Wall clock time and date at job start Tue Mar 31 2020 11:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09004 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46942 * 240.00130 * 2 1 3 5 5 C 1.50697 * 109.46814 * 175.11292 * 4 2 1 6 6 C 1.38246 * 120.00581 * 268.53938 * 5 4 2 7 7 C 1.38219 * 120.01343 * 179.77254 * 6 5 4 8 8 C 1.38264 * 120.02635 * 0.50184 * 7 6 5 9 9 C 1.38190 * 120.01047 * 359.75575 * 8 7 6 10 10 C 1.38326 * 120.01170 * 88.82127 * 5 4 2 11 11 Cl 1.73604 * 120.01148 * 359.94650 * 10 5 4 12 12 N 1.46500 * 109.46722 * 119.99970 * 2 1 3 13 13 C 1.38224 * 119.99981 * 236.51089 * 12 2 1 14 14 C 1.38987 * 120.00281 * 357.86807 * 13 12 2 15 15 H 1.07994 * 119.99695 * 315.71069 * 14 13 12 16 16 C 1.40819 * 120.00003 * 135.70500 * 14 13 12 17 17 N 1.30344 * 120.00004 * 342.28565 * 16 14 13 18 18 Si 1.86797 * 120.00063 * 162.28049 * 16 14 13 19 19 H 1.48504 * 109.47132 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47081 * 120.00033 * 18 16 14 21 21 H 1.48503 * 109.47500 * 240.00333 * 18 16 14 22 22 C 1.41157 * 120.00066 * 177.86991 * 13 12 2 23 23 C 1.43192 * 120.00205 * 174.00560 * 22 13 12 24 24 N 5.93570 * 126.57716 * 84.95923 * 2 1 3 25 25 C 1.43199 * 119.99665 * 354.00601 * 22 13 12 26 26 N 4.95922 * 99.34891 * 127.55053 * 2 1 3 27 27 H 1.09003 * 109.46895 * 59.99687 * 1 2 3 28 28 H 1.08992 * 109.47283 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46955 * 300.00098 * 1 2 3 30 30 H 1.08999 * 109.47006 * 295.10920 * 4 2 1 31 31 H 1.08995 * 109.47256 * 55.11387 * 4 2 1 32 32 H 1.08003 * 119.98795 * 0.02562 * 6 5 4 33 33 H 1.08002 * 119.98618 * 180.23539 * 7 6 5 34 34 H 1.07999 * 119.99252 * 179.76569 * 8 7 6 35 35 H 1.08006 * 120.00007 * 180.02562 * 9 8 7 36 36 H 0.96998 * 119.99656 * 56.24343 * 12 2 1 37 37 H 0.97004 * 119.99852 * 185.07364 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5421 -0.6172 -1.3112 6 6 4.1352 0.4302 -1.9913 7 6 5.5128 0.5283 -2.0442 8 6 6.2988 -0.4266 -1.4260 9 6 5.7071 -1.4770 -0.7505 10 6 4.3279 -1.5729 -0.6927 11 17 3.5840 -2.8918 0.1565 12 7 2.0183 -0.6906 1.1962 13 6 2.8714 -0.0418 2.0690 14 6 3.3013 1.2500 1.7892 15 1 3.6245 1.5072 0.7914 16 6 3.3151 2.2234 2.8068 17 7 2.6221 2.0384 3.8951 18 14 4.3268 3.7796 2.5970 19 1 5.0163 3.7482 1.2821 20 1 3.4323 4.9634 2.6582 21 1 5.3355 3.8646 3.6834 22 6 3.3061 -0.6911 3.2446 23 6 4.2881 -0.0722 4.0831 24 7 5.0672 0.4188 4.7483 25 6 2.7650 -1.9688 3.5986 26 7 2.3357 -2.9823 3.8795 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.7500 -1.7710 -1.2065 31 1 1.6070 -0.2604 -2.1370 32 1 3.5217 1.1741 -2.4778 33 1 5.9756 1.3488 -2.5724 34 1 7.3752 -0.3515 -1.4710 35 1 6.3212 -2.2226 -0.2673 36 1 1.7398 -1.6019 1.3777 37 1 2.5722 2.7396 4.5635 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170254235.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:34 Heat of formation + Delta-G solvation = 52.719310 kcal Electronic energy + Delta-G solvation = -24016.965668 eV Core-core repulsion = 20590.979234 eV Total energy + Delta-G solvation = -3425.986434 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 315.083 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.46636 -38.99068 -37.18226 -37.11875 -36.49969 -35.45489 -33.92196 -32.05946 -31.41735 -29.72326 -28.48690 -27.24889 -23.46858 -23.30646 -22.55073 -21.70232 -20.07287 -18.70576 -17.95306 -17.42312 -17.00084 -16.49487 -16.13322 -15.77425 -15.17149 -14.80881 -14.58468 -14.41910 -14.37778 -14.18412 -13.73079 -13.64060 -13.43568 -13.35928 -13.20330 -12.98132 -12.90393 -12.83986 -12.73848 -12.51891 -12.31523 -12.24227 -12.14499 -12.00718 -11.82262 -11.67131 -11.25839 -11.17803 -10.63749 -9.61772 -9.35468 -8.78861 -8.05029 -6.80059 0.43146 0.51969 1.10260 1.43956 1.44896 1.53181 1.60712 2.18023 2.20073 2.42138 2.54277 2.85923 2.88171 3.08864 3.67937 3.88694 4.02464 4.09167 4.24428 4.29626 4.48180 4.56951 4.62245 4.68765 4.83936 4.86544 4.90547 5.06399 5.08751 5.12771 5.19149 5.35834 5.47196 5.52912 5.63346 5.67084 5.68526 5.88655 6.09969 6.29973 6.63705 6.99295 7.18094 7.34391 7.62279 8.20065 Molecular weight = 315.08amu Principal moments of inertia in cm(-1) A = 0.010515 B = 0.007547 C = 0.006356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2662.200882 B = 3709.076876 C = 4404.123821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.104 0.896 4 C -0.094 4.094 5 C -0.074 4.074 6 C -0.107 4.107 7 C -0.118 4.118 8 C -0.119 4.119 9 C -0.129 4.129 10 C -0.037 4.037 11 Cl -0.083 7.083 12 N -0.716 5.716 13 C 0.467 3.533 14 C -0.487 4.487 15 H 0.114 0.886 16 C 0.073 3.927 17 N -0.777 5.777 18 Si 0.946 3.054 19 H -0.235 1.235 20 H -0.255 1.255 21 H -0.295 1.295 22 C -0.316 4.316 23 C 0.355 3.645 24 N -0.580 5.580 25 C 0.311 3.689 26 N -0.563 5.563 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.115 0.885 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.383 0.617 37 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.877 2.719 -18.787 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.039 3.961 3 H 0.121 0.879 4 C -0.132 4.132 5 C -0.075 4.075 6 C -0.125 4.125 7 C -0.135 4.135 8 C -0.138 4.138 9 C -0.148 4.148 10 C -0.063 4.063 11 Cl -0.055 7.055 12 N -0.339 5.339 13 C 0.348 3.652 14 C -0.520 4.520 15 H 0.132 0.868 16 C -0.153 4.153 17 N -0.399 5.399 18 Si 0.768 3.232 19 H -0.157 1.157 20 H -0.179 1.179 21 H -0.221 1.221 22 C -0.337 4.337 23 C 0.048 3.952 24 N -0.264 5.264 25 C 0.007 3.993 26 N -0.248 5.248 27 H 0.111 0.889 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.090 0.910 31 H 0.133 0.867 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.141 0.859 36 H 0.217 0.783 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.541 1.937 -17.212 17.329 hybrid contribution 0.265 0.033 0.760 0.805 sum -0.276 1.970 -16.452 16.572 Atomic orbital electron populations 1.22083 0.94006 1.02138 1.02924 1.21171 0.94192 0.98124 0.82568 0.87857 1.21182 0.90042 1.02427 0.99514 1.19851 0.96470 0.94059 0.97124 1.21316 0.95396 0.97047 0.98718 1.21527 0.93932 0.99014 0.99072 1.21319 1.01169 0.93876 0.97392 1.21175 0.92848 1.00260 1.00518 1.20982 0.93441 0.92518 0.99388 1.98358 1.82960 1.47493 1.76655 1.45360 1.46811 1.16615 1.25065 1.16965 0.79419 0.87629 0.81203 1.19209 1.41009 0.93275 0.98483 0.86811 1.26431 0.93244 1.02878 0.92699 1.69565 1.28697 1.34488 1.07139 0.85652 0.79249 0.78149 0.80196 1.15713 1.17949 1.22135 1.12792 1.18991 0.94863 1.07060 1.24761 0.90037 0.90001 0.90358 1.80900 1.18665 1.13047 1.13798 1.25535 0.90807 0.91708 0.91287 1.81013 1.16518 1.14907 1.12381 0.88875 0.92799 0.93521 0.91007 0.86673 0.82620 0.83127 0.83796 0.85867 0.78310 0.89834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.52 71.98 0.69 -2.68 16 2 C 0.14 3.73 2.84 44.99 0.13 3.86 16 3 H 0.10 2.83 5.94 -2.39 -0.01 2.81 16 4 C -0.09 -1.99 4.70 29.85 0.14 -1.85 16 5 C -0.07 -1.83 4.97 -19.84 -0.10 -1.93 16 6 C -0.11 -2.19 9.70 22.27 0.22 -1.98 16 7 C -0.12 -2.36 10.05 22.27 0.22 -2.14 16 8 C -0.12 -2.74 10.05 22.26 0.22 -2.52 16 9 C -0.13 -3.60 9.83 22.29 0.22 -3.38 16 10 C -0.04 -1.08 6.05 22.32 0.14 -0.94 16 11 Cl -0.08 -2.68 24.77 -2.72 -0.07 -2.75 16 12 N -0.72 -24.66 3.07 -318.16 -0.98 -25.64 16 13 C 0.47 19.51 6.19 39.03 0.24 19.76 16 14 C -0.49 -20.06 7.05 23.08 0.16 -19.90 16 15 H 0.11 4.27 7.19 -2.91 -0.02 4.25 16 16 C 0.07 3.16 4.10 85.54 0.35 3.51 16 17 N -0.78 -36.87 11.33 21.98 0.25 -36.62 16 18 Si 0.95 35.09 29.60 68.60 2.03 37.12 16 19 H -0.23 -7.87 7.11 99.48 0.71 -7.16 16 20 H -0.26 -8.74 7.11 99.48 0.71 -8.03 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 C -0.32 -15.21 5.39 -20.07 -0.11 -15.32 16 23 C 0.35 18.66 11.75 88.33 1.04 19.70 16 24 N -0.58 -31.64 18.54 19.00 0.35 -31.29 16 25 C 0.31 15.11 14.10 88.33 1.25 16.36 16 26 N -0.56 -27.73 18.54 19.00 0.35 -27.37 16 27 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.07 1.63 6.96 -2.39 -0.02 1.61 16 31 H 0.12 1.66 8.08 -2.39 -0.02 1.64 16 32 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.14 2.60 8.06 -2.91 -0.02 2.58 16 35 H 0.12 3.37 8.06 -2.91 -0.02 3.34 16 36 H 0.38 13.83 6.50 -92.71 -0.60 13.22 16 37 H 0.29 13.20 8.29 -92.71 -0.77 12.43 16 Total: -1.00 -60.27 343.07 7.27 -53.00 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: 0.53 Total: 23.01 kcal Atomic # 6 Polarization: 5.75 SS G_CDS: 4.80 Total: 10.55 kcal Atomic # 7 Polarization: -120.90 SS G_CDS: -0.02 Total: -120.92 kcal Atomic # 14 Polarization: 35.09 SS G_CDS: 2.03 Total: 37.12 kcal Atomic # 17 Polarization: -2.68 SS G_CDS: -0.07 Total: -2.75 kcal Total: -60.27 7.27 -53.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170254235.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.718 kcal (2) G-P(sol) polarization free energy of solvation -60.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds