0.185 1.185
18 C -0.323 4.323
19 C 0.014 3.986
20 N -0.208 5.208
21 C 0.000 4.000
22 N -0.212 5.212
23 C -0.057 4.057
24 N -0.193 5.193
25 C 0.132 3.868
26 F -0.083 7.083
27 H 0.079 0.921
28 H 0.079 0.921
29 H 0.094 0.906
30 H 0.238 0.762
31 H 0.158 0.842
32 H 0.242 0.758
33 H 0.114 0.886
34 H 0.195 0.805
Dipole moment (debyes) X Y Z Total
from point charges -9.698 0.729 -3.595 10.368
hybrid contribution -0.658 -1.098 -1.135 1.711
sum -10.356 -0.369 -4.730 11.391
Atomic orbital electron populations
1.21532 0.79242 1.02217 1.02421 1.45647 1.07784 1.08590 1.76409
1.17951 0.86557 0.83899 0.76288 1.90824 1.69617 1.30907 1.48840
1.20260 0.93732 0.93382 1.10784 1.20882 0.92163 0.96947 1.02789
1.18311 0.90239 0.88219 0.93635 1.41308 1.05110 1.05568 1.74619
1.16794 0.79816 0.87539 0.88991 1.20440 1.00352 1.27793 0.91947
0.86727 1.26497 0.93747 0.93088 1.02776 1.69485 1.07791 1.25306
1.31682 0.85879 0.81517 0.79847 0.78264 1.16815 1.18604 1.18458
1.12906 0.84199 1.35207 0.99954 1.24637 0.91238 0.90935 0.91800
1.81066 1.12137 1.16688 1.10866 1.25302 0.92566 0.90805 0.91363
1.81231 1.09288 1.18006 1.12714 1.22626 1.00742 0.84636 0.97666
1.67014 1.05999 1.32304 1.14003 1.17795 0.86695 0.80604 1.01747
1.91639 1.78087 1.45224 1.93303 0.92126 0.92147 0.90580 0.76242
0.84222 0.75804 0.88556 0.80505
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.09 0.77 10.70 59.84 0.64 1.41 16
2 N -0.73 -7.78 5.67 -68.10 -0.39 -8.17 16
3 C 0.57 8.48 7.78 -12.40 -0.10 8.39 16
4 O -0.53 -9.66 15.36 5.30 0.08 -9.58 16
5 C -0.17 -2.69 5.89 -104.79 -0.62 -3.31 16
6 C -0.10 -1.32 9.52 -38.67 -0.37 -1.69 16
7 C 0.20 3.13 4.87 -83.61 -0.41 2.73 16
8 N -0.65 -10.03 3.36 -8.10 -0.03 -10.05 16
9 C 0.37 6.52 4.97 -83.56 -0.42 6.11 16
10 C -0.38 -6.62 7.02 -38.32 -0.27 -6.89 16
11 H 0.11 2.08 7.01 -52.48 -0.37 1.71 16
12 C 0.07 1.15 4.99 -17.21 -0.09 1.06 16
13 N -0.72 -11.57 10.63 55.59 0.59 -10.97 16
14 Si 0.92 13.65 29.57 -169.99 -5.03 8.62 16
15 H -0.25 -3.76 7.11 56.52 0.40 -3.36 16
16 H -0.26 -3.85 7.11 56.52 0.40 -3.45 16
17 H -0.26 -4.01 7.11 56.52 0.40 -3.61 16
18 C -0.30 -5.83 5.88 -104.94 -0.62 -6.45 16
19 C 0.32 6.68 13.91 -22.50 -0.31 6.37 16
20 N -0.53 -11.57 18.53 41.81 0.77 -10.80 16
21 C 0.31 6.17 14.81 -22.37 -0.33 5.83 16
22 N -0.53 -11.28 18.56 41.96 0.78 -10.50 16
23 C 0.11 1.80 9.82 -17.25 -0.17 1.63 16
24 N -0.48 -8.66 10.35 -13.07 -0.14 -8.80 16
25 C 0.29 5.14 8.41 -16.90 -0.14 5.00 16
26 F -0.10 -1.98 15.58 2.25 0.04 -1.94 16
27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
29 H 0.08 0.40 8.14 -51.92 -0.42 -0.02 16
30 H 0.40 3.26 6.93 -40.82 -0.28 2.97 16
31 H 0.14 1.41 6.52 -52.49 -0.34 1.07 16
32 H 0.40 5.80 8.82 -40.82 -0.36 5.44 16
33 H 0.30 4.47 8.29 -40.82 -0.34 4.13 16
34 H 0.18 2.96 6.33 -52.49 -0.33 2.62 16
LS Contribution 325.81 15.07 4.91 4.91
Total: -1.00 -25.63 325.81 -3.68 -29.31
By element:
Atomic # 1 Polarization: 9.87 SS G_CDS: -2.09 Total: 7.78 kcal
Atomic # 6 Polarization: 23.37 SS G_CDS: -3.19 Total: 20.18 kcal
Atomic # 7 Polarization: -60.89 SS G_CDS: 1.60 Total: -59.29 kcal
Atomic # 8 Polarization: -9.66 SS G_CDS: 0.08 Total: -9.58 kcal
Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal
Atomic # 14 Polarization: 13.65 SS G_CDS: -5.03 Total: 8.62 kcal
Total LS contribution 4.91 Total: 4.91 kcal
Total: -25.63 -3.68 -29.31 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001169082678.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 52.217 kcal
(2) G-P(sol) polarization free energy of solvation -25.628 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.588 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.683 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.311 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.906 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds