Wall clock time and date at job start Tue Mar 31 2020 11:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34773 * 120.00205 * 2 1 4 4 O 1.21577 * 119.99553 * 0.02562 * 3 2 1 5 5 C 1.47694 * 120.00340 * 180.02562 * 3 2 1 6 6 C 1.39934 * 120.53763 * 0.02562 * 5 3 2 7 7 C 1.38984 * 118.24894 * 180.02562 * 6 5 3 8 8 N 1.39922 * 120.38621 * 179.97438 * 7 6 5 9 9 C 1.38277 * 119.99969 * 170.92351 * 8 7 6 10 10 C 1.39009 * 119.99758 * 300.38320 * 9 8 7 11 11 H 1.08004 * 120.00023 * 158.44551 * 10 9 8 12 12 C 1.40826 * 120.00269 * 338.44615 * 10 9 8 13 13 N 1.30337 * 120.00040 * 356.94856 * 12 10 9 14 14 Si 1.86798 * 120.00123 * 176.95001 * 12 10 9 15 15 H 1.48504 * 109.46974 * 0.02562 * 14 12 10 16 16 H 1.48498 * 109.47221 * 119.99710 * 14 12 10 17 17 H 1.48501 * 109.47330 * 240.00124 * 14 12 10 18 18 C 1.41168 * 119.99910 * 120.38344 * 9 8 7 19 19 C 1.43196 * 119.99847 * 185.16077 * 18 9 8 20 20 N 9.88789 * 171.70178 * 157.41595 * 2 1 3 21 21 C 1.43198 * 120.00008 * 5.16448 * 18 9 8 22 22 N 7.45550 * 147.52176 * 134.12694 * 2 1 3 23 23 C 1.39000 * 119.22852 * 359.97438 * 7 6 5 24 24 N 1.31869 * 121.02129 * 0.02562 * 23 7 6 25 25 C 1.31911 * 121.92822 * 359.97438 * 24 23 7 26 26 F 1.35108 * 119.67095 * 179.97438 * 25 24 23 27 27 H 1.08997 * 109.47305 * 299.99503 * 1 2 3 28 28 H 1.08997 * 109.47583 * 60.00019 * 1 2 3 29 29 H 1.09007 * 109.47100 * 179.97438 * 1 2 3 30 30 H 0.97001 * 119.99901 * 179.97438 * 2 1 3 31 31 H 1.07996 * 120.87940 * 0.04202 * 6 5 3 32 32 H 0.96998 * 120.00531 * 350.92064 * 8 7 6 33 33 H 0.96994 * 120.00039 * 185.01930 * 13 12 10 34 34 H 1.08002 * 119.48683 * 179.72558 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5309 2.2200 0.0005 5 6 3.6158 1.1672 -0.0006 6 6 4.3268 -0.0381 -0.0017 7 6 5.7156 0.0175 -0.0016 8 7 6.4710 -1.1603 -0.0021 9 6 7.8396 -1.1037 -0.1910 10 6 8.3580 -0.5571 -1.3593 11 1 9.3740 -0.1913 -1.3798 12 6 7.5584 -0.4802 -2.5160 13 7 6.3528 -0.9753 -2.5089 14 14 8.2258 0.3312 -4.0605 15 1 9.6096 0.8087 -3.8104 16 1 8.2357 -0.6533 -5.1721 17 1 7.3629 1.4830 -4.4269 18 6 8.7104 -1.6011 0.8026 19 6 10.1263 -1.4432 0.6580 20 7 11.2493 -1.3176 0.5481 21 6 8.1778 -2.2636 1.9550 22 7 7.7544 -2.7874 2.8737 23 6 6.3453 1.2567 -0.0010 24 7 5.6457 2.3745 0.0000 25 6 4.3266 2.3719 0.0000 26 9 3.6555 3.5445 0.0015 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.9500 -0.8401 0.0004 31 1 3.8102 -0.9864 -0.0028 32 1 6.0347 -2.0165 0.1300 33 1 5.8289 -0.9881 -3.3251 34 1 7.4242 1.3047 0.0035 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169082678.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:54 Heat of formation + Delta-G solvation = 6.760029 kcal Electronic energy + Delta-G solvation = -25084.316081 eV Core-core repulsion = 21124.459984 eV Total energy + Delta-G solvation = -3959.856097 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.82791 -41.62917 -40.35600 -38.81726 -36.99778 -36.47475 -35.78001 -35.21747 -33.77872 -32.55311 -29.67345 -28.83120 -27.98133 -25.57005 -24.15781 -23.13895 -21.83901 -20.74222 -19.39187 -19.12568 -18.81597 -18.25754 -17.79116 -17.13601 -17.07500 -16.76169 -16.33012 -16.06112 -15.45790 -15.29281 -14.66153 -14.54416 -14.43063 -14.26641 -14.24015 -13.95476 -13.86577 -13.83851 -13.39438 -13.34645 -13.26674 -13.07632 -13.03743 -12.70428 -12.63865 -12.15296 -11.78041 -11.59527 -11.50996 -10.84146 -10.67447 -10.16218 -9.81609 -9.24501 -8.32390 -7.13155 -0.48459 0.12868 0.69260 1.39916 1.49802 1.54524 1.78017 2.03561 2.07198 2.09876 2.27149 2.28862 2.59069 2.65417 2.74098 2.78629 3.43825 3.50351 3.62632 3.77023 3.88691 4.17921 4.29250 4.52537 4.62348 4.66068 4.71169 4.75249 4.92474 4.97982 5.33338 5.34385 5.44237 5.68294 6.01391 6.17906 6.39449 6.55528 6.70808 6.91456 7.09966 7.22804 7.38607 7.68968 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.012400 B = 0.004929 C = 0.004242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2257.577174 B = 5679.739419 C = 6598.987591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.711 5.711 3 C 0.563 3.437 4 O -0.567 6.567 5 C -0.169 4.169 6 C -0.075 4.075 7 C 0.202 3.798 8 N -0.638 5.638 9 C 0.374 3.626 10 C -0.372 4.372 11 H 0.106 0.894 12 C 0.053 3.947 13 N -0.715 5.715 14 Si 0.966 3.034 15 H -0.257 1.257 16 H -0.254 1.254 17 H -0.268 1.268 18 C -0.316 4.316 19 C 0.328 3.672 20 N -0.557 5.557 21 C 0.317 3.683 22 N -0.555 5.555 23 C 0.091 3.909 24 N -0.498 5.498 25 C 0.261 3.739 26 F -0.118 7.118 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.117 0.883 30 H 0.418 0.582 31 H 0.182 0.818 32 H 0.414 0.586 33 H 0.313 0.687 34 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.221 -1.877 -5.800 13.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.363 5.363 3 C 0.349 3.651 4 O -0.447 6.447 5 C -0.176 4.176 6 C -0.105 4.105 7 C 0.095 3.905 8 N -0.259 5.259 9 C 0.269 3.731 10 C -0.399 4.399 11 H 0.124 0.876 12 C -0.179 4.179 13 N -0.333 5.333 14 Si 0.787 3.213 15 H -0.180 1.180 16 H -0.178 1.178 17 H -0.192 1.192 18 C -0.335 4.335 19 C 0.021 3.979 20 N -0.241 5.241 21 C 0.011 3.989 22 N -0.238 5.238 23 C -0.071 4.071 24 N -0.211 5.211 25 C 0.105 3.895 26 F -0.097 7.097 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.135 0.865 30 H 0.256 0.744 31 H 0.199 0.801 32 H 0.252 0.748 33 H 0.126 0.874 34 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -11.369 -0.930 -4.665 12.324 hybrid contribution -0.247 -0.598 -0.898 1.106 sum -11.616 -1.528 -5.563 12.970 Atomic orbital electron populations 1.21768 0.77584 1.04744 1.01820 1.45576 1.08833 1.07827 1.74075 1.17949 0.86262 0.84556 0.76345 1.90810 1.70127 1.32620 1.51096 1.20373 0.94370 0.93021 1.09860 1.21227 0.91309 0.97895 1.00029 1.18339 0.90973 0.87591 0.93622 1.41173 1.04340 1.05948 1.74467 1.16661 0.80540 0.87379 0.88494 1.20531 1.00216 1.26776 0.92401 0.87604 1.26769 0.94068 0.93558 1.03505 1.69423 1.07527 1.23652 1.32678 0.85245 0.80259 0.79040 0.76748 1.18018 1.17778 1.19238 1.12912 0.83662 1.36459 1.00458 1.24891 0.91516 0.90337 0.91135 1.81057 1.12941 1.18180 1.11876 1.25357 0.92074 0.90360 0.91147 1.81232 1.10024 1.19200 1.13345 1.22597 1.00633 0.85105 0.98800 1.66913 1.06437 1.33160 1.14630 1.18097 0.86949 0.81056 1.03403 1.91595 1.78333 1.46196 1.93623 0.92792 0.92763 0.86466 0.74433 0.80071 0.74759 0.87386 0.81005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.17 10.70 127.77 1.37 2.54 16 2 N -0.71 -12.76 5.67 -487.62 -2.76 -15.52 16 3 C 0.56 15.85 7.78 86.74 0.67 16.52 16 4 O -0.57 -20.58 15.36 -3.96 -0.06 -20.64 16 5 C -0.17 -4.93 5.89 -19.97 -0.12 -5.05 16 6 C -0.07 -1.79 9.52 22.86 0.22 -1.58 16 7 C 0.20 5.80 4.87 38.21 0.19 5.99 16 8 N -0.64 -18.36 3.36 -179.54 -0.60 -18.96 16 9 C 0.37 12.58 4.97 39.03 0.19 12.77 16 10 C -0.37 -12.58 7.02 23.09 0.16 -12.42 16 11 H 0.11 3.79 7.01 -2.91 -0.02 3.77 16 12 C 0.05 1.62 4.99 85.55 0.43 2.05 16 13 N -0.71 -20.69 10.63 21.98 0.23 -20.45 16 14 Si 0.97 26.44 29.57 68.60 2.03 28.47 16 15 H -0.26 -7.50 7.11 99.48 0.71 -6.80 16 16 H -0.25 -6.65 7.11 99.48 0.71 -5.95 16 17 H -0.27 -7.67 7.11 99.48 0.71 -6.96 16 18 C -0.32 -11.87 5.88 -20.07 -0.12 -11.99 16 19 C 0.33 13.56 13.91 88.34 1.23 14.79 16 20 N -0.56 -24.63 18.53 19.00 0.35 -24.28 16 21 C 0.32 12.44 14.81 88.30 1.31 13.75 16 22 N -0.55 -23.08 18.56 19.04 0.35 -22.72 16 23 C 0.09 3.02 9.82 84.87 0.83 3.85 16 24 N -0.50 -17.98 10.35 -195.26 -2.02 -20.00 16 25 C 0.26 9.29 8.41 85.08 0.72 10.01 16 26 F -0.12 -4.61 15.58 44.97 0.70 -3.91 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.12 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.42 4.81 6.93 -92.71 -0.64 4.17 16 31 H 0.18 2.74 6.52 -2.91 -0.02 2.72 16 32 H 0.41 10.57 8.82 -92.71 -0.82 9.76 16 33 H 0.31 8.17 8.29 -92.71 -0.77 7.40 16 34 H 0.17 5.74 6.33 -2.91 -0.02 5.73 16 Total: -1.00 -55.66 325.81 5.07 -50.59 By element: Atomic # 1 Polarization: 16.42 SS G_CDS: -0.22 Total: 16.20 kcal Atomic # 6 Polarization: 44.16 SS G_CDS: 7.08 Total: 51.24 kcal Atomic # 7 Polarization: -117.49 SS G_CDS: -4.45 Total: -121.94 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.06 Total: -20.64 kcal Atomic # 9 Polarization: -4.61 SS G_CDS: 0.70 Total: -3.91 kcal Atomic # 14 Polarization: 26.44 SS G_CDS: 2.03 Total: 28.47 kcal Total: -55.66 5.07 -50.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169082678.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.348 kcal (2) G-P(sol) polarization free energy of solvation -55.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds