Wall clock time and date at job start Tue Mar 31 2020 11:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35929 * 117.00044 * 2 1 4 4 C 1.39434 * 119.82513 * 359.97438 * 3 2 1 5 5 C 1.38066 * 120.57517 * 180.02562 * 4 3 2 6 6 C 1.38726 * 120.20810 * 0.02562 * 5 4 3 7 7 N 1.38907 * 120.18128 * 179.97438 * 6 5 4 8 8 C 1.36354 * 120.00176 * 359.97438 * 7 6 5 9 9 C 1.35576 * 119.99935 * 180.02562 * 8 7 6 10 10 C 1.40251 * 120.00225 * 179.97438 * 9 8 7 11 11 O 1.21543 * 119.99698 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00657 * 179.72549 * 10 9 8 13 13 F 1.39892 * 109.47369 * 180.27162 * 12 10 9 14 14 F 1.39897 * 109.46877 * 300.27851 * 12 10 9 15 15 F 1.39907 * 109.46696 * 60.27314 * 12 10 9 16 16 C 1.41543 * 119.63688 * 0.25139 * 6 5 4 17 17 C 1.41005 * 120.27722 * 179.70840 * 16 6 5 18 18 H 1.07998 * 120.00278 * 25.45623 * 17 16 6 19 19 C 1.39949 * 119.99819 * 205.45890 * 17 16 6 20 20 N 1.30862 * 120.00044 * 15.15143 * 19 17 16 21 21 Si 1.86795 * 119.99747 * 195.15588 * 19 17 16 22 22 H 1.48504 * 109.47088 * 94.96471 * 21 19 17 23 23 H 1.48506 * 109.46994 * 214.96526 * 21 19 17 24 24 H 1.48498 * 109.47340 * 334.96676 * 21 19 17 25 25 C 1.37864 * 119.82537 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47716 * 299.99894 * 1 2 3 28 28 H 1.09005 * 109.47092 * 60.00637 * 1 2 3 29 29 H 1.07999 * 119.70629 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.89579 * 179.97438 * 5 4 3 31 31 H 0.97000 * 119.99452 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.99956 * 0.02562 * 8 7 6 33 33 H 1.08002 * 120.00153 * 0.02562 * 9 8 7 34 34 H 0.96990 * 119.99956 * 180.02562 * 20 19 17 35 35 H 1.07997 * 120.10496 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2831 2.3782 -0.0005 5 6 1.8937 3.6165 -0.0011 6 6 3.2777 3.7122 -0.0016 7 7 3.8915 4.9583 -0.0027 8 6 3.1335 6.0917 -0.0038 9 6 3.7326 7.3079 -0.0053 10 6 2.9530 8.4738 -0.0070 11 8 1.7402 8.3938 -0.0074 12 6 3.6188 9.8257 -0.0025 13 9 2.6417 10.8268 0.0011 14 9 4.4168 9.9486 1.1400 15 9 4.4162 9.9565 -1.1446 16 6 4.0609 2.5332 -0.0070 17 6 5.4685 2.6148 -0.0138 18 1 5.9608 3.4886 0.3869 19 6 6.2278 1.5635 -0.5400 20 7 5.6558 0.6520 -1.2845 21 14 8.0578 1.4615 -0.1793 22 1 8.2834 0.5713 0.9877 23 1 8.7660 0.9137 -1.3641 24 1 8.5788 2.8184 0.1252 25 6 3.4230 1.2791 -0.0005 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 0.2051 2.3129 -0.0005 30 1 1.2921 4.5134 -0.0019 31 1 4.8594 5.0221 -0.0035 32 1 2.0558 6.0206 -0.0033 33 1 4.8103 7.3790 -0.0062 34 1 6.1820 -0.0768 -1.6488 35 1 4.0101 0.3726 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169476331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:09 Heat of formation + Delta-G solvation = -187.645260 kcal Electronic energy + Delta-G solvation = -25165.744066 eV Core-core repulsion = 20714.475986 eV Total energy + Delta-G solvation = -4451.268080 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.98918 -47.50645 -47.49608 -39.57583 -39.00084 -37.87294 -35.51416 -33.82885 -31.32869 -30.20772 -28.75922 -27.49068 -26.13868 -25.51715 -23.32956 -21.49509 -20.64930 -19.74110 -18.41958 -18.37657 -18.16313 -17.84096 -16.75552 -16.34668 -15.94019 -15.14263 -15.01908 -14.83913 -14.74428 -14.55787 -14.17151 -13.92512 -13.87469 -13.67540 -13.64297 -13.62236 -13.30374 -13.06876 -12.87675 -12.64404 -12.02648 -11.89344 -11.68604 -11.51227 -11.40783 -11.35159 -10.86967 -10.43449 -10.18509 -9.86930 -9.73660 -9.51464 -8.33597 -7.91801 -7.18485 -6.64913 -4.77720 1.02814 2.41005 2.52158 2.71507 2.87867 2.90624 2.93253 3.19321 3.59580 3.63878 3.88541 4.08882 4.24964 4.27095 4.52570 5.06095 5.18327 5.47956 5.56830 5.69033 5.74999 5.77228 5.87188 6.02625 6.17720 6.35522 6.49929 6.70439 6.92101 7.01651 7.09653 7.39164 7.53625 7.55007 7.69827 7.89589 7.98104 8.34083 8.38847 8.49948 9.78243 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.003686 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.440147 B = 7595.094876 C = 9709.152171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.326 6.326 3 C 0.128 3.872 4 C -0.288 4.288 5 C -0.084 4.084 6 C -0.032 4.032 7 N -0.571 5.571 8 C 0.269 3.731 9 C -0.438 4.438 10 C 0.371 3.629 11 O -0.472 6.472 12 C 0.421 3.579 13 F -0.176 7.176 14 F -0.176 7.176 15 F -0.176 7.176 16 C 0.134 3.866 17 C -0.459 4.459 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.771 5.771 21 Si 0.915 3.085 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.259 1.259 25 C -0.176 4.176 26 H 0.085 0.915 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.415 0.585 32 H 0.158 0.842 33 H 0.126 0.874 34 H 0.288 0.712 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.837 4.532 1.565 5.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.240 6.240 3 C 0.084 3.916 4 C -0.309 4.309 5 C -0.104 4.104 6 C -0.126 4.126 7 N -0.176 5.176 8 C 0.124 3.876 9 C -0.468 4.468 10 C 0.255 3.745 11 O -0.354 6.354 12 C 0.365 3.635 13 F -0.157 7.157 14 F -0.158 7.158 15 F -0.157 7.157 16 C 0.130 3.870 17 C -0.487 4.487 18 H 0.100 0.900 19 C -0.144 4.144 20 N -0.394 5.394 21 Si 0.739 3.261 22 H -0.190 1.190 23 H -0.199 1.199 24 H -0.183 1.183 25 C -0.197 4.197 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.253 0.747 32 H 0.175 0.825 33 H 0.144 0.856 34 H 0.100 0.900 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -2.366 3.895 1.407 4.769 hybrid contribution 1.214 0.506 0.009 1.315 sum -1.151 4.400 1.416 4.764 Atomic orbital electron populations 1.22815 0.80371 1.02251 1.00686 1.86031 1.19795 1.28584 1.89618 1.18973 0.92445 0.82771 0.97443 1.20328 0.97918 0.91763 1.20845 1.20092 0.91821 0.96738 1.01702 1.17798 0.91634 0.83785 1.19427 1.41942 1.10162 1.03371 1.62080 1.21978 0.98083 0.85425 0.82100 1.20364 1.00592 0.91225 1.34593 1.20143 0.89692 0.87369 0.77295 1.90673 1.14959 1.86936 1.42783 1.21503 0.77652 0.90249 0.74071 1.93179 1.62447 1.64035 1.96088 1.93187 1.74948 1.96656 1.50967 1.93192 1.74976 1.96602 1.50976 1.16944 0.92725 0.88357 0.89015 1.19355 0.90679 1.03571 1.35062 0.89996 1.25939 1.01936 0.94235 0.92323 1.69799 1.39027 1.09979 1.20623 0.86164 0.80685 0.80090 0.79209 1.18953 1.19880 1.18291 1.20469 0.89505 0.98725 1.10972 0.89632 0.93503 0.93448 0.87625 0.87714 0.74651 0.82513 0.85577 0.90045 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.80 101.05 0.99 1.48 16 2 O -0.33 -6.40 10.49 -19.52 -0.20 -6.61 16 3 C 0.13 2.74 6.67 -39.27 -0.26 2.48 16 4 C -0.29 -5.61 9.03 -39.20 -0.35 -5.96 16 5 C -0.08 -1.60 9.28 -39.46 -0.37 -1.96 16 6 C -0.03 -0.64 6.65 -83.22 -0.55 -1.19 16 7 N -0.57 -9.79 5.35 -10.05 -0.05 -9.84 16 8 C 0.27 4.23 9.56 -16.49 -0.16 4.08 16 9 C -0.44 -6.65 9.36 -39.78 -0.37 -7.02 16 10 C 0.37 5.96 6.45 -33.55 -0.22 5.74 16 11 O -0.47 -8.61 16.35 5.33 0.09 -8.52 16 12 C 0.42 6.27 3.33 36.00 0.12 6.39 16 13 F -0.18 -2.73 16.92 2.25 0.04 -2.69 16 14 F -0.18 -2.53 17.24 2.25 0.04 -2.49 16 15 F -0.18 -2.55 17.25 2.25 0.04 -2.51 16 16 C 0.13 3.01 5.58 -106.66 -0.60 2.42 16 17 C -0.46 -10.07 8.51 -37.89 -0.32 -10.40 16 18 H 0.08 1.65 6.67 -52.49 -0.35 1.30 16 19 C 0.08 1.66 5.19 -17.32 -0.09 1.57 16 20 N -0.77 -17.55 10.87 55.55 0.60 -16.94 16 21 Si 0.91 16.24 29.59 -169.99 -5.03 11.21 16 22 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 23 H -0.27 -4.85 7.11 56.52 0.40 -4.45 16 24 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 25 C -0.18 -4.10 8.60 -38.79 -0.33 -4.43 16 26 H 0.09 0.96 8.14 -51.92 -0.42 0.54 16 27 H 0.05 0.61 7.65 -51.93 -0.40 0.21 16 28 H 0.05 0.63 7.65 -51.93 -0.40 0.24 16 29 H 0.11 1.79 6.26 -52.49 -0.33 1.46 16 30 H 0.10 1.74 5.94 -52.48 -0.31 1.43 16 31 H 0.42 6.74 6.86 -40.82 -0.28 6.46 16 32 H 0.16 2.42 5.27 -52.49 -0.28 2.15 16 33 H 0.13 1.74 8.05 -52.49 -0.42 1.32 16 34 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 35 H 0.14 3.33 6.14 -52.49 -0.32 3.01 16 LS Contribution 320.31 15.07 4.83 4.83 Total: -1.00 -24.73 320.31 -4.81 -29.54 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -2.64 Total: 10.85 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.51 Total: -6.81 kcal Atomic # 7 Polarization: -27.34 SS G_CDS: 0.55 Total: -26.79 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.12 Total: -15.13 kcal Atomic # 9 Polarization: -7.82 SS G_CDS: 0.12 Total: -7.70 kcal Atomic # 14 Polarization: 16.24 SS G_CDS: -5.03 Total: 11.21 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -24.73 -4.81 -29.54 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169476331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.108 kcal (2) G-P(sol) polarization free energy of solvation -24.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds