Wall clock time and date at job start Tue Mar 31 2020 11:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35929 * 117.00044 * 2 1 4 4 C 1.39434 * 119.82513 * 359.97438 * 3 2 1 5 5 C 1.38066 * 120.57517 * 180.02562 * 4 3 2 6 6 C 1.38726 * 120.20810 * 0.02562 * 5 4 3 7 7 N 1.38907 * 120.18128 * 179.97438 * 6 5 4 8 8 C 1.36354 * 120.00176 * 359.97438 * 7 6 5 9 9 C 1.35576 * 119.99935 * 180.02562 * 8 7 6 10 10 C 1.40251 * 120.00225 * 179.97438 * 9 8 7 11 11 O 1.21543 * 119.99698 * 359.97438 * 10 9 8 12 12 C 1.50698 * 120.00657 * 179.72549 * 10 9 8 13 13 F 1.39892 * 109.47369 * 180.27162 * 12 10 9 14 14 F 1.39897 * 109.46877 * 300.27851 * 12 10 9 15 15 F 1.39907 * 109.46696 * 60.27314 * 12 10 9 16 16 C 1.41543 * 119.63688 * 0.25139 * 6 5 4 17 17 C 1.41005 * 120.27722 * 179.70840 * 16 6 5 18 18 H 1.07998 * 120.00278 * 25.45623 * 17 16 6 19 19 C 1.39949 * 119.99819 * 205.45890 * 17 16 6 20 20 N 1.30862 * 120.00044 * 15.15143 * 19 17 16 21 21 Si 1.86795 * 119.99747 * 195.15588 * 19 17 16 22 22 H 1.48504 * 109.47088 * 94.96471 * 21 19 17 23 23 H 1.48506 * 109.46994 * 214.96526 * 21 19 17 24 24 H 1.48498 * 109.47340 * 334.96676 * 21 19 17 25 25 C 1.37864 * 119.82537 * 180.02562 * 3 2 1 26 26 H 1.09008 * 109.47436 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47716 * 299.99894 * 1 2 3 28 28 H 1.09005 * 109.47092 * 60.00637 * 1 2 3 29 29 H 1.07999 * 119.70629 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.89579 * 179.97438 * 5 4 3 31 31 H 0.97000 * 119.99452 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.99956 * 0.02562 * 8 7 6 33 33 H 1.08002 * 120.00153 * 0.02562 * 9 8 7 34 34 H 0.96990 * 119.99956 * 180.02562 * 20 19 17 35 35 H 1.07997 * 120.10496 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2831 2.3782 -0.0005 5 6 1.8937 3.6165 -0.0011 6 6 3.2777 3.7122 -0.0016 7 7 3.8915 4.9583 -0.0027 8 6 3.1335 6.0917 -0.0038 9 6 3.7326 7.3079 -0.0053 10 6 2.9530 8.4738 -0.0070 11 8 1.7402 8.3938 -0.0074 12 6 3.6188 9.8257 -0.0025 13 9 2.6417 10.8268 0.0011 14 9 4.4168 9.9486 1.1400 15 9 4.4162 9.9565 -1.1446 16 6 4.0609 2.5332 -0.0070 17 6 5.4685 2.6148 -0.0138 18 1 5.9608 3.4886 0.3869 19 6 6.2278 1.5635 -0.5400 20 7 5.6558 0.6520 -1.2845 21 14 8.0578 1.4615 -0.1793 22 1 8.2834 0.5713 0.9877 23 1 8.7660 0.9137 -1.3641 24 1 8.5788 2.8184 0.1252 25 6 3.4230 1.2791 -0.0005 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 0.2051 2.3129 -0.0005 30 1 1.2921 4.5134 -0.0019 31 1 4.8594 5.0221 -0.0035 32 1 2.0558 6.0206 -0.0033 33 1 4.8103 7.3790 -0.0062 34 1 6.1820 -0.0768 -1.6488 35 1 4.0101 0.3726 -0.0005 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169476331.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:08 Heat of formation + Delta-G solvation = -199.735324 kcal Electronic energy + Delta-G solvation = -25166.268330 eV Core-core repulsion = 20714.475986 eV Total energy + Delta-G solvation = -4451.792345 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 315.087 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.18605 -48.70454 -48.68351 -41.01152 -40.40874 -39.29110 -36.98231 -35.37974 -32.70621 -31.77592 -30.15802 -28.78560 -27.45635 -27.06436 -24.69019 -22.96804 -22.10805 -21.06797 -19.76171 -19.61054 -19.50364 -19.20110 -18.19455 -17.82527 -17.31533 -16.60514 -16.36579 -16.21489 -16.09576 -15.79287 -15.41959 -15.17483 -15.10867 -15.08195 -14.83070 -14.82631 -14.69478 -14.49278 -14.27052 -14.12632 -13.48416 -13.36148 -13.00269 -12.85884 -12.83349 -12.69488 -12.33332 -11.90348 -11.59779 -11.37194 -11.07669 -11.05891 -9.73113 -9.52708 -8.76269 -8.14963 -6.41220 -0.29550 0.84973 1.00764 1.41835 1.46854 1.51020 1.53896 1.86374 2.16549 2.28611 2.59895 2.67679 2.76404 3.05228 3.32000 3.56264 3.78099 4.20930 4.39375 4.47116 4.48406 4.48764 4.66308 4.74203 4.79389 4.90824 5.01960 5.14279 5.37256 5.50625 5.58596 5.81364 5.95988 6.12310 6.25030 6.42038 6.53460 6.76600 6.80484 6.95592 8.23005 Molecular weight = 315.09amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.003686 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.440147 B = 7595.094876 C = 9709.152171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.349 6.349 3 C 0.120 3.880 4 C -0.287 4.287 5 C -0.089 4.089 6 C -0.028 4.028 7 N -0.575 5.575 8 C 0.274 3.726 9 C -0.426 4.426 10 C 0.372 3.628 11 O -0.493 6.493 12 C 0.429 3.571 13 F -0.179 7.179 14 F -0.171 7.171 15 F -0.171 7.171 16 C 0.108 3.892 17 C -0.483 4.483 18 H 0.094 0.906 19 C 0.039 3.961 20 N -0.810 5.810 21 Si 0.981 3.019 22 H -0.267 1.267 23 H -0.273 1.273 24 H -0.250 1.250 25 C -0.210 4.210 26 H 0.114 0.886 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.134 0.866 30 H 0.133 0.867 31 H 0.418 0.582 32 H 0.163 0.837 33 H 0.143 0.857 34 H 0.291 0.709 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.168 6.043 1.865 6.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.264 6.264 3 C 0.075 3.925 4 C -0.307 4.307 5 C -0.109 4.109 6 C -0.123 4.123 7 N -0.181 5.181 8 C 0.131 3.869 9 C -0.455 4.455 10 C 0.257 3.743 11 O -0.375 6.375 12 C 0.373 3.627 13 F -0.160 7.160 14 F -0.152 7.152 15 F -0.153 7.153 16 C 0.104 3.896 17 C -0.511 4.511 18 H 0.112 0.888 19 C -0.178 4.178 20 N -0.435 5.435 21 Si 0.802 3.198 22 H -0.192 1.192 23 H -0.198 1.198 24 H -0.173 1.173 25 C -0.231 4.231 26 H 0.132 0.868 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.151 0.849 30 H 0.151 0.849 31 H 0.257 0.743 32 H 0.180 0.820 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.710 5.436 1.710 6.310 hybrid contribution 1.152 0.142 -0.074 1.163 sum -1.558 5.578 1.636 6.018 Atomic orbital electron populations 1.23172 0.77499 1.04629 1.01653 1.85996 1.22817 1.28134 1.89459 1.19102 0.92218 0.84079 0.97126 1.20645 0.99258 0.91150 1.19635 1.20450 0.91746 0.97785 1.00967 1.17860 0.92085 0.84253 1.18114 1.41789 1.10336 1.02695 1.63282 1.22065 0.98287 0.85119 0.81390 1.20515 1.01462 0.90625 1.32932 1.20339 0.89386 0.88081 0.76468 1.90674 1.15914 1.87414 1.43519 1.21201 0.77594 0.89544 0.74357 1.93179 1.62670 1.64058 1.96120 1.93205 1.74724 1.96586 1.50695 1.93209 1.74778 1.96535 1.50764 1.17222 0.93533 0.89042 0.89799 1.19650 0.90969 1.04545 1.35922 0.88805 1.26729 1.05731 0.93661 0.91699 1.69885 1.40571 1.10897 1.22118 0.85185 0.75832 0.80202 0.78624 1.19221 1.19815 1.17289 1.20423 0.90600 0.98379 1.13691 0.86756 0.92225 0.92592 0.84853 0.84900 0.74271 0.82015 0.83899 0.89852 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.66 9.80 113.37 1.11 1.78 16 2 O -0.35 -13.78 10.49 -92.75 -0.97 -14.75 16 3 C 0.12 5.17 6.67 22.47 0.15 5.32 16 4 C -0.29 -10.80 9.03 22.52 0.20 -10.60 16 5 C -0.09 -3.28 9.28 22.35 0.21 -3.08 16 6 C -0.03 -1.11 6.65 38.95 0.26 -0.85 16 7 N -0.58 -18.91 5.35 -185.71 -0.99 -19.90 16 8 C 0.27 8.00 9.56 83.37 0.80 8.80 16 9 C -0.43 -11.77 9.36 22.14 0.21 -11.57 16 10 C 0.37 11.03 6.45 26.17 0.17 11.19 16 11 O -0.49 -16.87 16.35 -3.85 -0.06 -16.93 16 12 C 0.43 11.71 3.33 71.24 0.24 11.95 16 13 F -0.18 -5.17 16.92 44.97 0.76 -4.41 16 14 F -0.17 -4.46 17.24 44.97 0.78 -3.69 16 15 F -0.17 -4.53 17.25 44.97 0.78 -3.75 16 16 C 0.11 4.98 5.58 -21.18 -0.12 4.86 16 17 C -0.48 -21.64 8.51 23.36 0.20 -21.44 16 18 H 0.09 3.79 6.67 -2.91 -0.02 3.77 16 19 C 0.04 1.74 5.19 85.25 0.44 2.18 16 20 N -0.81 -38.56 10.87 21.83 0.24 -38.32 16 21 Si 0.98 33.65 29.59 68.60 2.03 35.68 16 22 H -0.27 -9.17 7.11 99.48 0.71 -8.46 16 23 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 24 H -0.25 -8.08 7.11 99.48 0.71 -7.37 16 25 C -0.21 -10.19 8.60 22.78 0.20 -9.99 16 26 H 0.11 2.33 8.14 -2.38 -0.02 2.31 16 27 H 0.06 1.42 7.65 -2.39 -0.02 1.41 16 28 H 0.06 1.38 7.65 -2.38 -0.02 1.37 16 29 H 0.13 4.16 6.26 -2.91 -0.02 4.15 16 30 H 0.13 4.04 5.94 -2.91 -0.02 4.02 16 31 H 0.42 13.08 6.86 -92.71 -0.64 12.44 16 32 H 0.16 4.57 5.27 -2.91 -0.02 4.55 16 33 H 0.14 3.49 8.05 -2.91 -0.02 3.47 16 34 H 0.29 12.64 8.30 -92.72 -0.77 11.87 16 35 H 0.11 5.76 6.14 -2.91 -0.02 5.75 16 Total: -1.00 -53.93 320.31 7.16 -46.77 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.55 Total: 30.74 kcal Atomic # 6 Polarization: -15.49 SS G_CDS: 4.06 Total: -11.43 kcal Atomic # 7 Polarization: -57.47 SS G_CDS: -0.76 Total: -58.23 kcal Atomic # 8 Polarization: -30.65 SS G_CDS: -1.04 Total: -31.68 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 2.31 Total: -11.85 kcal Atomic # 14 Polarization: 33.65 SS G_CDS: 2.03 Total: 35.68 kcal Total: -53.93 7.16 -46.77 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169476331.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.961 kcal (2) G-P(sol) polarization free energy of solvation -53.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds